mRNA_Ecto-sp13_S_contig735.18517.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig735.18517.1
Unique NamemRNA_Ecto-sp13_S_contig735.18517.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig735.18517.1 vs. uniprot
Match: A0A6H5K0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D2_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 6.530e-65
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLVQNFVTTIPKKLKTRFIEYGPEVMMCVGLVYGIYTSHKKGFAQLHKDHRD 297
            MAFRMTGRVLGAVARERNDVQPALRKVWKA+EPVDGLVIRSISPYQLNLV+NFVTTIPKKLKTRFIEYGPEVMMCVG+VYG YTSHKKGFAQLHKDHRD
Sbjct:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAYEPVDGLVIRSISPYQLNLVRNFVTTIPKKLKTRFIEYGPEVMMCVGIVYGTYTSHKKGFAQLHKDHRD 99
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BLAST of mRNA_Ecto-sp13_S_contig735.18517.1 vs. uniprot
Match: D7G6P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P4_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 2.340e-18
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1 
Query:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVIR 120
            MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLV R
Sbjct:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVSR 40
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BLAST of mRNA_Ecto-sp13_S_contig735.18517.1 vs. uniprot
Match: A0A6V1P0L7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P0L7_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 1.140e-13
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:    1 MAFRMTGRVLGAVAR--------ERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLVQNFVTTIPKKLKTRFIEYGPEV---MMCVGLVYGIYTSHKKGFAQLHKD 288
            MA R T  V G V R        ERND+QP L+K WK    +DG+V +S+SP++  +VQ ++ TIP K+K + ++  P     ++ V +  G   S KK  +  H+D
Sbjct:    1 MALRRTLAVGGPVRRSFAAMFAAERNDIQPQLKKWWKGTPQMDGVVTQSLSPFEQQIVQPWIKTIPDKIKKKIVDDFPPTIPALIFVAITLGYCESEKKRLSMEHRD 107
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BLAST of mRNA_Ecto-sp13_S_contig735.18517.1 vs. uniprot
Match: A0A7S1TUQ3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUQ3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.420e-10
Identity = 41/102 (40.20%), Postives = 54/102 (52.94%), Query Frame = 1 
Query:    4 AFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLVQNFVTTIPKKLKTRFIEY----GPEVMMCVGLVYGIYTSHKKGFAQLHKDHRD 297
            AFRMT RV+   A  R DV P L K WK   P DG VIR +SPY+ N+V N++ T P+ +  R   Y    GP ++  V   +     + +   QLH  HRD
Sbjct:    6 AFRMTSRVM---AGARPDVNPNLVKWWKKFVPTDGEVIRHLSPYETNVVGNWMKTWPENITKRVTRYAFEGGPALLALVATCWWSEDYYHR--QQLH--HRD 100
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BLAST of mRNA_Ecto-sp13_S_contig735.18517.1 vs. uniprot
Match: A0A2R5GU00_9STRA (Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU00_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 9.440e-9
Identity = 31/91 (34.07%), Postives = 50/91 (54.95%), Query Frame = 1 
Query:   37 VARERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLVQNFVTTIPKKLKTRF----IEYGPEVMMCVGLVYGIYTSHKKGFAQLHKDHRD 297
            +A    +V P L K+WK ++P++GLV R++SPYQ + +  +V T P+K+K +      + GP V++  G V     +    F    K HRD
Sbjct:    1 MAPPMKNVHPGLAKLWKKYKPINGLVTRTVSPYQQDFITPWVKTWPEKMKHKISDNLFDVGPGVLVLFGTVAWADAT----FESEMKKHRD 87
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig735.18517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K0D2_9PHAE6.530e-6595.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6P4_ECTSI2.340e-1897.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1P0L7_HETAK1.140e-1336.45Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1TUQ3_9STRA1.420e-1040.20Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2R5GU00_9STRA9.440e-934.07Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig735contigEcto-sp13_S_contig735:1049..4288 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000150.1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464003.3982775-CDS-Ecto-sp13_S_contig735:1048..11591681464003.3982775-CDS-Ecto-sp13_S_contig735:1048..1159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig735 1049..1159 +
1681464003.4091766-CDS-Ecto-sp13_S_contig735:3516..35851681464003.4091766-CDS-Ecto-sp13_S_contig735:3516..3585Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig735 3517..3585 +
1681464003.4205515-CDS-Ecto-sp13_S_contig735:4168..42881681464003.4205515-CDS-Ecto-sp13_S_contig735:4168..4288Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig735 4169..4288 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig735.18517.1prot_Ecto-sp13_S_contig735.18517.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig735 1049..4288 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig735.18517.1

>prot_Ecto-sp13_S_contig735.18517.1 ID=prot_Ecto-sp13_S_contig735.18517.1|Name=mRNA_Ecto-sp13_S_contig735.18517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVIRSISPYQLNLV
QNFVTTIPKKLKTRFIEYGPEVMMCVGLVYGIYTSHKKGFAQLHKDHRD*
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mRNA from alignment at Ecto-sp13_S_contig735:1049..4288+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig735.18517.1 ID=mRNA_Ecto-sp13_S_contig735.18517.1|Name=mRNA_Ecto-sp13_S_contig735.18517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3240bp|location=Sequence derived from alignment at Ecto-sp13_S_contig735:1049..4288+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTTCCGTATGACTGGACGCGTTTTGGGCGCAGTTGCGCGGGAAAG
GAATGACGTGCAGCCGGCGCTGAGGAAGGTTTGGAAGGCACACGAGCCCG
TCGATGGCCTGGTGAGGAGAGAGGGTGATGCACGTCCCGAAAATACTTGA
CAGACAGGCCCGAGTCGCACGTAGAGCGAGCGGCCTTTTCCACAACACAT
CGACAAAACGATGAGCTCGCAGCAACTGTTTCGCAGTGAAGAGGGGCCCA
TGTCGGCATGCCTTTTCACTGCTGTTTCGTTGTAGCGTCTCCCACACCGC
TTCTATCCAGAGCGGAAGAGCAAGCCTGGGTGTCGGAAGGCCTTTTGTAG
ACCCCCACGACCCATGACGTTTCGGGGTGTTCCTTCTAAAAATAGACTGG
CAACAGTCATTTCAAGATGAACCGGGTCTGTAGCTTGCTCGAAGTCGTTC
AGCTCAGCAGCACTGATGCATCGTTGCTGCCCCAAAGCTCCGTCGGACAG
CAGCAATCCCAACTCAAAGGCCAATGCTGGTGCGCCTATAGCCACAGCAG
TACATGGGGGGAGTGGCGAAGCAGGCGTGGAAGCGTGAAATAGAAGTTGC
GCCGCTTTTTCCCTCTCACCCCGTACAAGCATGTACCTGTACTCGATATT
GTACCTAGTCCGGGATGATCAAGTTAACACTCAGCAACCAGATGCAAGTT
GCTTTCGTTGCACACCGACAACACGGAGTTCATTCGAAATTCAGCATTAG
ATTTTCCCCCGGCGTTCGGCGTTGTGTTACCTTCTCCGTGATGACAAACC
CCGAAGTCTAGTCCTTGTGCCTGCTGTTGCTCCCCCTGTTTTTGCTGGGA
AGGAGCATCTGTCTGGGATTGAGCGCTTCAAGTACGTGCTGCACCAGCTA
CCTCCTGGTGCGATGGTTTCGATGCCTCCGCCAGCATTTTAGTCACGCGG
ATAGGATCGCTGCTGCCTGTTTTTCTGTCAGCGTTGTTACCATGTCCGTG
ATGACATGGCAACGACAGATACACCAGGAAGCAGCATCCTATCGGAGTCA
GGAAAATGCTGGCGGAGGCGTACGAGATCTTCGCATCAGTAGGTATCTCG
TGAAGAGCAGCATATGTTGCTGTAGCGCGCAATCGTAGACAGATACTCTC
TTCCAGTAACTCGGGGAGCAATACCAGGAAAAATATTCGATGCACGGGGA
CGTACGTAGGCCTGCATCCACACTTGGCAGTCCCGCCCATGCAGACCTGC
ACGAGCACCGTTTACTACCCAAGAGCGGTCTAGGCCTACTCCGAGCACCA
TTAGCCTAGCACCACGTCAGGAACCCACCTAGCACCAACCTACCGCCAAT
TCCGGCACCAACCTAGAAGTTAGCCACCCAGCGGCAACCTAGCACCAATC
GGGTGGGTTTGGGAATAGCGTTAGGAATGGCGTAAGGGTTAGAGTTTTTG
GCAGGTTTCACACCCTTGCTCAAGCAAAGACTATCTTATGTTTAGCAGTA
CCATGATTGCCTCGATTACAAAGCAACTGGTTGCCGGTTGAAGGAACAGG
ATGCAACGTTGTGGTACAGCAAGAAAGGGGTTTGAGGCTGGAACGTTTTG
TCCATTTTTTCCTGCATGGAAAGTTTTCATGTTTCCGGTCTGTGAAGGGT
GTGAGAGCATATCGTACAAGCGTCCCCATGGGTTTGTGTGTGTTGTTTCC
CAAAGCCTAGTCCAAGTCCTTTGCGTGGAGTTGCTAGAATACCGGAGATG
GCGGTAGATGCTGCATCTGCCGTATTTACGACTGTGTGATAGCTGTGTTC
TGGTCGCATGTTTTGTCCTCAAGCAGGTTGGAGTGCCGCTACTGCTGCAG
TGTGTTTGTGCTTGTCGCAATCACTCTCGACGTCGGTCGTCCTTCTTTCG
ACCTTTCGGTCGGGTCAAACAGGAGGATGACTACACTTTTTTTCTTCTTT
TATTCTCGAGCTGCGGCGCTTGCGTTGGTTTGTATCCCGAGCATGGATCC
AGCCGTTCCTGTCTAGTCGACAGTGAACCCGGTTGGTAGAACGAATGTGT
TGCCTTGCGTTCGTGCAAGCAGCAGTAGTTGAGGCAAGTCCCAATACACG
TGTGACTGCGCTAATGTCCCACCGCGTGTCTCAAACGTCAGAAGGCTGCG
AGGCTACCAACAGAGCCAGCCACCGCTGCATGTGACCAAGCTTACAAAAA
TGCATGTTTCGTGGATATCTACCTTGGCCGAGAATGCCAGTGACACGTTT
CCTGCCAGCTATTTCATAGTCCTGGAAGCTCGAACCTTTAACCCGCCTAA
CTGATGCATGACAAACGCACCCCCATCTCTGCCGCTCGCTCCTGGCGTGT
GAAGGGGGCTGTTTCGTGTCTGCGTGATTGCTGATTGCTGCTCCCGGCGA
AAACGTGTGCGTTGCTTCTCTTTCGTGGTCGTTTTGTCTCACAAATCCGG
CGGTTTGATCGGTACCAGGTCATCCGGTCAATTTCTCCCTACCAGCTCAA
CTTGGTACAGAACTTCGTCACCACCATCCCCAAGAAGGTATGCTATGTGT
TCTAGACGGCGTGGTTTCGTCCGATCGTGTTTTTGTTGTTTATTTTAGCA
CGGTATCGTCGTACACTGGTGTATTGATGTGGAAGGCGTGTGTTCTTCGT
GTTTTGGTTGTTTACTTGCATGGCCTCGTAGTACACTGGTGTATTGATGT
GGAAGGCCTGTGTTCTCGTCTGTTCGTGGTTCGGTTGTTTATGTGCATGA
TATCGTCGTTGGTGTTGATGTGGAAGGCCTGCCGACGTGCTTTAGCAAAG
ACACGTCCTCGCTTGGGGGTATTGTAAGCAGAAACCAAGTATCACTCGCT
AGGATGCACTTCCCCAAGGCCGAGTATGTGGATTACCTACCGTAGTCTGG
CCGTTGTAGTCGACGCTAACCTGCACTTTTATGCAGGCTGTGCTAGCCAC
TGCAGCTCCTGGAGTATTGCAACCAGGTTTTGAGCATCGCGTTGCCCCGT
AGACGTGCACAAACCGTCCTTTGCGGCACTCCCCCCGTGTCCCACGTGTT
GGCCCTGACCCTCCTCCGCTTTCTGCTGTCCGGCAAACTGCGCGCTTGTC
CTTGTGGTGTGGTCCACCAGTTGAAGACTCGCTTCATCGAGTACGGTCCG
GAGGTGATGATGTGCGTGGGCCTTGTGTACGGGATTTACACCAGTCACAA
GAAGGGCTTCGCGCAGCTCCACAAGGACCACCGGGACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig735:1049..4288+

>mRNA_Ecto-sp13_S_contig735.18517.1 ID=mRNA_Ecto-sp13_S_contig735.18517.1|Name=mRNA_Ecto-sp13_S_contig735.18517.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig735:1049..4288+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTTCCGTATGACTGGACGCGTTTTGGGCGCAGTTGCGCGGGAAAG
GAATGACGTGCAGCCGGCGCTGAGGAAGGTTTGGAAGGCACACGAGCCCG
TCGATGGCCTGGTCATCCGGTCAATTTCTCCCTACCAGCTCAACTTGGTA
CAGAACTTCGTCACCACCATCCCCAAGAAGTTGAAGACTCGCTTCATCGA
GTACGGTCCGGAGGTGATGATGTGCGTGGGCCTTGTGTACGGGATTTACA
CCAGTCACAAGAAGGGCTTCGCGCAGCTCCACAAGGACCACCGGGACTAA
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