mRNA_Ecto-sp13_S_contig7328.18496.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7328.18496.1
Unique NamemRNA_Ecto-sp13_S_contig7328.18496.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7328.18496.1 vs. uniprot
Match: A0A6H5LDY8_9PHAE (DAO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDY8_9PHAE)

HSP 1 Score: 603 bits (1556), Expect = 4.530e-213
Identity = 337/359 (93.87%), Postives = 344/359 (95.82%), Query Frame = 3
Query:   66 MKGRRVPIRGIVPLVLCASAAARMPLAGKMAFANQAMFSSCCSRKGRATVRGSXXXXXXXXXXXXXXXVAADEDLDAAVKAAVGALPSRPRVAVVGGGFAGLAAAYHLAAFGSDVTVFDPHEAGTGSGASSVAAGLLHPLTPRGKLIWKGEEGFEAAKHLIQTVNDKLVDDAA-AAGDDAAQANGPRGCLTTDNVYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIMKAVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAADADSNASGDSGGGDDGASSSPSRKEGATWVRQSVEDVHALAASGEFNAVVACVGAGVRALAGVKDIVSLRLVRGQALLYDNVGAARAAE 1139
            MKGRRVPIRGIVPLVLCASAAARMPLAGKMAFANQAMFSSCCSRKGRAT R S    XXXXXXXXXXX A DE+LDAAVKAAVGALPSRPRVAVVGGGFAGLAAAYHLAAFGSDVTVFDPHEAGTGSGAS+VAAGLLHPLTPRGKLIWKGEEGFEAAKHLIQTVNDKLV DAA AAGDDAA ANGPRGCLTTD+VYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIM+AVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAAD D NA+GD+ GGD+GASSSPSRKEGATWVRQSVEDVHALAASGEFNAVVACVGAGVRALAGVKDIVSLRLVRGQ LLYDNVGAARAAE
Sbjct:    1 MKGRRVPIRGIVPLVLCASAAARMPLAGKMAFANQAMFSSCCSRKGRATSRASCSSSXXXXXXXXXXXXA-DENLDAAVKAAVGALPSRPRVAVVGGGFAGLAAAYHLAAFGSDVTVFDPHEAGTGSGASTVAAGLLHPLTPRGKLIWKGEEGFEAAKHLIQTVNDKLVHDAAVAAGDDAAPANGPRGCLTTDSVYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIMEAVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAADVDRNANGDTSGGDNGASSSPSRKEGATWVRQSVEDVHALAASGEFNAVVACVGAGVRALAGVKDIVSLRLVRGQTLLYDNVGAARAAE 358          
BLAST of mRNA_Ecto-sp13_S_contig7328.18496.1 vs. uniprot
Match: D7FNS1_ECTSI (DAO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNS1_ECTSI)

HSP 1 Score: 436 bits (1122), Expect = 1.860e-149
Identity = 230/241 (95.44%), Postives = 236/241 (97.93%), Query Frame = 3
Query:  369 LAAAYHLAAFGSDVTVFDPHEAGTGSGASSVAAGLLHPLTPRGKLIWKGEEGFEAAKHLIQTVNDKLVDDAAAA-GDDAAQANGPRGCLTTDNVYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIMKAVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAADADSNASG-DSGGGDDGASSSPSRKEGATWVRQSVEDVHALAASGEFNAVVACVGAGVRALAGVKDIVSLRL 1085
            +AAAYHLAAFGSDVTVFDPHEAGTGSGASSVAAGLLHPLTPRGKLIWKGEEGFEAAKHLIQTVNDKLVDDAAAA GDDA+ ANGPRGCLTT++VYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIM+AVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAADAD NASG DS GGDDGASSSPSRKEGATWVRQSVEDVHALAASGEFNAVVACVGAGV+ALAGVKDIVSLRL
Sbjct:    1 MAAAYHLAAFGSDVTVFDPHEAGTGSGASSVAAGLLHPLTPRGKLIWKGEEGFEAAKHLIQTVNDKLVDDAAAAAGDDASPANGPRGCLTTNSVYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIMEAVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAADADRNASGGDSSGGDDGASSSPSRKEGATWVRQSVEDVHALAASGEFNAVVACVGAGVKALAGVKDIVSLRL 241          
BLAST of mRNA_Ecto-sp13_S_contig7328.18496.1 vs. uniprot
Match: A0A835YVN0_9STRA (DAO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVN0_9STRA)

HSP 1 Score: 150 bits (380), Expect = 5.100e-38
Identity = 81/162 (50.00%), Postives = 105/162 (64.81%), Query Frame = 3
Query:  369 LAAAYHLAAFGSDVTVFDPHEAGTGSGASSVAAGLLHPLTPRGKLIWKGEEGFEAAKHLIQTVNDKLVDDAAAAGDDAAQANGPRGCLTTDNVYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIMKAVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACR 854
            LA AY+L +FG+ VTV+D HEAG G GAS+VAAG+LHPLTPRGKLIW G+EG  AA   I+         A  A   AA     +  +T   + RP+MD +  D++ KAA   PQW+  LT EE+  A PG++P+ L GV I GA+A+D+  YL+GLW ACR
Sbjct:   35 LATAYNLVSFGACVTVYDDHEAGDG-GASAVAAGMLHPLTPRGKLIWGGKEGLAAAMDHIEA--------ATRALHSAALLPRDQTLITAQRIVRPIMDARAHDMYAKAAAANPQWLRWLTTEELCDAAPGTSPDALAGVEIAGAIAIDSRLYLRGLWEACR 187          
BLAST of mRNA_Ecto-sp13_S_contig7328.18496.1 vs. uniprot
Match: A0A7S3K454_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K454_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.870e-24
Identity = 93/269 (34.57%), Postives = 121/269 (44.98%), Query Frame = 3
Query:  339 VAVVGGGFAGLAAAYHLAAFGSDVTVFDP--------HEAGTGSGASSVAAGLLHPLTPRGKLIWKGEEGFEAAKHLIQTVNDKLVDDAAAAGDDAAQANGPRGCLTTDNVYRPLMDEKQVDLFTKAAEDL-PQWVESLTREEIMKAVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAADADSNASGDSGGGDDGASSSPSRKEGATWVRQSVEDVHALAASGEFNAVVACVGAGVRALAGVKDIVSLRLVRGQALLYDNV 1118
            VAV+GGG  GL   YHL A G  VTV D         ++ G    AS+VAAGLLHPL+PR K+ W GEE ++ A  LIQ           AAG D          +T+  VYRP  D++  D  TKAA  L P+ +E L    +  AVP S     GGVRI  A  +DA  Y+  LW AC                                GA W  + + ++      GEF+ V+ C GA       + D  SL  +RGQ++   +V
Sbjct:   11 VAVIGGGLCGLGTTYHLLARGHHVTVIDGACNRGVAINDNGHFRTASAVAAGLLHPLSPRLKMTWCGEEAYDMAFELIQ-----------AAGSDQI--------VTSSEVYRPCRDDEDRDAVTKAASKLGPKELEILDANTLTAAVPWSAMTRFGGVRIVRARVIDAQRYMSLLWKACECR-----------------------------GAVWQFRQISNIDEFYLQGEFDRVIFCGGASGLGNKLLGDQTSL--IRGQSVKLHSV 229          
BLAST of mRNA_Ecto-sp13_S_contig7328.18496.1 vs. uniprot
Match: A0A7S3VE17_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VE17_9STRA)

HSP 1 Score: 109 bits (272), Expect = 1.790e-23
Identity = 71/179 (39.66%), Postives = 95/179 (53.07%), Query Frame = 3
Query:  339 VAVVGGGFAGLAAAYHLAAF--GSDVTVFDPHEAGTGSGASSVAAGLLHPLTPRGKLIWKGEEGFEAAKHLIQTVNDKLVDDAAAAGDDAAQANGPRGCLTTDNVYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIMKAVPGSTPECLGGVRI-RGALAVDAPTYLKGLWSACRALVN 866
            +A+VGGG AG++AAYHL     GS +T+ D    G G GAS+VA GLLHP +PRGKL+  G EG  AA  LI                 AA  + P  C+  D +YR  + EK VD     A   P++   ++ +EI      S+   LGGV    G   +  PTY++GLWSAC+ + N
Sbjct:   55 IAIVGGGLAGMSAAYHLLEKIQGSSITIIDKAGPGEG-GASAVAGGLLHPFSPRGKLLHLGVEGLNAANRLIG----------------AANRHQPN-CVLRDQLYRVALTEKNVDQLKDTANLYPKYATWVSPDEIESNCRPSSDSILGGVLFSNGCKVIHVPTYIQGLWSACQEMSN 215          
BLAST of mRNA_Ecto-sp13_S_contig7328.18496.1 vs. uniprot
Match: A0A7S3QF33_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QF33_9STRA)

HSP 1 Score: 109 bits (272), Expect = 7.420e-23
Identity = 71/179 (39.66%), Postives = 95/179 (53.07%), Query Frame = 3
Query:  339 VAVVGGGFAGLAAAYHLAAF--GSDVTVFDPHEAGTGSGASSVAAGLLHPLTPRGKLIWKGEEGFEAAKHLIQTVNDKLVDDAAAAGDDAAQANGPRGCLTTDNVYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIMKAVPGSTPECLGGVRI-RGALAVDAPTYLKGLWSACRALVN 866
            +A+VGGG AG++AAYHL     GS +T+ D    G G GAS+VA GLLHP +PRGKL+  G EG  AA  LI                 AA  + P  C+  D +YR  + EK VD     A   P++   ++ +EI      S+   LGGV    G   +  PTY++GLWSAC+ + N
Sbjct:   55 IAIVGGGLAGMSAAYHLLEKIQGSSITIIDKAGPGEG-GASAVAGGLLHPFSPRGKLLHLGVEGLNAANRLIG----------------AANRHQPN-CVLRDQLYRVALTEKNVDQLKDTANLYPKYATWVSPDEIESNCRPSSDSILGGVLFSNGCKVIHVPTYIQGLWSACQEMSN 215          
BLAST of mRNA_Ecto-sp13_S_contig7328.18496.1 vs. uniprot
Match: A0A7S2UXM2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXM2_9STRA)

HSP 1 Score: 106 bits (265), Expect = 5.340e-22
Identity = 89/287 (31.01%), Postives = 128/287 (44.60%), Query Frame = 3
Query:  336 RVAVVGGGFAGLAAAYHL---------------------------AAFGSDVTVFDPHEAGTGSGASSVAAGLLHPLTPRGKLIWKGEEGFEAAKHLIQTVNDKLVDDAAAAGDDAAQANGPRGCLTTDNVYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIMKAVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAADADSNASGDSGGGDDGASSSPSRKEGATWVRQSVEDVHALAASGEFNAVVACVGAGVRALAGVKDIVSLRLVRGQALLYDN 1115
            ++ +VGGG AGL  AY L                              G  VT+ DP   GTG GAS+ AAGLLHPLTPRG+L W+  E  E A ++++  +  L +  A  G          GC+T   V RPL  ++ V+ FT A E  P+ +  +   E    V            IR  L +D P YL+GLW AC+    A                 AS S  R +  + V ++ + V       +++ VV   GAG+ A   +K + + +LVRGQ LL+++
Sbjct:   72 KICIVGGGLAGLGVAYQLLFAESWLHSADEIHDQAVQERGKEGAPVDSGVQVTILDPCPPGTG-GASAAAAGLLHPLTPRGRLGWRASEAMEVALNMVEVADGALKE--ATGG----------GCVTCRRVIRPLFTDRHVETFTDAQERFPEELTWMDANEYADTVGLLDESVQAAADIRQGLGLDTPAYLRGLWLACQGTGRATWVPQRL----------ASLSRERSDEESNVERA-DAVELADLVEKYDTVVLAAGAGMMAFEELKGLPT-KLVRGQTLLFEH 333          
BLAST of mRNA_Ecto-sp13_S_contig7328.18496.1 vs. uniprot
Match: K8YPY8_NANGC (DAO domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YPY8_NANGC)

HSP 1 Score: 105 bits (261), Expect = 3.370e-21
Identity = 86/263 (32.70%), Postives = 127/263 (48.29%), Query Frame = 3
Query:  324 PSRPRVAVVGGGFAGLAAAYHLAAFGSDVTVFDPHEAGTGSGASSVAAGLLHPLTPRGKLIWKGEEGFEAAKHLIQTVNDKLVDDAAAAGDDAAQANGPRGCLTTDNVYRPLMDEKQVDLFTKAAEDLPQWVESLTREEIMK--AVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAADADSNASGDSGGGDDGASSSPSRKEGATWVRQSVEDVHALAASGEFNAVVACVGAGVRALAGVKDIVSLRLVRGQALL 1106
            PS  +VAVVGGG AGL+ A+HL      V++FDP   G    AS+VA GLLHPLTP+ +L+W G  GFEA   L+ +    L +    AG  A++     G +      RP +  + V  F  AA+ LP W++ L  EE  +   VPG       G+ +R +  +  P YL+GLW + +A                      SS+    E + +    V+   A     +++ VV   GAG+RA   ++ +  +  VRG+ LL
Sbjct:   51 PSNLKVAVVGGGLAGLSTAWHLTGLVKQVSIFDPRPPGQAE-ASAVAGGLLHPLTPKNRLLWCGLRGFEATSRLVVSSKTALSNYGDTAG--ASRLQSAPGAI-----LRPALTSQHVIDFQAAAKRLPNWLKWLNGEEWEQKVGVPGH------GLLLRQSAILSMPDYLRGLWLSSQARAER------------------SSTALTWESSLFTADCVKQSGA-----KYDVVVLASGAGIRAFPELEHL-PVEFVRGRTLL 275          
BLAST of mRNA_Ecto-sp13_S_contig7328.18496.1 vs. uniprot
Match: A0A7R9XSU7_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus sp. 'lucimarinus' TaxID=242159 RepID=A0A7R9XSU7_9CHLO)

HSP 1 Score: 104 bits (260), Expect = 3.500e-21
Identity = 99/286 (34.62%), Postives = 127/286 (44.41%), Query Frame = 3
Query:  336 RVAVVGGGFAGLAAAYHLA----AFGSDVTVFDPHEAGTGSGASSVAAGLLHPLTPRGKLIWKGEEGFEAAKHLIQT----------VNDKLVDDAAAAG-DDAAQANGPRG---CLTTDNVYRPLMDEKQVDLFTKAA------EDLPQWVESLTREEIMKAVPG------------STPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAADADSNASGDSGGGDDGASSSPSRKEGATWVRQSVEDVHALAASGEFNAVVACVGAGVRALAGVKDI-VSLR 1082
            RVAVVGGGFAG+AAA+       A G  V +     AG G GAS VAAGLLHP TPRGK IW+GEEG   A+ L+            +  +  DDA     DDA +  G R      +   + RP    KQ   F   A      +D    V+ +T +E++   PG            +   C GG+ +   + VDAP YL  LW AC  L +   A +                      AT     ++DV AL    EF+ V  C GAGV AL   + I VSL+
Sbjct:   18 RVAVVGGGFAGVAAAFRTLEEANARGRAVELTLIDGAGVGGGASGVAAGLLHPYTPRGKTIWRGEEGAARARRLLDAAARAEDAMDAMGAERSDDADGGWRDDAGRNTGERRGERVASAPGIVRPARSAKQGRDFAANAGRGDDDDDAAFAVKRVTTDEVVAMCPGLEFTSDVIEAERNGEACAGGMFVPNGVVVDAPRYLTALWDACGILASRGAAGTR---------------------ATLRIAEIDDVKALL--DEFDQVALCCGAGVAALFDFETIPVSLQ 280          
BLAST of mRNA_Ecto-sp13_S_contig7328.18496.1 vs. uniprot
Match: A0A7S0JJZ7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JJZ7_9EUKA)

HSP 1 Score: 103 bits (257), Expect = 4.150e-21
Identity = 96/288 (33.33%), Postives = 134/288 (46.53%), Query Frame = 3
Query:  294 AAVKAAVGALPSRPRVAVVGGGFAGLAAAYHLAAFGSDVT----------VFDPHEAGTGSGASSVAAGLLHPLTPRGKLIWKGEEGFEAAKHLIQTVNDKLVDDAAAAGDDAAQANGPRGCLTTDNVYRPLMDEKQVDLFTKAAEDLPQWVES-LTREEIMKAVPGSTPECLGGVRIRGALAVDAPTYLKGLWSACRALVNAADADSNASGDSGGGDDGASSSPSRKEGATWVRQSVEDVHALAAS-GEFNAVVACVGAGVRALAGVKDIVSLRLVRGQALLYDNVG 1121
            AA +A   A P+  RVAVVGGG AGLA +YHL    +  T          VFD      G GAS+VAAGLLHP +P+G+ +W+GEEGFEAA+ +I+           AAG D +   G    L   N       E+  +L +   + L   +E  L   E    +     + +G      AL +D  +YLK LW AC  L               GG           E  +W RQS+  + ++ AS G ++ +V   G+G + +A ++ +  LRL RGQ LL    G
Sbjct:   69 AAPRARAHARPAPMRVAVVGGGLAGLAVSYHLLNQSATCTGGAPLIECLHVFDAAPPSEG-GASAVAAGLLHPFSPKGRALWRGEEGFEAAQDMIRAAE-------RAAGKDVSACTG---LLRLANHA-----EQAAELRSNVEQQLKGPLEQRLLSMESASDLAKHPLDAIGFSHAPWALTLDTRSYLKALWHACCNL---------------GG-----------EAVSWRRQSISSIQSVQASHGPYDVIVVAAGSGCKGMAELRQL-PLRLCRGQNLLLQADG 313          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7328.18496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LDY8_9PHAE4.530e-21393.87DAO domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FNS1_ECTSI1.860e-14995.44DAO domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YVN0_9STRA5.100e-3850.00DAO domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3K454_9STRA1.870e-2434.57Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3VE17_9STRA1.790e-2339.66Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S3QF33_9STRA7.420e-2339.66Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S2UXM2_9STRA5.340e-2231.01Hypothetical protein (Fragment) n=2 Tax=Fibrocapsa... [more]
K8YPY8_NANGC3.370e-2132.70DAO domain-containing protein n=3 Tax=Monodopsidac... [more]
A0A7R9XSU7_9CHLO3.500e-2134.62Hypothetical protein n=1 Tax=Ostreococcus sp. 'luc... [more]
A0A7S0JJZ7_9EUKA4.150e-2133.33Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7328contigEcto-sp13_S_contig7328:4994..7508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score438.3
Seed ortholog evalue3.3e-120
Seed eggNOG ortholog2880.D7FNS1
Model size1141
Hectar predicted targeting categorychloroplast
Exons3
EggNOG free text desc.FAD dependent oxidoreductase
EggNOG OGs2QQBA@2759,COG0665@1
Ec32 ortholog descriptionFAD dependent oxidoreductase
Ec32 orthologEc-01_004480.1
Cds size1074
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464001.4098508-CDS-Ecto-sp13_S_contig7328:4993..53491681464001.4098508-CDS-Ecto-sp13_S_contig7328:4993..5349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7328 4994..5349 -
1681464001.42079-CDS-Ecto-sp13_S_contig7328:5989..62211681464001.42079-CDS-Ecto-sp13_S_contig7328:5989..6221Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7328 5990..6221 -
1681464001.4359665-CDS-Ecto-sp13_S_contig7328:6957..74431681464001.4359665-CDS-Ecto-sp13_S_contig7328:6957..7443Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7328 6958..7443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464001.4478598-UTR-Ecto-sp13_S_contig7328:7443..75081681464001.4478598-UTR-Ecto-sp13_S_contig7328:7443..7508Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7328 7444..7508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7328.18496.1prot_Ecto-sp13_S_contig7328.18496.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7328 4994..7443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7328.18496.1

>prot_Ecto-sp13_S_contig7328.18496.1 ID=prot_Ecto-sp13_S_contig7328.18496.1|Name=mRNA_Ecto-sp13_S_contig7328.18496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=358bp
MKGRRVPIRGIVPLVLCASAAARMPLAGKMAFANQAMFSSCCSRKGRATV
RGSSSSSSSVLYFSSSSAVAADEDLDAAVKAAVGALPSRPRVAVVGGGFA
GLAAAYHLAAFGSDVTVFDPHEAGTGSGASSVAAGLLHPLTPRGKLIWKG
EEGFEAAKHLIQTVNDKLVDDAAAAGDDAAQANGPRGCLTTDNVYRPLMD
EKQVDLFTKAAEDLPQWVESLTREEIMKAVPGSTPECLGGVRIRGALAVD
APTYLKGLWSACRALVNAADADSNASGDSGGGDDGASSSPSRKEGATWVR
QSVEDVHALAASGEFNAVVACVGAGVRALAGVKDIVSLRLVRGQALLYDN
VGAARAAE
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mRNA from alignment at Ecto-sp13_S_contig7328:4994..7508-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7328.18496.1 ID=mRNA_Ecto-sp13_S_contig7328.18496.1|Name=mRNA_Ecto-sp13_S_contig7328.18496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2515bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7328:4994..7508- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAACGCCGCCGTTAGAGTACACAGCAGCAGTAGATATCTACTGTCAGAG GAATAGTTGGGACCGATGAAGGGACGGCGAGTTCCCATCCGAGGCATAGT ACCGCTTGTACTCTGCGCAAGCGCAGCTGCCAGGATGCCTCTGGCGGGGA AAATGGCCTTCGCAAATCAAGCTATGTTCTCCTCCTGCTGCAGCAGGAAA GGACGGGCGACAGTAAGAGGGAGTAGCAGCAGCAGCAGCAGCGTCTTGTA TTTTTCCTCTTCATCCGCTGTTGCCGCCGACGAGGACCTCGACGCGGCTG TCAAAGCTGCTGTTGGCGCCCTCCCCAGTAGACCACGAGTTGCTGTTGTC GGGGGTGGCTTCGCGGGTCTGGCTGCTGCTTACCACTTGGCCGCGTTCGG GTCGGACGTGACTGTCTTCGACCCCCACGAGGCCGGCACTGGCAGCGGCG CGAGCTCCGTGGCTGCCGGCCTGCTGCACCCGTTGACGCCGCGAGGGAAG CTCATCTGGAAGGGAGAGGAGGGCTTCGAGGCTGCCAAGCATCTCATTCA AGTACGTGCAAACCGCGATCATGTTTCATGAGTCACGCCGTTGGCCGTGA ATCTTGCCGTTTGTCTAGTCAGTCCAGTGCTGTCGGCTTTCCCTTGCTGC ACACGACAACAAGGACGAGAGCCTCGAGGGTTGCGTGTGTCTCAAATGCA ACTTCTCGCGACGTGACGTGTGTTGCGGCGGTGTATCTTGGTTTCAACAC AATTTGACTTCAAACCTTCGCTGTTTCGTCCGGGAGTTTTTTTTTTTTCA AGCACCACCAAAACGGATAGGAAATCCAGCGCTACACGCTACTGCTGCTG TCCCGCATGTGGTTTCGTTGTACCGAGAATTTCACGAATTAATCGCATCG GACCTACGTGAGCATTCGCAAGGGCGAGGCATTATGCAGCACATGCAGTT TTACGGAGGAGCACAGTAATCTTACCTCATGCCTACCGACAGAGAGCTGT GTTGGAATTTTGGATCTTCGGATTTTCTCTGACCGACATTGTTTGACATC GCAAGAATGCATAGTGTCCTCCATGGTCTGACTTTGACCGGGGAGGTCGA GGTCCACTGCAGGCCGTGGGCAATGTGGCGCACGGATGCTTCGCAGGCGG CATGGTAACATTTTCTGTGATTTTGACGACGTGATGAACGTGGCGTAAGT TTTGCCCCATTATACACATGTATATTCATAACAACGTACATGAACGCCGA CATCTTCCTGATGCCCCCCCTCCCCCTCCTTCAACAGACTGTTAACGATA AGCTTGTCGATGACGCTGCCGCCGCCGGAGACGACGCGGCTCAAGCCAAC GGGCCGCGGGGGTGCTTGACAACAGACAACGTCTACCGGCCGCTGATGGA CGAGAAGCAGGTCGACCTCTTTACCAAGGCCGCGGAGGACTTGCCGCAGT GGGTGGAGTCGCTAACGCGAGAGGAGATAATGAAGGCCGTCCCGGGTTCG ACGCCCGAGTGTCTGGGGGGTGAGTCAAACCAAGCGAGGGCCGGGGAAAC ACGTTATGACATGTTTTTATTGCGACCAACCGGTCGTTGCTGTCAACGTG TCGAGCAGACGTTCAACGTGTCCTTTTCGTCGGCGACGAGAGGGGTTTGG TGCCCGGTCCGAGAGAGGATTGGTTCAGGTTGTACGGTTCCAGGTTCCAC CGCTGGGGTAACGAACCGCTGAGCGCTGCCTAGGAGGTCGTTGGGGCCGG TTTGTATAGAACCGTCGAGAGACTTGACACAAGATACTGCTGCTCGAAAC GTTTTGGAAAGAAGCGAGCGTCTCCCCGTCAACACTGGACCCTTCCGATA AGTCAAACTGCCGGTGTGGTTGGTGAGCTGAGCTCAGAAAACCATCGAAC TGGGCTCGACGGCTTCTTATCTTGCAGCGATTTGTGTGAACCGAATTTAT GTTTGCGAGAAAATCACCACAATGTTTCCCTTGCATTCTATCGTCGTGCC AGCAACCCCATCGCTTCTCCCCCCAAGCCAAATCAGTTAGTTTACAGCAG CCCCAGCAGCCACTTCTCTTGACTTCGCACGACACCCTCGTGTCCATTTC CCTCTCAACGTTCTTACTTCTCGCCATACGCCTCGGTCTTTGGTCCTCCG GGTCGTCAGGAGTTCGCATACGGGGCGCGTTAGCGGTCGACGCGCCGACG TACCTCAAGGGTCTCTGGTCTGCCTGCCGCGCGCTCGTCAACGCAGCAGA CGCGGACAGCAACGCTAGCGGTGACAGCGGCGGGGGCGATGACGGTGCCT CCTCGTCGCCGTCGCGGAAAGAGGGGGCTACGTGGGTACGGCAAAGCGTG GAGGACGTCCACGCGCTGGCCGCCTCGGGGGAGTTCAACGCCGTGGTGGC GTGCGTCGGGGCCGGAGTGAGAGCGCTCGCCGGGGTGAAGGACATCGTCA GCCTCCGGCTGGTGCGCGGACAGGCCCTGCTCTACGACAACGTGGGGGCG GCGAGGGCGGCGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7328:4994..7508-

>mRNA_Ecto-sp13_S_contig7328.18496.1 ID=mRNA_Ecto-sp13_S_contig7328.18496.1|Name=mRNA_Ecto-sp13_S_contig7328.18496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1074bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7328:4994..7508- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGGACGGCGAGTTCCCATCCGAGGCATAGTACCGCTTGTACTCTG
CGCAAGCGCAGCTGCCAGGATGCCTCTGGCGGGGAAAATGGCCTTCGCAA
ATCAAGCTATGTTCTCCTCCTGCTGCAGCAGGAAAGGACGGGCGACAGTA
AGAGGGAGTAGCAGCAGCAGCAGCAGCGTCTTGTATTTTTCCTCTTCATC
CGCTGTTGCCGCCGACGAGGACCTCGACGCGGCTGTCAAAGCTGCTGTTG
GCGCCCTCCCCAGTAGACCACGAGTTGCTGTTGTCGGGGGTGGCTTCGCG
GGTCTGGCTGCTGCTTACCACTTGGCCGCGTTCGGGTCGGACGTGACTGT
CTTCGACCCCCACGAGGCCGGCACTGGCAGCGGCGCGAGCTCCGTGGCTG
CCGGCCTGCTGCACCCGTTGACGCCGCGAGGGAAGCTCATCTGGAAGGGA
GAGGAGGGCTTCGAGGCTGCCAAGCATCTCATTCAAACTGTTAACGATAA
GCTTGTCGATGACGCTGCCGCCGCCGGAGACGACGCGGCTCAAGCCAACG
GGCCGCGGGGGTGCTTGACAACAGACAACGTCTACCGGCCGCTGATGGAC
GAGAAGCAGGTCGACCTCTTTACCAAGGCCGCGGAGGACTTGCCGCAGTG
GGTGGAGTCGCTAACGCGAGAGGAGATAATGAAGGCCGTCCCGGGTTCGA
CGCCCGAGTGTCTGGGGGGAGTTCGCATACGGGGCGCGTTAGCGGTCGAC
GCGCCGACGTACCTCAAGGGTCTCTGGTCTGCCTGCCGCGCGCTCGTCAA
CGCAGCAGACGCGGACAGCAACGCTAGCGGTGACAGCGGCGGGGGCGATG
ACGGTGCCTCCTCGTCGCCGTCGCGGAAAGAGGGGGCTACGTGGGTACGG
CAAAGCGTGGAGGACGTCCACGCGCTGGCCGCCTCGGGGGAGTTCAACGC
CGTGGTGGCGTGCGTCGGGGCCGGAGTGAGAGCGCTCGCCGGGGTGAAGG
ACATCGTCAGCCTCCGGCTGGTGCGCGGACAGGCCCTGCTCTACGACAAC
GTGGGGGCGGCGAGGGCGGCGGAG
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