mRNA_Ecto-sp13_S_contig7325.18490.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7325.18490.1
Unique NamemRNA_Ecto-sp13_S_contig7325.18490.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7325.18490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7325contigEcto-sp13_S_contig7325:1821..2779 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size959
Hectar predicted targeting categoryother localisation
Exons1
Cds size513
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464001.0408616-UTR-Ecto-sp13_S_contig7325:1820..18311681464001.0408616-UTR-Ecto-sp13_S_contig7325:1820..1831Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7325 1821..1831 +
1681464001.072146-UTR-Ecto-sp13_S_contig7325:2344..27791681464001.072146-UTR-Ecto-sp13_S_contig7325:2344..2779Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7325 2345..2779 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464001.0597112-CDS-Ecto-sp13_S_contig7325:1831..23441681464001.0597112-CDS-Ecto-sp13_S_contig7325:1831..2344Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7325 1832..2344 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7325.18490.1prot_Ecto-sp13_S_contig7325.18490.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7325 1832..2344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7325.18490.1

>prot_Ecto-sp13_S_contig7325.18490.1 ID=prot_Ecto-sp13_S_contig7325.18490.1|Name=mRNA_Ecto-sp13_S_contig7325.18490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MAKIGRDFPRRSVVTVCVKQLDCEQARRIGRQRKEFPSTAHLGGVHTKRG
CPAEASRRASLRQKVAEKISAKLAKGTIEQEETQLKGLPFSKVETMDAVA
RKWENFFPEERIGPPNGAGHAWDVPESLVILIVKKLLSFFYRWVGDVAAA
AVISCWGTKPRYVRVTSNED*
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mRNA from alignment at Ecto-sp13_S_contig7325:1821..2779+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7325.18490.1 ID=mRNA_Ecto-sp13_S_contig7325.18490.1|Name=mRNA_Ecto-sp13_S_contig7325.18490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=959bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7325:1821..2779+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAACGCGTCAATGGCCAAAATTGGCAGAGACTTCCCACGTCGCTCTGTG
GTGACGGTGTGCGTCAAACAGCTCGATTGCGAGCAAGCACGAAGAATAGG
TCGCCAAAGGAAGGAATTTCCGAGCACAGCGCACCTCGGAGGGGTGCACA
CAAAACGTGGTTGTCCAGCGGAAGCCTCTCGTCGTGCAAGTCTTCGACAG
AAAGTGGCCGAGAAAATTTCTGCGAAGTTGGCGAAAGGAACGATCGAACA
AGAGGAGACCCAACTGAAGGGGTTGCCCTTTTCGAAGGTGGAAACCATGG
ATGCGGTTGCTAGAAAATGGGAAAACTTTTTTCCCGAAGAAAGGATAGGG
CCCCCGAACGGTGCAGGACATGCGTGGGATGTTCCTGAGTCCCTGGTGAT
ATTGATTGTAAAGAAATTGCTGAGCTTCTTCTACCGATGGGTCGGAGACG
TGGCAGCAGCAGCCGTTATAAGTTGTTGGGGTACAAAACCCCGTTATGTG
CGGGTCACGTCCAATGAGGACTAACACGCGAACGTTTGTGGATACGGAAA
GGAGCCTGGACCAAGTTCGGCGGAATAGGGTGGCATGGCCGTCGTGTCTT
TAGTGCTAGCGCTGGGTGATTTGAACACTTTTGCGAGACCAGAAGTAGTC
AATACTGTGTTCTGCGGAAGGAACGTGGTCCCGACGAAGGGTTGACCCGA
AGGGTCGACAAACAGAACGCCCCGAGACCAACTCCGGGAAAGGGGGAAAT
CTCTGCCAGTCATGAAATGTACACCGCTGGAGGGAGGGTAGTATCACAGT
TCCCGCGGGTTGAGCGAAAATAACATGTCCGGCGCGAAAAACCACAGTAA
TGAACGTGGGCGGACCAAGGTAAACGTACTTTTCGCGCCTCGTGTTCTAT
CGAAATCAATCCGGTTGGTGTTACAACGTTATTGTTGGTTGTGGTACTGT
ACGTTTCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7325:1821..2779+

>mRNA_Ecto-sp13_S_contig7325.18490.1 ID=mRNA_Ecto-sp13_S_contig7325.18490.1|Name=mRNA_Ecto-sp13_S_contig7325.18490.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7325:1821..2779+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAAAATTGGCAGAGACTTCCCACGTCGCTCTGTGGTGACGGTGTG
CGTCAAACAGCTCGATTGCGAGCAAGCACGAAGAATAGGTCGCCAAAGGA
AGGAATTTCCGAGCACAGCGCACCTCGGAGGGGTGCACACAAAACGTGGT
TGTCCAGCGGAAGCCTCTCGTCGTGCAAGTCTTCGACAGAAAGTGGCCGA
GAAAATTTCTGCGAAGTTGGCGAAAGGAACGATCGAACAAGAGGAGACCC
AACTGAAGGGGTTGCCCTTTTCGAAGGTGGAAACCATGGATGCGGTTGCT
AGAAAATGGGAAAACTTTTTTCCCGAAGAAAGGATAGGGCCCCCGAACGG
TGCAGGACATGCGTGGGATGTTCCTGAGTCCCTGGTGATATTGATTGTAA
AGAAATTGCTGAGCTTCTTCTACCGATGGGTCGGAGACGTGGCAGCAGCA
GCCGTTATAAGTTGTTGGGGTACAAAACCCCGTTATGTGCGGGTCACGTC
CAATGAGGACTAA
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