mRNA_Ecto-sp13_S_contig73538.18524.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73538.18524.1
Unique NamemRNA_Ecto-sp13_S_contig73538.18524.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig73538.18524.1 vs. uniprot
Match: B3VMZ6_FUCSE (Heat shock protein 90 (Fragment) n=1 Tax=Fucus serratus TaxID=87148 RepID=B3VMZ6_FUCSE)

HSP 1 Score: 121 bits (304), Expect = 3.890e-31
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 SKKTMEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFAGRIHRWV 189
            SKKTMEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFAGRIHR +
Sbjct:  381 SKKTMEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFAGRIHRLI 443
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BLAST of mRNA_Ecto-sp13_S_contig73538.18524.1 vs. uniprot
Match: A0A6U3USU3_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6U3USU3_9STRA)

HSP 1 Score: 114 bits (284), Expect = 4.350e-31
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 SKKTMEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFAGRIHRWV 189
            SKKTME+NPTNSI+ ALREKA ADQSDKTVKDLIWLLYDTSLLTSGFSLDEP TFA RIHR V
Sbjct:   37 SKKTMEINPTNSIITALREKADADQSDKTVKDLIWLLYDTSLLTSGFSLDEPATFASRIHRLV 99
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BLAST of mRNA_Ecto-sp13_S_contig73538.18524.1 vs. uniprot
Match: A0A7S1ZJW4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJW4_TRICV)

HSP 1 Score: 113 bits (282), Expect = 8.270e-31
Identity = 56/63 (88.89%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 SKKTMEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFAGRIHRWV 189
            SKKTMEVNPTNSI+ ALREKA ADQSDKTVKDLIWLLYDTSLLTSGFSLDEP TF+ RIHR V
Sbjct:   60 SKKTMEVNPTNSIIAALREKADADQSDKTVKDLIWLLYDTSLLTSGFSLDEPATFSARIHRLV 122
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BLAST of mRNA_Ecto-sp13_S_contig73538.18524.1 vs. uniprot
Match: D7FJU9_ECTSI (Heat shock protein 90 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJU9_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.100e-30
Identity = 61/63 (96.83%), Postives = 62/63 (98.41%), Query Frame = 1 
Query:    1 SKKTMEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFAGRIHRWV 189
            SKKTMEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFAGRIHR +
Sbjct:  613 SKKTMEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFAGRIHRLI 675
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BLAST of mRNA_Ecto-sp13_S_contig73538.18524.1 vs. uniprot
Match: A0A7S0LKX1_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LKX1_9EUKA)

HSP 1 Score: 111 bits (278), Expect = 1.940e-30
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 SKKTMEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFAGRIHRWV 189
            SKKTMEVNPTN IVV+LREK +ADQSDKTVKD+IW+LYDTSLLTSGFSLDEPTTFA RIHR +
Sbjct:   17 SKKTMEVNPTNPIVVSLREKVAADQSDKTVKDVIWMLYDTSLLTSGFSLDEPTTFANRIHRLI 79
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BLAST of mRNA_Ecto-sp13_S_contig73538.18524.1 vs. uniprot
Match: A0A7S2SAT3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SAT3_9STRA)

HSP 1 Score: 110 bits (276), Expect = 9.760e-30
Identity = 54/63 (85.71%), Postives = 58/63 (92.06%), Query Frame = 1 
Query:    1 SKKTMEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFAGRIHRWV 189
            SKKTME+NP N+I+ ALREKA ADQSDKTVKDLIWLLYDTSLLTSGFSLDEP+TFA RIHR V
Sbjct:   82 SKKTMEINPQNAIITALREKADADQSDKTVKDLIWLLYDTSLLTSGFSLDEPSTFASRIHRLV 144
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BLAST of mRNA_Ecto-sp13_S_contig73538.18524.1 vs. uniprot
Match: A0A7R9ZDQ5_9STRA (Hypothetical protein n=4 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZDQ5_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.470e-28
Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 SKKTMEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFAGRIHRWV 189
            SKKTME+NPTNSIVVALR+KA ADQSDKTVKDLIWLLYDTSLLTSGFSLDEP TFA RIHR V
Sbjct:  386 SKKTMEINPTNSIVVALRDKADADQSDKTVKDLIWLLYDTSLLTSGFSLDEPATFASRIHRLV 448
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BLAST of mRNA_Ecto-sp13_S_contig73538.18524.1 vs. uniprot
Match: B8C637_THAPS (HSP90 family member n=2 Tax=Thalassiosira TaxID=35127 RepID=B8C637_THAPS)

HSP 1 Score: 115 bits (287), Expect = 2.230e-28
Identity = 56/63 (88.89%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 SKKTMEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFAGRIHRWV 189
            SKKTME+NPTNSI++ALREKA ADQSDKTVKDLIWLLYDTSLLTSGFSLDEP TFA RIHR V
Sbjct:  606 SKKTMEINPTNSIIIALREKADADQSDKTVKDLIWLLYDTSLLTSGFSLDEPATFASRIHRLV 668
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BLAST of mRNA_Ecto-sp13_S_contig73538.18524.1 vs. uniprot
Match: A0A7S2R7H2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R7H2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.340e-28
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 SKKTMEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFAGRIHRWV 189
            SKKTME+NP N+I+ +LR+KA+ADQ DKTVKDLIWLLYDTSLLTSGFSLDEP TFA RIHR +
Sbjct:   12 SKKTMEINPQNAIIASLRDKAAADQGDKTVKDLIWLLYDTSLLTSGFSLDEPQTFASRIHRLI 74
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BLAST of mRNA_Ecto-sp13_S_contig73538.18524.1 vs. uniprot
Match: A0A2D4CKG5_PYTIN (Hsp83-like protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CKG5_PYTIN)

HSP 1 Score: 105 bits (263), Expect = 4.170e-28
Identity = 51/63 (80.95%), Postives = 57/63 (90.48%), Query Frame = 1 
Query:    1 SKKTMEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFAGRIHRWV 189
            SKKTME+NP + I+ +LREKA AD+SDKTVKDLIWLLYDTSLLTSGFSLDEPTTFA RIHR +
Sbjct:   21 SKKTMEINPLHPIIKSLREKADADKSDKTVKDLIWLLYDTSLLTSGFSLDEPTTFANRIHRLI 83
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73538.18524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B3VMZ6_FUCSE3.890e-3196.83Heat shock protein 90 (Fragment) n=1 Tax=Fucus ser... [more]
A0A6U3USU3_9STRA4.350e-3188.89Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1ZJW4_TRICV8.270e-3188.89Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
D7FJU9_ECTSI1.100e-3096.83Heat shock protein 90 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7S0LKX1_9EUKA1.940e-3085.71Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S2SAT3_9STRA9.760e-3085.71Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7R9ZDQ5_9STRA1.470e-2890.48Hypothetical protein n=4 Tax=Pseudictyota dubia Ta... [more]
B8C637_THAPS2.230e-2888.89HSP90 family member n=2 Tax=Thalassiosira TaxID=35... [more]
A0A7S2R7H2_9STRA2.340e-2879.37Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2D4CKG5_PYTIN4.170e-2880.95Hsp83-like protein n=1 Tax=Pythium insidiosum TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73538contigEcto-sp13_S_contig73538:108..669 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score116.3
Seed ortholog evalue4.8e-24
Seed eggNOG ortholog2880.D7FJU9
Preferred nameHSP90
Model size189
KEGG koko:K04079
KEGG Pathwayko04141,ko04151,ko04217,ko04612,ko04621,ko04626,ko04657,ko04659,ko04914,ko04915,ko05200,ko05215,ko05418,map04141,map04151,map04217,map04612,map04621,map04626,map04657,map04659,map04914,map04915,map05200,map05215,map05418
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002376,GO:0003674,GO:0003824,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006457,GO:0006950,GO:0006952,GO:0006955,GO:0008150,GO:0009266,GO:0009408,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009814,GO:0009816,GO:0009987,GO:0010035,GO:0010038,GO:0012505,GO:0016020,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022607,GO:0030312,GO:0031090,GO:0031974,GO:0031981,GO:0034622,GO:0042221,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0048046,GO:0050896,GO:0051131,GO:0051592,GO:0051704,GO:0051707,GO:0051716,GO:0061077,GO:0065003,GO:0070013,GO:0070887,GO:0071241,GO:0071248,GO:0071277,GO:0071840,GO:0071944,GO:0098542,GO:0098588,GO:0098805
Exons2
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG0326@1,KOG0019@2759
Cds size177
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03029,ko03051,ko03110,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464003.963863-CDS-Ecto-sp13_S_contig73538:107..2361681464003.963863-CDS-Ecto-sp13_S_contig73538:107..236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73538 108..236 -
1681464003.9772177-CDS-Ecto-sp13_S_contig73538:609..6571681464003.9772177-CDS-Ecto-sp13_S_contig73538:609..657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73538 610..657 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464004.0024295-UTR-Ecto-sp13_S_contig73538:657..6691681464004.0024295-UTR-Ecto-sp13_S_contig73538:657..669Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig73538 658..669 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73538.18524.1prot_Ecto-sp13_S_contig73538.18524.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73538 108..657 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73538.18524.1

>prot_Ecto-sp13_S_contig73538.18524.1 ID=prot_Ecto-sp13_S_contig73538.18524.1|Name=mRNA_Ecto-sp13_S_contig73538.18524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MEVNPTNSIVVALREKASADQSDKTVKDLIWLLYDTSLLTSGFSLDEPTT
FAGRIHRWV
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mRNA from alignment at Ecto-sp13_S_contig73538:108..669-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73538.18524.1 ID=mRNA_Ecto-sp13_S_contig73538.18524.1|Name=mRNA_Ecto-sp13_S_contig73538.18524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=562bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73538:108..669- (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAAGAAGACCATGGAGGTTAACCCCACCAACTCTATCGTTGTCGCTCT
GCGGGAGAAGGTGCGTGTGTGGTTGCGATTGCGTCCCTAAAACTGAACGT
TTAAATCTACCAATTAAGTGGTGAGAACCTAACTGGTGCAAAGTTGAATC
ATGAACATAGCACACACAACCTTTCTTCTTCAAGGGTAGAGTCACTGACG
AAATTTTCGTCTTTTCCGAAAAAAAAAGCGCGTTATTTTTAATTTATCAC
TGATACTACAGTTCATTGTTTCGCGCCGTGGCCATGGTGCCCCGCATTCA
GAGTCCCTCGTCCTTGCTACTCGCAGTCGTGGCTTGTATGATGTCGTTTT
TGAAGTACCGATGTGGACGCACCCAAGGCAAGTCTCTAATTCTTCGTGTT
GCTTGTATCCTCTACCTCTTTTGACTTCCTAAGGCGTCTGCGGACCAGAG
CGACAAGACAGTGAAGGATTTGATCTGGCTCCTTTACGACACCTCGCTCC
TTACGTCGGGCTTTAGCCTCGACGAACCAACCACCTTTGCGGGACGCATC
CACAGGTGGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73538:108..669-

>mRNA_Ecto-sp13_S_contig73538.18524.1 ID=mRNA_Ecto-sp13_S_contig73538.18524.1|Name=mRNA_Ecto-sp13_S_contig73538.18524.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73538:108..669- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGTTAACCCCACCAACTCTATCGTTGTCGCTCTGCGGGAGAAGGC
GTCTGCGGACCAGAGCGACAAGACAGTGAAGGATTTGATCTGGCTCCTTT
ACGACACCTCGCTCCTTACGTCGGGCTTTAGCCTCGACGAACCAACCACC
TTTGCGGGACGCATCCACAGGTGGGTC
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