mRNA_Ecto-sp13_S_contig7325.18491.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7325.18491.1
Unique NamemRNA_Ecto-sp13_S_contig7325.18491.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7325.18491.1 vs. uniprot
Match: D8LRZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ9_ECTSI)

HSP 1 Score: 273 bits (697), Expect = 1.390e-90
Identity = 144/158 (91.14%), Postives = 149/158 (94.30%), Query Frame = 1 
Query:    1 MAAPSNTVPVPPPTNNEVSFFAYLREVLSGAATLSEEVPVAVASEAAHLVKEFPVVGIVCKTFLAFEKLAETARSNQDDLATLRELCCVVVTGVLDKRSDRLGLSKGFVALEKHVNKAEEVAQRCNNGGRLKRQVLARRICEDIVSVMNDVVEFCAAN 474
            MAAPSNTVPVP   N+EVSFFAYLREVLSGAAT SEEVPVAVA EAAHLV+EFPVVGIVCKTFLAFE+LAETARSN+DDLATLRELCCVVVT VLDKRSDR GLSKGF ALEKHVNKAEEVAQ CN+GGRLKRQVLARRICEDIVSVMNDVVEFCAAN
Sbjct:    1 MAAPSNTVPVPSQINSEVSFFAYLREVLSGAATSSEEVPVAVALEAAHLVEEFPVVGIVCKTFLAFEQLAETARSNKDDLATLRELCCVVVTEVLDKRSDRSGLSKGFEALEKHVNKAEEVAQLCNSGGRLKRQVLARRICEDIVSVMNDVVEFCAAN 158
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BLAST of mRNA_Ecto-sp13_S_contig7325.18491.1 vs. uniprot
Match: A0A6H5KQS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS9_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 7.860e-84
Identity = 134/158 (84.81%), Postives = 142/158 (89.87%), Query Frame = 1 
Query:    1 MAAPSNTVPVPPPTNNEVSFFAYLREVLSGAATLSEEVPVAVASEAAHLVKEFPVVGIVCKTFLAFEKLAETARSNQDDLATLRELCCVVVTGVLDKRSDRLGLSKGFVALEKHVNKAEEVAQRCNNGGRLKRQVLARRICEDIVSVMNDVVEFCAAN 474
            MAAPSNTV VP PTNNE SFF YLREVL GAAT SEEVP A ASEAAHL++EFPVVG VCKTFLAFE+L ETARSN+DDLATLRELCCVVV GVLDKRSDR GLSK F ALEKHVNKAEEVAQ CN+ GR+KR+VLARRICEDIVSVMN+VVEFCAAN
Sbjct:    1 MAAPSNTVRVPSPTNNEASFFTYLREVLLGAATFSEEVPAANASEAAHLLEEFPVVGTVCKTFLAFEQLVETARSNKDDLATLRELCCVVVAGVLDKRSDRSGLSKRFEALEKHVNKAEEVAQLCNSSGRVKRKVLARRICEDIVSVMNNVVEFCAAN 158
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BLAST of mRNA_Ecto-sp13_S_contig7325.18491.1 vs. uniprot
Match: D7G0G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G6_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.360e-27
Identity = 72/165 (43.64%), Postives = 102/165 (61.82%), Query Frame = 1 
Query:    1 MAAPSNTVP--------VPPPTNNEVSFFAYLREVLSGAATLSEEVPVAVASEAAHLVKEFPVVGIVCKTFLAFEKLAETARSNQDDLATLRELCCVVVTGVLDKRSDRLGLSK-GFVALEKHVNKAEEVAQRCNNGGRLKRQVLARRICEDIVSVMNDVVEFCA 468
            MAAPS+T           P P+   V    Y++EV++GAA L +E+P  V           P++G VCKTFLAFE+LAETA+SN++ L+ L++LC  VV GVLD R +R  + K GF  L++ V+KA EVA+ CN G  ++R + AR+I  DI  +  DV+ +CA
Sbjct:    1 MAAPSSTATPAXXXXXXXPSPSKAIVDALVYVQEVVAGAAMLLQEMPAEVV----------PILGTVCKTFLAFEQLAETAKSNREALSMLQDLCKSVVNGVLDSRKERPSILKEGFAQLQEQVDKAVEVAKLCN-GSCMRRLLWARKIRNDIAGIRADVLAYCA 154
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7325.18491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LRZ9_ECTSI1.390e-9091.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQS9_9PHAE7.860e-8484.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0G6_ECTSI1.360e-2743.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7325contigEcto-sp13_S_contig7325:7101..7574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size474
Hectar predicted targeting categoryother localisation
Exons1
Cds size474
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464001.1117206-CDS-Ecto-sp13_S_contig7325:7100..75741681464001.1117206-CDS-Ecto-sp13_S_contig7325:7100..7574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7325 7101..7574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7325.18491.1prot_Ecto-sp13_S_contig7325.18491.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7325 7101..7574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7325.18491.1

>prot_Ecto-sp13_S_contig7325.18491.1 ID=prot_Ecto-sp13_S_contig7325.18491.1|Name=mRNA_Ecto-sp13_S_contig7325.18491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=158bp
MAAPSNTVPVPPPTNNEVSFFAYLREVLSGAATLSEEVPVAVASEAAHLV
KEFPVVGIVCKTFLAFEKLAETARSNQDDLATLRELCCVVVTGVLDKRSD
RLGLSKGFVALEKHVNKAEEVAQRCNNGGRLKRQVLARRICEDIVSVMND
VVEFCAAN
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mRNA from alignment at Ecto-sp13_S_contig7325:7101..7574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7325.18491.1 ID=mRNA_Ecto-sp13_S_contig7325.18491.1|Name=mRNA_Ecto-sp13_S_contig7325.18491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7325:7101..7574+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCACCCTCGAACACCGTACCTGTGCCTCCTCCAACCAACAATGA
GGTCAGCTTCTTTGCGTACCTCCGAGAGGTCTTATCGGGGGCGGCCACGT
TGTCGGAGGAGGTGCCTGTAGCCGTTGCGTCGGAAGCGGCCCACCTGGTG
AAGGAATTCCCCGTTGTCGGAATCGTGTGCAAGACCTTCCTGGCCTTCGA
GAAGCTTGCGGAAACGGCCAGGAGCAACCAGGACGACCTCGCCACTCTCC
GCGAGTTGTGCTGCGTGGTAGTCACAGGGGTCCTGGACAAACGCTCGGAC
CGCTTGGGGCTGTCCAAGGGTTTTGTGGCGCTCGAAAAACACGTGAATAA
AGCGGAGGAGGTCGCTCAGCGCTGCAACAACGGCGGACGCCTGAAACGGC
AAGTCTTGGCTCGCAGGATCTGCGAGGACATCGTCTCTGTCATGAATGAC
GTCGTGGAATTCTGCGCGGCAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7325:7101..7574+

>mRNA_Ecto-sp13_S_contig7325.18491.1 ID=mRNA_Ecto-sp13_S_contig7325.18491.1|Name=mRNA_Ecto-sp13_S_contig7325.18491.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=474bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7325:7101..7574+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCACCCTCGAACACCGTACCTGTGCCTCCTCCAACCAACAATGA
GGTCAGCTTCTTTGCGTACCTCCGAGAGGTCTTATCGGGGGCGGCCACGT
TGTCGGAGGAGGTGCCTGTAGCCGTTGCGTCGGAAGCGGCCCACCTGGTG
AAGGAATTCCCCGTTGTCGGAATCGTGTGCAAGACCTTCCTGGCCTTCGA
GAAGCTTGCGGAAACGGCCAGGAGCAACCAGGACGACCTCGCCACTCTCC
GCGAGTTGTGCTGCGTGGTAGTCACAGGGGTCCTGGACAAACGCTCGGAC
CGCTTGGGGCTGTCCAAGGGTTTTGTGGCGCTCGAAAAACACGTGAATAA
AGCGGAGGAGGTCGCTCAGCGCTGCAACAACGGCGGACGCCTGAAACGGC
AAGTCTTGGCTCGCAGGATCTGCGAGGACATCGTCTCTGTCATGAATGAC
GTCGTGGAATTCTGCGCGGCAAAC
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