mRNA_Ecto-sp13_S_contig7324.18489.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7324.18489.1
Unique NamemRNA_Ecto-sp13_S_contig7324.18489.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7324.18489.1 vs. uniprot
Match: A0A6P8Y9Z8_THRPL (ATP-dependent DNA helicase n=1 Tax=Thrips palmi TaxID=161013 RepID=A0A6P8Y9Z8_THRPL)

HSP 1 Score: 52.8 bits (125), Expect = 4.200e-6
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:    4 FCHGQLYVAVSRTSSRNNIVCLVQPERMINGVPHVHNVVYPEFI 135
            F HGQLYVA+SR  SR NI  LV P R+++G  H  NVVY + +
Sbjct: 1262 FTHGQLYVALSRVRSRENIKLLVPPARVLHGTVHTKNVVYRDLL 1305
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BLAST of mRNA_Ecto-sp13_S_contig7324.18489.1 vs. uniprot
Match: A0A2G3AQD7_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQD7_CAPCH)

HSP 1 Score: 51.2 bits (121), Expect = 1.430e-5
Identity = 23/41 (56.10%), Postives = 28/41 (68.29%), Query Frame = 1 
Query:    1 VFCHGQLYVAVSRTSSRNNIVCLVQPERMINGVPHVHNVVY 123
            VF HGQLYVA+ R     ++  LV  +R+IN VPH HNVVY
Sbjct:  573 VFSHGQLYVALGRVRKSCDLKVLVPQQRVINNVPHTHNVVY 613
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BLAST of mRNA_Ecto-sp13_S_contig7324.18489.1 vs. uniprot
Match: A0A3L6EUR4_MAIZE (Herpes_Helicase domain-containing protein n=3 Tax=Zea mays TaxID=4577 RepID=A0A3L6EUR4_MAIZE)

HSP 1 Score: 47.4 bits (111), Expect = 3.010e-5
Identity = 26/48 (54.17%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:    1 VFCHGQLYVAVSRTSSRNNIVCLVQPERMINGVPHVHNVVYPEFIQAA 144
            VF HGQLYVAVSR++SRN +V L++ E    G     NVVY E + AA
Sbjct:   22 VFTHGQLYVAVSRSTSRNGLVILIENEDGSCG-SQTRNVVYKEVLAAA 68
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BLAST of mRNA_Ecto-sp13_S_contig7324.18489.1 vs. uniprot
Match: UPI001ED86662 (uncharacterized protein LOC124170398 n=2 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED86662)

HSP 1 Score: 49.7 bits (117), Expect = 5.110e-5
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 FCHGQLYVAVSRTSSRNNIVCLVQPERMINGVPHVHNVVYPEFI 135
            F HG LYV +SR     +I+ LV P+++I+G+P+  NVV+PE +
Sbjct: 1041 FTHGLLYVLLSRVRRPEDIIVLVPPKKLIDGIPYAKNVVFPELL 1084
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BLAST of mRNA_Ecto-sp13_S_contig7324.18489.1 vs. uniprot
Match: UPI001ED879E3 (uncharacterized protein LOC124170030 n=6 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED879E3)

HSP 1 Score: 49.7 bits (117), Expect = 5.170e-5
Identity = 20/44 (45.45%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 FCHGQLYVAVSRTSSRNNIVCLVQPERMINGVPHVHNVVYPEFI 135
            F HG LYV +SR     +I+ LV P+++I+G+P+  NVV+PE +
Sbjct: 1721 FTHGLLYVLLSRVRRPEDIIVLVPPKKLIDGIPYAKNVVFPELL 1764
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7324.18489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6P8Y9Z8_THRPL4.200e-654.55ATP-dependent DNA helicase n=1 Tax=Thrips palmi Ta... [more]
A0A2G3AQD7_CAPCH1.430e-556.10ATP-dependent DNA helicase n=1 Tax=Capsicum chinen... [more]
A0A3L6EUR4_MAIZE3.010e-554.17Herpes_Helicase domain-containing protein n=3 Tax=... [more]
UPI001ED866625.110e-545.45uncharacterized protein LOC124170398 n=2 Tax=Ischn... [more]
UPI001ED879E35.170e-545.45uncharacterized protein LOC124170030 n=6 Tax=Ischn... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7324contigEcto-sp13_S_contig7324:5332..5574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size243
Hectar predicted targeting categoryother localisation
Exons1
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464001.0101511-CDS-Ecto-sp13_S_contig7324:5331..55741681464001.0101511-CDS-Ecto-sp13_S_contig7324:5331..5574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7324 5332..5574 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7324.18489.1prot_Ecto-sp13_S_contig7324.18489.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7324 5332..5574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7324.18489.1

>prot_Ecto-sp13_S_contig7324.18489.1 ID=prot_Ecto-sp13_S_contig7324.18489.1|Name=mRNA_Ecto-sp13_S_contig7324.18489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
VFCHGQLYVAVSRTSSRNNIVCLVQPERMINGVPHVHNVVYPEFIQAATG
KRPACLDLISNPRPTDNKGSSNDPDPDPDKD
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mRNA from alignment at Ecto-sp13_S_contig7324:5332..5574-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7324.18489.1 ID=mRNA_Ecto-sp13_S_contig7324.18489.1|Name=mRNA_Ecto-sp13_S_contig7324.18489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7324:5332..5574- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTTTTGTCATGGCCAGCTCTATGTTGCAGTTAGTAGAACAAGCTCTCG
AAACAATATTGTTTGTCTCGTGCAGCCAGAGAGAATGATCAATGGCGTCC
CTCACGTGCATAACGTCGTTTATCCAGAATTTATTCAAGCGGCGACCGGT
AAACGACCTGCGTGTCTCGACCTCATCTCCAACCCCAGACCTACCGACAA
CAAAGGGAGCAGCAACGACCCCGACCCCGATCCAGACAAAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7324:5332..5574-

>mRNA_Ecto-sp13_S_contig7324.18489.1 ID=mRNA_Ecto-sp13_S_contig7324.18489.1|Name=mRNA_Ecto-sp13_S_contig7324.18489.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7324:5332..5574- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTTTTGTCATGGCCAGCTCTATGTTGCAGTTAGTAGAACAAGCTCTCG
AAACAATATTGTTTGTCTCGTGCAGCCAGAGAGAATGATCAATGGCGTCC
CTCACGTGCATAACGTCGTTTATCCAGAATTTATTCAAGCGGCGACCGGT
AAACGACCTGCGTGTCTCGACCTCATCTCCAACCCCAGACCTACCGACAA
CAAAGGGAGCAGCAACGACCCCGACCCCGATCCAGACAAAGAC
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