mRNA_Ecto-sp13_S_contig73480.18514.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: D8LCV8_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCV8_ECTSI) HSP 1 Score: 108 bits (271), Expect = 4.760e-28 Identity = 55/96 (57.29%), Postives = 57/96 (59.38%), Query Frame = 1
Query: 1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
LYEGGFFKAKLEFPKDFPNNPPTMTF+SEMFHPN +YPDGRVCISILHPPGEDKFNEQ
Sbjct: 48 LYEGGFFKAKLEFPKDFPNNPPTMTFISEMFHPN---------------------------------------VYPDGRVCISILHPPGEDKFNEQ 104
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A1D3CZE9_9EIME (Ubiquitin-conjugating enzyme subfamily protein n=1 Tax=Cyclospora cayetanensis TaxID=88456 RepID=A0A1D3CZE9_9EIME) HSP 1 Score: 100 bits (250), Expect = 3.500e-24 Identity = 51/103 (49.51%), Postives = 62/103 (60.19%), Query Frame = 1
Query: 1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSV-----VDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQVR 294
YEGG F+A L+FP DFPNNPP M F +M+HPNG+E L G DC + V + S V+ P ++PDGRVCISILHPPG D FNEQ +
Sbjct: 48 FYEGGIFQASLKFPPDFPNNPPEMVFEQDMWHPNGRENWLGRVGQWDCSFSTASYSRQVGALYSPSAFVFLLP----SVFPDGRVCISILHPPGHDMFNEQEK 146
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A1Z5KCD4_FISSO (Ubiquitin-conjugating enzyme E2 G2 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KCD4_FISSO) HSP 1 Score: 90.9 bits (224), Expect = 2.030e-21 Identity = 47/96 (48.96%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
LYEGGFFKAKL FP DFPN PPTMTF SEM+HPN +Y DG+VCISILHPPGED+FN+Q
Sbjct: 7 LYEGGFFKAKLVFPPDFPNMPPTMTFTSEMWHPN---------------------------------------VYTDGKVCISILHPPGEDEFNQQ 63
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A1Z5JLS8_FISSO (Ubiquitin-conjugating enzyme E2 G1 n=7 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5JLS8_FISSO) HSP 1 Score: 92.0 bits (227), Expect = 2.070e-21 Identity = 48/96 (50.00%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
LYEGGFFKAKL FP DFPN PPTMTF SEM+HPN +Y DGRVCISILHPPGED+FN+Q
Sbjct: 48 LYEGGFFKAKLVFPPDFPNMPPTMTFTSEMWHPN---------------------------------------VYTDGRVCISILHPPGEDEFNQQ 104
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A2R5G2R2_9STRA (Ubiquitin-conjugating enzyme family protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G2R2_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 2.160e-21 Identity = 47/96 (48.96%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
LYEGGFFKA LEFP D+PNNPPTM FV+ + HPN +YPDG+VCISILHPPGEDKFNEQ
Sbjct: 60 LYEGGFFKALLEFPPDYPNNPPTMRFVTPILHPN---------------------------------------VYPDGKVCISILHPPGEDKFNEQ 116
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A836CP86_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP86_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.650e-20 Identity = 46/96 (47.92%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
LYE G FKA LEFPKDFPN+PPTMTF S+M+HPN +Y DGRVCISILHPPGED+FN+Q
Sbjct: 48 LYEEGLFKATLEFPKDFPNSPPTMTFTSDMWHPN---------------------------------------VYEDGRVCISILHPPGEDRFNDQ 104
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A4D9D8W7_9STRA (UBC core domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8W7_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 2.280e-20 Identity = 46/96 (47.92%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
LYEGGFFKA+L FP DFPN PPTMTF +EM+HPN +Y DGRVCISILHPPGED+FN Q
Sbjct: 47 LYEGGFFKARLTFPSDFPNMPPTMTFQTEMWHPN---------------------------------------VYEDGRVCISILHPPGEDRFNSQ 103
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A024UPR9_9STRA (UBC core domain-containing protein n=7 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UPR9_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 9.100e-20 Identity = 46/96 (47.92%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
LYEG FFKA+LEFPKDFPN PP MTFVSEM+HPN +YP+G VCISILHPPGED+ N Q
Sbjct: 47 LYEGAFFKARLEFPKDFPNMPPKMTFVSEMWHPN---------------------------------------VYPNGVVCISILHPPGEDRMNAQ 103
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A7S2AVY1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AVY1_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.180e-19 Identity = 46/96 (47.92%), Postives = 50/96 (52.08%), Query Frame = 1
Query: 1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
+YEGGFFKA LEFP DFPN PP M FVSEM+HPN +Y DGRVCISILHPPGEDK+N Q
Sbjct: 58 MYEGGFFKATLEFPPDFPNMPPEMRFVSEMWHPN---------------------------------------VYADGRVCISILHPPGEDKYNAQ 114
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Match: A0A067CW50_SAPPC (UBC core domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CW50_SAPPC) HSP 1 Score: 86.7 bits (213), Expect = 2.570e-19 Identity = 44/96 (45.83%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 1 LYEGGFFKAKLEFPKDFPNNPPTMTFVSEMFHPNGKERLLFGGGVHDCGAVSVVDVVVVSSMLVYTQPILTADLYPDGRVCISILHPPGEDKFNEQ 288
LYEGGFF+A+LEFPKDFPN PP MTF+S+M+HPN +YP G VCISILHPPGED+ N Q
Sbjct: 47 LYEGGFFRARLEFPKDFPNMPPKMTFISDMWHPN---------------------------------------VYPSGVVCISILHPPGEDQMNAQ 103 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73480.18514.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig73480.18514.1 >prot_Ecto-sp13_S_contig73480.18514.1 ID=prot_Ecto-sp13_S_contig73480.18514.1|Name=mRNA_Ecto-sp13_S_contig73480.18514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=58bp MIVALFLLSMLSLCLRCWCILNPFLPLICTQMGGCAFRSYTHRERTSSTNback to top mRNA from alignment at Ecto-sp13_S_contig73480:10..616- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig73480.18514.1 ID=mRNA_Ecto-sp13_S_contig73480.18514.1|Name=mRNA_Ecto-sp13_S_contig73480.18514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=607bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73480:10..616- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73480:10..616- >mRNA_Ecto-sp13_S_contig73480.18514.1 ID=mRNA_Ecto-sp13_S_contig73480.18514.1|Name=mRNA_Ecto-sp13_S_contig73480.18514.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=174bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73480:10..616- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |