mRNA_Ecto-sp13_S_contig7341.18508.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7341.18508.1
Unique NamemRNA_Ecto-sp13_S_contig7341.18508.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7341.18508.1 vs. uniprot
Match: D7FRF8_ECTSI (DLH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRF8_ECTSI)

HSP 1 Score: 493 bits (1268), Expect = 1.160e-171
Identity = 235/237 (99.16%), Postives = 236/237 (99.58%), Query Frame = 1
Query:    1 AGPPVACDYTPKGTISKIGDVDTYFVGSGPKALVVVYDIFGFSPQLKQVCDMFAAAGFNVAMPDFCKGNPWPLENFPPKDRSELGAWFGTTGKWETSIRPTFIPAVAHMKEHRGAEVVGVTGFCWGGMIAMKAASLDPNAEGGVKAGGTVHPAMLSAELAQDVKVPVLIMPSGEDPDHLPVKEVLDKKPFGDKCQYRRFDDMHHGFCAARGDWANDVQATRAAEAIDAFVKFYTANL 711
            AGPPVACDYTPKGTISKIGDVDTYFVGSGPKALVVVYDIFGFSPQLKQVCDMFAAAGFNVAMPDFCKGNPWPLENFPPKDRSELGAWFGTTGKWETSIRPTFIPAVAHMKEHRGAEVVGVTGFCWGGMIAMKAASLDP+AEGGVKAGGTVHPAMLSAELAQDVKVPVLIMPSGEDPDHLPVKEVLDKKPFGDKCQYRRFDDMHHGFCAARGDWAN VQATRAAEAIDAFVKFYTANL
Sbjct:    9 AGPPVACDYTPKGTISKIGDVDTYFVGSGPKALVVVYDIFGFSPQLKQVCDMFAAAGFNVAMPDFCKGNPWPLENFPPKDRSELGAWFGTTGKWETSIRPTFIPAVAHMKEHRGAEVVGVTGFCWGGMIAMKAASLDPDAEGGVKAGGTVHPAMLSAELAQDVKVPVLIMPSGEDPDHLPVKEVLDKKPFGDKCQYRRFDDMHHGFCAARGDWANAVQATRAAEAIDAFVKFYTANL 245          
BLAST of mRNA_Ecto-sp13_S_contig7341.18508.1 vs. uniprot
Match: A0A835Z8A5_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8A5_9STRA)

HSP 1 Score: 278 bits (710), Expect = 2.380e-87
Identity = 137/237 (57.81%), Postives = 165/237 (69.62%), Query Frame = 1
Query:    1 AGPPVACDYTPKGTISKIGDVDTYFVGSGPKALVVVYDIFGFSPQLKQVCDMFAAAGFNVAMPDFCKGNPWPLENFPPKDRSELGAWFGTTGKWETSIRPTFIPAVAHMKEHRGAEVVGVTGFCWGGMIAMKAASLDPNAEGGVKAGGTVHPAMLSAELAQDVKVPVLIMPSGEDPDHLPVKEVLDKKPFGDKCQYRRFDDMHHGFCAARGDWANDVQATRAAEAIDAFVKFYTANL 711
            AGPP++ DY PKGTI+ IGD + YF GSGP+A+ +VYDIFG SPQ KQVCD  A AGF+VAMPDF +G PW LENFPPKD+ E  AW G    ++  IRP      AHM+E  GA+V G  GFCWGG IA KAA     A+G V AG  VH A ++ EL + V VP+ ++PSG+DPD  P+KEVLDKKPFG  C Y RF+DMHHGFCAARGDW+  + A RA+EA+     F   NL
Sbjct:    9 AGPPISSDYEPKGTIATIGDQEVYFSGSGPRAICIVYDIFGLSPQAKQVCDKLADAGFSVAMPDFARGQPWLLENFPPKDQGEFMAWVGKHD-FDAVIRPDMERVQAHMRETMGAKVFGAIGFCWGGSIATKAAC----AQGLVAAGAAVHYAFITPELVEGVCVPLCLLPSGDDPDTAPLKEVLDKKPFGAACVYHRFEDMHHGFCAARGDWSQPLIAQRASEAVAMLSDFMDKNL 240          
BLAST of mRNA_Ecto-sp13_S_contig7341.18508.1 vs. uniprot
Match: A0A0L0HMK7_SPIPD (DLH domain-containing protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HMK7_SPIPD)

HSP 1 Score: 196 bits (499), Expect = 1.250e-55
Identity = 106/240 (44.17%), Postives = 143/240 (59.58%), Query Frame = 1
Query:    7 PPVACDYTPKGTISKIGDVDTYFVGS-GPKALVVVYDIFGFSPQLKQVCDMFAAAGFNVAMPDFCKGNPWPLENFPPKDRSELGAWFGTTGKWETSIRPTFIPAVAHMKEHRGAEVVGVTGFCWGGMIAMKAASLDPNAEGGVKAGGTVHPAMLSAELAQDVKVPVLIMPSGEDPDHLPVKEVLDKKPFGDKCQYRRFDDMHHGFCAARGDWANDVQATRAAEAIDAFVKFYTANL*AVL 723
            PP A +Y PKG +S +GD+ TYFVG  G +A++++YDIFGF P   Q  D  AA GF VA PDF +GNPWPLE  P +   EL A           +    I +V       GAE +G  GFCWG + A++A     N EG V A    HP+ L+ E+ +DVK P+ ++PS ++PD +P+ E L +KPF DK  + RFDDMHHG+CAAR D++N   A R+ EA+    +F+   L A L
Sbjct:   36 PPFASNYQPKGQVSTVGDLPTYFVGEKGKRAIILIYDIFGFHPNTHQFADELAAKGFFVAEPDFYRGNPWPLEKVPIQ-LPELMAHLEQHVPESRMLAD--IGSVCRYLRSNGAESIGTLGFCWGAIYAIRA-----NVEGLVDASAAAHPSRLTVEIVKDVKGPLALLPSKDEPDLIPLMEALKEKPFVDKNVHVRFDDMHHGWCAARSDYSNPANARRSREALQIMARFFDETLQAKL 267          
BLAST of mRNA_Ecto-sp13_S_contig7341.18508.1 vs. uniprot
Match: A0A836BBU2_9CHLO (DLH domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BBU2_9CHLO)

HSP 1 Score: 191 bits (485), Expect = 6.920e-54
Identity = 106/235 (45.11%), Postives = 131/235 (55.74%), Query Frame = 1
Query:    1 AGPPVACDYTPKGTISKIGDVDTYFVGSGPKALVVVYDIFGFS-PQLKQVCDMFAAAGFNVAMPDFCKGNPWPLENFPPKDRSELGAWFGTTGKWETSIRPTFIPAVAHMKEHRGAEVVGVTGFCWGGMIAMKAASLDPNAEGGVKAGGTVHPAMLS--AELAQDVKVPVLIMPSGEDPDHLPVKEVLDKKPFGDKCQYRRFDDMHHGFCAARGDWANDVQATRAAEAIDAFVKF 696
            AG PV   Y PKGT +K G  D Y  G+G   LV+V DIFGF   Q+ QV D FA AGFNV   D   G PW ++ FPPK   +   W G  G W+  ++P    AVA +KE  GA   G  GFCWG  IAM+A       E      G  HPA+    A  A+ V+ PV+++P+  D D  PVK VLD++P+G KC Y+RFDD  HGF AARGDW+    A  A +AI     F
Sbjct:   10 AGAPVVSSYEPKGTFTKAGSTDVYRSGAGALGLVIVPDIFGFGHKQVFQVADRFAEAGFNVCAIDPFHGKPWTMDKFPPKPEHDFMGWIGREGSWQ-KLQPQVAAAVAKLKE-AGATKFGCIGFCWGVSIAMQAGQ-----EATFSGVGGAHPALFGKDAAFAEKVQCPVVLLPAQGDADTAPVKAVLDRRPYGSKCVYQRFDDQTHGFVAARGDWSKPEVAAAAGKAIGIMADF 237          
BLAST of mRNA_Ecto-sp13_S_contig7341.18508.1 vs. uniprot
Match: A0A1Y1Y5T6_9FUNG (Alpha/beta-hydrolase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y5T6_9FUNG)

HSP 1 Score: 190 bits (482), Expect = 1.800e-53
Identity = 99/238 (41.60%), Postives = 132/238 (55.46%), Query Frame = 1
Query:    7 PPVACDYTPKGTISKIGDVDTYFVG--SGPKALVVVYDIFGFSPQLKQVCDMFAAA-GFNVAMPDFCKGNPWPLENFPPKDRSELGAWFGTTGKWETSIRPTFIPAVAHMKEHRGAEVVGVTGFCWGGMIAMKAASLDPNAEGGVKAGGTVHPAMLSAELAQDVKVPVLIMPSGEDPDHLPVKEVLDKKPFGDKCQYRRFDDMHHGFCAARGDWANDVQATRAAEAIDAFVKFYTANL 711
            PPV  DY PKG+I KI D+  YFVG     KA+VV+YDIFGF P  KQ CD+      F VA+PDF +G PW      P+DR  L  W  + G W+ + +P       H+    G+   GV GFCWG  + + A       +G   A   +HP++L+ E A+  + P+L++PS ++PD     E+L KK FG KC Y  FDDMHHGF AARGD+ +     R  EAI     F+  N+
Sbjct:   11 PPVVSDYQPKGSIEKIDDLSVYFVGPKDAKKAVVVIYDIFGFHPNTKQFCDILGEKFNFRVALPDFFRGKPWDHTRMTPEDRPALMQWITSVGSWDNT-KPDLEKVKKHLSSS-GSTDFGVVGFCWGAKMGVLATR-----DGSFSAASLIHPSLLADEDAELAEAPILLIPSKDEPDLTKFVEILKKKSFGSKCSYHLFDDMHHGFAAARGDYNDPANVKRTTEAIQLTGDFFQNNV 241          
BLAST of mRNA_Ecto-sp13_S_contig7341.18508.1 vs. uniprot
Match: A0A2K3CV50_CHLRE (DLH domain-containing protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3CV50_CHLRE)

HSP 1 Score: 189 bits (480), Expect = 4.100e-53
Identity = 107/235 (45.53%), Postives = 133/235 (56.60%), Query Frame = 1
Query:    1 AGPPVACDYTPKGTISKIGDVDTYFVGSGPKALVVVYDIFGFS-PQLKQVCDMFAAAGFNVAMPDFCKGNPWPLENFPPKDRSELGAWFGTTGKWETSIRPTFIPAVAHMKEHRGAEVVGVTGFCWGGMIAMKAASLDPNAEGGVKAGGTVHPAMLS--AELAQDVKVPVLIMPSGEDPDHLPVKEVLDKKPFGDKCQYRRFDDMHHGFCAARGDWANDVQATRAAEAIDAFVKF 696
            AG PV  DY PKGT +K G  D Y  GSG   +V+V DIFGF   Q+ QV D FA AGFNV   D   G PW  + FPPK   +   W      W+  ++P    AVA +KE  GA   G  GFCWG  IAM+A   D +   GV   G  HPA+    A+ A+ V+ PV+++P+  D D  PV++VLDK+P+G KC Y+RFDD  HGF AARGDW     A  A +AI     F
Sbjct:   10 AGAPVVSDYEPKGTFTKAGSTDVYHSGSGALGVVIVPDIFGFGHKQVFQVADRFADAGFNVCAIDPFHGKPWTKDRFPPKPEHDFMGWLSREASWD-KLKPQIDAAVAKLKEG-GASKFGCIGFCWGVSIAMQAGQ-DGHTFSGV---GGAHPALFGHDADFAEKVQCPVVLLPAQGDADTGPVQKVLDKRPYGSKCVYQRFDDQTHGFVAARGDWTKPEVAAAAGKAIGIMTDF 238          
BLAST of mRNA_Ecto-sp13_S_contig7341.18508.1 vs. uniprot
Match: A0A835W382_CHLIN (DLH domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W382_CHLIN)

HSP 1 Score: 189 bits (479), Expect = 5.750e-53
Identity = 107/235 (45.53%), Postives = 133/235 (56.60%), Query Frame = 1
Query:    1 AGPPVACDYTPKGTISKIGDVDTYFVGSGPKALVVVYDIFGFS-PQLKQVCDMFAAAGFNVAMPDFCKGNPWPLENFPPKDRSELGAWFGTTGKWETSIRPTFIPAVAHMKEHRGAEVVGVTGFCWGGMIAMKAASLDPNAEGGVKAGGTVHPAMLSAEL--AQDVKVPVLIMPSGEDPDHLPVKEVLDKKPFGDKCQYRRFDDMHHGFCAARGDWANDVQATRAAEAIDAFVKF 696
            AG PV  +Y PKGT  K G  D Y  GSG   +V++ DIFGF   Q+ QV D FA AGFNV   D   G PW ++ FPPK   +   W G    W+  ++P    AVA +K   GA   G  GFCWG  IAM AA  D +   GV   G  HPA+   +L  A+ V+ PV+++P+  D D  PVK+VLDK+P+G KC Y+RFDD  HGF AARGDW+    A  A  AI     F
Sbjct:   10 AGAPVVSNYEPKGTFEKAGSADVYRSGSGALGVVIIPDIFGFGHKQVFQVADRFAEAGFNVCAIDPFHGKPWTMDRFPPKPEHDFKGWLGREAGWD-KLKPQVDAAVAKLKA-AGATKFGCIGFCWGVSIAM-AAGQDGHTFSGV---GGAHPALFGHDLDYAEKVQCPVVLLPAQGDADTAPVKKVLDKRPYGTKCVYQRFDDQTHGFVAARGDWSKPEVAAAAGRAIGLMADF 238          
BLAST of mRNA_Ecto-sp13_S_contig7341.18508.1 vs. uniprot
Match: A0A835W025_CHLIN (DLH domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835W025_CHLIN)

HSP 1 Score: 184 bits (468), Expect = 7.560e-51
Identity = 105/235 (44.68%), Postives = 134/235 (57.02%), Query Frame = 1
Query:    1 AGPPVACDYTPKGTISKIGDVDTYFVGSGPKALVVVYDIFGFS-PQLKQVCDMFAAAGFNVAMPDFCKGNPWPLENFPPKDRSELGAWFGTTGKWETSIRPTFIPAVAHMKEHRGAEVVGVTGFCWGGMIAMKAASLDPNAEGGVKAGGTVHPAMLSAEL--AQDVKVPVLIMPSGEDPDHLPVKEVLDKKPFGDKCQYRRFDDMHHGFCAARGDWANDVQATRAAEAIDAFVKF 696
            AG PV  +Y PKGT  + G  D Y  GSG   LV+V DIFGFS  Q+ QV D FA  GFNV + D   GNPWP+E FPPK   +   W    G W   +RP    AVA +KE   A   G  GFCW   IAM+A   +P   G    GG  HP++   +L  A+ V+ PV+++P+  D D  P+K++LD++ +G KC Y+RFDD  HGF AARGDW+    A  A  AI    +F
Sbjct:   10 AGAPVVSNYEPKGTFERAGSTDVYRSGSGALGLVLVPDIFGFSHKQVFQVADRFAETGFNVCVIDPFHGNPWPMEKFPPKPEHDFKGWLTREGGWG-KVRPHVHDAVAKLKE-ASATKFGCIGFCWSVSIAMQAGQ-EPTFSG---VGGP-HPSLFGHDLDYAEKVQCPVVLLPAEGDGDTAPIKKILDRRSYGSKCVYQRFDDQTHGFVAARGDWSKPEVAAAAGRAIGLMAEF 237          
BLAST of mRNA_Ecto-sp13_S_contig7341.18508.1 vs. uniprot
Match: A8J3U5_CHLRE (Predicted protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8J3U5_CHLRE)

HSP 1 Score: 183 bits (465), Expect = 2.750e-50
Identity = 101/235 (42.98%), Postives = 130/235 (55.32%), Query Frame = 1
Query:    1 AGPPVACDYTPKGTISKIGDVDTYFVGSGPKALVVVYDIFGFS-PQLKQVCDMFAAAGFNVAMPDFCKGNPWPLENFPPKDRSELGAWFGTTGKWETSIRPTFIPAVAHMKEHRGAEVVGVTGFCWGGMIAMKAASLDPNAEGGVKAGGTVHPAMLSAEL--AQDVKVPVLIMPSGEDPDHLPVKEVLDKKPFGDKCQYRRFDDMHHGFCAARGDWANDVQATRAAEAIDAFVKF 696
            AG PV   Y PKGT  + G  + Y  GSG   LV+V D+FGF+  Q+ QV D FA AGFNV + D   GNPWP++ FPPK   +   W      W   +RP     VA +KE  GA   G  GFCWG  IAM+A       E      G  HPA+   +L   + V+ PV+++P+  D D  P+K++LD++P+G KC Y+RFDD  HGF AARGDW     A  A +AI     F
Sbjct:   12 AGAPVVSTYEPKGTFERAGSTEIYHSGSGALGLVMVPDVFGFAHKQVFQVADRFADAGFNVCVMDPFHGNPWPMDKFPPKPEHDFQGWLTREAGWG-KMRPHVHDVVAKLKEG-GASKFGCIGFCWGVSIAMQAGQ-----ETTFSGVGGAHPALFGHDLDYTEKVQCPVVLLPAQGDADTAPIKKILDRRPYGSKCVYQRFDDQTHGFVAARGDWTKPEVAAAAGKAIGIMADF 239          
BLAST of mRNA_Ecto-sp13_S_contig7341.18508.1 vs. uniprot
Match: A0A836BBS3_9CHLO (DLH domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A836BBS3_9CHLO)

HSP 1 Score: 182 bits (462), Expect = 7.100e-50
Identity = 100/235 (42.55%), Postives = 131/235 (55.74%), Query Frame = 1
Query:    1 AGPPVACDYTPKGTISKIGDVDTYFVGSGPKALVVVYDIFGFS-PQLKQVCDMFAAAGFNVAMPDFCKGNPWPLENFPPKDRSELGAWFGTTGKWETSIRPTFIPAVAHMKEHRGAEVVGVTGFCWGGMIAMKAASLDPNAEGGVKAGGTVHPAMLSAEL--AQDVKVPVLIMPSGEDPDHLPVKEVLDKKPFGDKCQYRRFDDMHHGFCAARGDWANDVQATRAAEAIDAFVKF 696
            AG PV   Y PKGT  + G  D Y +G+G   +V+V DIFGF   Q+ QV D FA AGFNV + D   GNPW ++ FPPK   +   W      W   +RP    AVA +KE  GA   G  GFCWG  IAM+A       E      G  HP++   +L  A+ V+ PV+++P+  D D  P+K++LD++ +G KC Y+RFDD  HGF AARGDW+    A  A +AI     F
Sbjct:   10 AGAPVVSTYEPKGTFERAGSTDVYLIGAGALGVVLVPDIFGFGHKQVFQVADRFAEAGFNVCVMDPFHGNPWTMDKFPPKPEHDFKGWLAREAGWGR-MRPHVHDAVAKLKE-AGATKFGCIGFCWGVSIAMQAGQ-----EATFSGVGGPHPSLFGHDLDFAEKVQCPVVLLPAEGDADTAPIKKILDRRAYGSKCVYQRFDDQTHGFVAARGDWSKPEVAAAAGKAIGIMADF 237          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7341.18508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRF8_ECTSI1.160e-17199.16DLH domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z8A5_9STRA2.380e-8757.81Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A0L0HMK7_SPIPD1.250e-5544.17DLH domain-containing protein n=2 Tax=Spizellomyce... [more]
A0A836BBU2_9CHLO6.920e-5445.11DLH domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A1Y1Y5T6_9FUNG1.800e-5341.60Alpha/beta-hydrolase n=1 Tax=Basidiobolus meristos... [more]
A0A2K3CV50_CHLRE4.100e-5345.53DLH domain-containing protein n=2 Tax=Chlamydomona... [more]
A0A835W382_CHLIN5.750e-5345.53DLH domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A835W025_CHLIN7.560e-5144.68DLH domain-containing protein n=1 Tax=Chlamydomona... [more]
A8J3U5_CHLRE2.750e-5042.98Predicted protein n=2 Tax=Chlamydomonas reinhardti... [more]
A0A836BBS3_9CHLO7.100e-5042.55DLH domain-containing protein n=1 Tax=Chlamydomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7341contigEcto-sp13_S_contig7341:1208..5834 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score390.2
Seed ortholog evalue5.5e-106
Seed eggNOG ortholog2880.D7FRF8
Model size1554
KEGG rclassRC01018,RC01906,RC01907,RC02441,RC02467,RC02468,RC02674,RC02675,RC02686
KEGG koko:K01061,ko:K14515,ko:K18272
KEGG ReactionR03893,R05510,R05511,R06835,R06838,R08120,R08121,R09136,R09220,R09222
KEGG Pathwayko00361,ko00364,ko00623,ko01100,ko01110,ko01120,ko01130,ko04016,ko04075,map00361,map00364,map00623,map01100,map01110,map01120,map01130,map04016,map04075
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.Dienelactone hydrolase family
EggNOG OGsCOG0412@1,KOG3043@2759
Ec32 ortholog descriptionAlpha/Beta hydrolase fold
Ec32 orthologEc-08_000790.1
EC3.1.1.45
Cds size561
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7341.18508.1prot_Ecto-sp13_S_contig7341.18508.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7341 1956..4854 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464002.4212434-UTR-Ecto-sp13_S_contig7341:1207..12861681464002.4212434-UTR-Ecto-sp13_S_contig7341:1207..1286Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7341 1208..1286 +
1681464002.4354594-UTR-Ecto-sp13_S_contig7341:1679..17441681464002.4354594-UTR-Ecto-sp13_S_contig7341:1679..1744Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7341 1680..1744 +
1681464002.4507449-UTR-Ecto-sp13_S_contig7341:1946..19551681464002.4507449-UTR-Ecto-sp13_S_contig7341:1946..1955Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7341 1947..1955 +
1681464002.5078332-UTR-Ecto-sp13_S_contig7341:4854..49531681464002.5078332-UTR-Ecto-sp13_S_contig7341:4854..4953Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7341 4855..4953 +
1681464002.5193856-UTR-Ecto-sp13_S_contig7341:5093..58341681464002.5193856-UTR-Ecto-sp13_S_contig7341:5093..5834Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7341 5094..5834 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464002.4642253-CDS-Ecto-sp13_S_contig7341:1955..20441681464002.4642253-CDS-Ecto-sp13_S_contig7341:1955..2044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7341 1956..2044 +
1681464002.4735672-CDS-Ecto-sp13_S_contig7341:2818..30621681464002.4735672-CDS-Ecto-sp13_S_contig7341:2818..3062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7341 2819..3062 +
1681464002.4830348-CDS-Ecto-sp13_S_contig7341:3812..39551681464002.4830348-CDS-Ecto-sp13_S_contig7341:3812..3955Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7341 3813..3955 +
1681464002.4926617-CDS-Ecto-sp13_S_contig7341:4769..48541681464002.4926617-CDS-Ecto-sp13_S_contig7341:4769..4854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7341 4770..4854 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7341.18508.1

>prot_Ecto-sp13_S_contig7341.18508.1 ID=prot_Ecto-sp13_S_contig7341.18508.1|Name=mRNA_Ecto-sp13_S_contig7341.18508.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp
MFAAAGFNVAMPDFCKGNPWPLENFPPKDRSELGAWFGTTGKWETSIRPT
FIPAVAHMKEHRGAEVVGVTGFCWGGMIAMKAASLDPNAEGGVKAGGTVH
PAMLSAELAQDVKVPVLIMPSGEDPDHLPVKEVLDKKPFGDKCQYRRFDD
MHHGFCAARGDWANDVQATRAAEAIDAFVKFYTANL*
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mRNA from alignment at Ecto-sp13_S_contig7341:1208..5834+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7341.18508.1 ID=mRNA_Ecto-sp13_S_contig7341.18508.1|Name=mRNA_Ecto-sp13_S_contig7341.18508.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4627bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7341:1208..5834+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGTCCTCCAGTCGCGTGTGATTACACCCCCAAAGGCACCATCTCCAA GATCGGGGACGTCGACACGTACTTCGTCGGTCAGTACCTGCGTACCTTAG GCTAGCCTCGCTCGGATATGTATGTGTGTTCACACCACGTACATATGTAG AAATGATACCCCGGGAGTAGCCCTACCCTCAACCAAAGCTCTTTTCCTTT TGCTATTTAGAGGCTACTCACACCAGAAGCTTATGTAGAAAAATGTTTGA GATTTGCGATTCTATAACGATCCAACAAACACGGGCTAGGCTGTCTCATT GTTGTGTGCGCTGTTATCCCTTCTATTTTGGACGTCACAGTACACACCGG GCTAGTGGAATAGCATCACTTGCTGACTTACTGATGCACGTGTTGCTGAG CCTACCTCATTTTTTTTTTTAATTTTGGCATCGAATTCTACGGCTACCTT TTTCTTGCACACACCTCCGCAGGGTCTGGCCCCAAGGCCCTTGTGGTCGT GTACGACATCTTCGGCTTCAGCCCTCAACTCAAACAGGTGCCCGGTCCAC AGCACTTTTGCTTGGTCTATCGAGATAGCACACGGTGTGTTTGCCCCCTT GGATGTACAATAGTACAATGCCGCTTTCTCTGAACATTTCCCGTGCCGGG AGATGCTCGAACTCGAACCCCACTTGCACGGTAACTTCTGCGTTGGTTGC CTTGTGTCTGCCATCTGCCGAAACTTTTACGAGACATAGGTCTGCGACAT GTTCGCGGCCGCCGGCTTCAATGTAGCCATGCCCGACTTTTGCAAGGGAA ACCCTTGGCCTCTAGAAAACTTCCCGCCTAAGGACAGGTGAGTCTCGCTG GACGATCATCTTGTTTAAGCAAGTCTTTGGAACTCCCTTGATGTGGAATA AACGTCAAACGTCAACACCAAGGCCGACCAAGCACCCAAAGCTTAGGTGG CTGAGTACTCAGGTTAATATGGCGTATCTGCAGCCATTTTCTACTGCAGA ATAATTCGATGCTAACCGAAACATCACATGGCCTCTCGGGGGTGATCGGC CGAAACAATCGCGACCATCCTTTAACATATGTGGCGTAGTGACATTTGGC TGAATCGGCGAAAGCCTAACGCTGTAGTACCCCCCCCCCCCCTTCTGTGC GGGGTGGAGAATCCTTGCTCCGCGAAAGGGGCATGATCGCATCACGTTGT GTTAAAATGGTCAAGCACCCTCGAGACAGTTACACAGAGCTTACAACTGT CTCTGGAAGTGAAAGCACCAGAAAATAAATTAAGTCATACGCAGCTTTCA TCCGTACCCAAGGAAGTAAGCACAAGATGCCGAATACCCTTAGCAGGATG CAGCGCACCCTTCATGCGGCTCGCCGAATACCTCACGGCGCTTCGCGCTT GGTGATGTGAGAGCCTGGTCCGGCGAGAACCTGGCGTGCTCCGTCCCGGC TTTGTAGGGATGCGAAGCCAATGGTCTAACGACTACGGTATGCACGACTA TGAGTACACCCCCCCCCTCCCTTCACCCTCCGTGGTCAATCGTGGTCAAT CCTTCAGCAACTAAGGCATGCAAAACATGAATACGCCCCCCCCTCCCGTA TATGTATTCAGGAGCGAACTCGGGGCGTGGTTCGGTACCACCGGGAAATG GGAGACGTCCATCCGCCCTACGTTCATCCCCGCTGTTGCCCACATGAAGG AGCACCGGGGGGCCGAAGTGGTCGGGGTGACGGGCTTCTGCTGGGGAGGC ATGATCGCCATGAAAGCCGCGTCTCTAGACCCTAACGCCGAGGGAGGCGT CAAGGCGGGCGGCACTGTGCACCCGGCCATGCTCTCGGCGGAACTCGCGC AAGACGTGAGGCAAGGGGGGGATGGGGGGGGAGAGGCGGGTACTCTTAGC CGTACATGCCGTAGTAGTTAAGACCATTGACCTCACAGCATAGAGGGGGA CAGGCTGTCGCGCTTGTAGTCTTGGAGATGATGCGGCCTCAACGCAGGGA GGCAGTCCTTGTTTCGTGTTGTGCGCCAGTTTCTCTATAATAGGACGATG GTAGTAGACACATGCCAGTGAGATAAGGGGGGTGTTGGTTGCTGACCGGC GTTGCCGCATCCCGCGAGAGGAAAAGAGGGGAGAGAGGAGGAAGGGACGA GACGGGGGGTACCAGACAGACAGATGAGCACCTTTTTTGGAGTCTTCTCT CGAGAGTTTCCGAGAGAATCGCGCCGTTGGACGTTCCGCTCCTCTGGGAG CTGGACGAATAACCGGTTTGACAAGAGGTTGATTGTTCTTGGAGTGCTCT CGTCCCATCAGACATAGGCTATCCCTCTTTTTTTCGATGTTACGAGAACG TGCCGATGTTGATCATGCCCGGGCCTGCCATACGCCGTGCAAAATGGTTT TTTTGTATTGACCGTTTTTTGTTGGGGGGGAGGGGGCAGAGGTAAGGTGC CCATTCCGGAACCCCTTTTTCGTTTTCAACCGTTTTTGTTGTTGACCACG TGAATGTACCCATATCGAAACCGTTGTTTTCTTGTTCTTGCAAAGGTTCA GGTGCCCATGCTGAAACCGTTTTTTCTTTTCGTGACCTATTTTTCTTTTG GCCAGGTTAAGGTACCCGTGCTGATCATGCCGTCAGGGGAGGACCCCGAC CACCTCCCCGTGAAGGAGGTCTTGGACAAGAAGCCGTTCGGCGACAAGTG CCAGTACCGCCGGTTCGACGACATGCACCACGGATTCTGCGCGGCCAGGT ATGTATGTCGACTTACGCATGTAGATCGGCACCATCTATATCTGGCGAAG CTCTCCATGCGATGCTCGATTTAGCGTATGTCGGCAGGGTTGCGTTGGCG CCTGTCTGAATAGTTTGGGTGTCATATCTATGAACGGTGTTTCTTCAAAC AGCGTCGAACATGCTCGCATCAACGAGCGGGACAACTTTTGATAGGTCCG GCCGTATTTTCGATACCCGTTCTTGGTTCGTATAGATGGACCGCGTACAC ACGGAAAAATAAATCGACGGGTAAGAAACTCCTGTAAACTTATTTTGACG CACCGTATCTTCTTCCGGCGGCGAGCTGGGGAAAATAACTTTCTTGGAGG CATGCATGGTCGAAATGTCCTGGCAGCTCTCTTTCGTCGTACAGCCCTTT TGTTTCGCCGCCCTAGATCAGCGCGCCATGGCTCACAGCATTTCTGCCGG GTAGGAGCTCCACTAGCTTTCGAACTGCCAACATGGATGGCACGGCCCGA TTCTTTTCTTCGGCCTTTCCCCGCTCTCCTCGTTGTCACGATCGAATTTC TTACAATTTCTCTCAATATATACGCACAACATCAAACAGATATTGTCGAA CGGGTGTATTCATGTCTTGGTTACGTCTTTAATGTCACGGTTAGGGGAAC CTGATACTGGGCTAATCTGACACGATATCAAATAGAGGCTACCCTTTCGA CACATTACCCCGCTCGAAAAGAGATGTTGAAGTCTGACGGTTGAGGGTAA GCTGCTGGATGATGAGACTGGACTAAATTATCTGCCTGGGTATTGCTGTC GCTGCGCGTCAGGGGCGACTGGGCGAACGATGTGCAAGCGACTAGGGCCG CCGAGGCTATCGACGCGTTCGTCAAGTTTTACACTGCCAATCTCTAGGCG GTACTCTTCACCCCGATGGGTAGAGCATCTGCTTGCCCGAGTCGGTGTTT GTTTCAAATTGTTTTATAAGCAAGCCGACGAATATCGTCGCTACTGAATC TATGATAATGTATGCGATGGGGTACAAGTCAGAGCAAAGGTAGGGCGAGA GATGGGGCAGTTCCCACTATTGTGCCGTGGTATACGCCCCCCCCTCCCCA AGCATTTCATTGATGCATCCTCCTCGTAATGGAGTAATTGAGGCTTGAAG ACAGGTTCAGGGGGGGTGGTATCTTGTGTCACCTGCGGAATTCCCCAGGT ATTCCTTCCGCAGTGTTGTAGCCGCAGTCACCTCGGTTGGTAGGAGGCAC GACTCATACTTTTTGCCGATGAAACCTCCTCGGTGATTCGTCTCCCTTGA ACAACGGAGAGACTTCGACTCGTCCCCGGTCCCCTTGAAAACGGCGATTT TTTGTTGGGCCGTTGGTTGGGGGTTTCTTGGCATGCAATGATGGGAAACA CCCTATCCAGTAGGCAGGATATTTTAACGTGCGAACAGTCCAGCAACGAA GGGAGTTCGGCTCGTCTGTTGATTGGGGGATCCGTGAGATGCAAAGAGGG GGGATAGCAACGCAGGTAGGCCGGATGATATTGTGCAGCGCCGGATGTGT GTGCGAACGGTCCAGCGTCCGTCTTGCCCCGGCTTCGGTGCGTTGTCCCT GCTAGGGTACTTTCTTCTCGCGGTGTTGAGGAACTTCTTCAGGTGGTGTT GGTTTGGCTTCGTTCCCTAGCCGTCTGTGAGAAGAATATGCTTCCGCAGA GCCTTAGGGAAACGAGATCCGTGCTGAAATAGCTTGCCCGTAGCAACGTG TCTTCATGTAAGTGTCTGATTGAAGGTTTTATCGAAGTGTCTGTATATAA ACCGTTTCAGTCGACGGTACCACATTTTGGTGCGATGTGGTTTTGCTTCG CAGCACAGAGAAACAACGGAGCGATTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7341:1208..5834+

>mRNA_Ecto-sp13_S_contig7341.18508.1 ID=mRNA_Ecto-sp13_S_contig7341.18508.1|Name=mRNA_Ecto-sp13_S_contig7341.18508.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7341:1208..5834+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGCGGCCGCCGGCTTCAATGTAGCCATGCCCGACTTTTGCAAGGG
AAACCCTTGGCCTCTAGAAAACTTCCCGCCTAAGGACAGGAGCGAACTCG
GGGCGTGGTTCGGTACCACCGGGAAATGGGAGACGTCCATCCGCCCTACG
TTCATCCCCGCTGTTGCCCACATGAAGGAGCACCGGGGGGCCGAAGTGGT
CGGGGTGACGGGCTTCTGCTGGGGAGGCATGATCGCCATGAAAGCCGCGT
CTCTAGACCCTAACGCCGAGGGAGGCGTCAAGGCGGGCGGCACTGTGCAC
CCGGCCATGCTCTCGGCGGAACTCGCGCAAGACGTTAAGGTACCCGTGCT
GATCATGCCGTCAGGGGAGGACCCCGACCACCTCCCCGTGAAGGAGGTCT
TGGACAAGAAGCCGTTCGGCGACAAGTGCCAGTACCGCCGGTTCGACGAC
ATGCACCACGGATTCTGCGCGGCCAGGGGCGACTGGGCGAACGATGTGCA
AGCGACTAGGGCCGCCGAGGCTATCGACGCGTTCGTCAAGTTTTACACTG
CCAATCTCTAG
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