mRNA_Ecto-sp13_S_contig73196.18483.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig73196.18483.1
Unique NamemRNA_Ecto-sp13_S_contig73196.18483.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig73196.18483.1 vs. uniprot
Match: A0A6H5KAI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI6_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 4.280e-50
Identity = 82/84 (97.62%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    7 QAWEYRLPIYLGAAATAEFVADVFLCPLEATRIRLVSDPTYADGLVSAVPKILKQEGVIRGFYSGFAPILFKQIPYTMAKFAVQ 258
            +AWEYRLPIYLGAAATAEFVADVFLCPLEATRIRLVSDPTYADGLVSAVPKIL+QEGVIRGFYSGFAPILFKQIPYTMAKFAVQ
Sbjct:   54 KAWEYRLPIYLGAAATAEFVADVFLCPLEATRIRLVSDPTYADGLVSAVPKILRQEGVIRGFYSGFAPILFKQIPYTMAKFAVQ 137
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BLAST of mRNA_Ecto-sp13_S_contig73196.18483.1 vs. uniprot
Match: D7FKA9_ECTSI (Mitochondrial carrier family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKA9_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 3.000e-49
Identity = 81/84 (96.43%), Postives = 83/84 (98.81%), Query Frame = 1 
Query:    7 QAWEYRLPIYLGAAATAEFVADVFLCPLEATRIRLVSDPTYADGLVSAVPKILKQEGVIRGFYSGFAPILFKQIPYTMAKFAVQ 258
            +AWEYRLPIYLGAAA AEFVADVFLCPLEATRIRLVSDPTYADGLVSAVPKIL+QEGVIRGFYSGFAPILFKQIPYTMAKFAVQ
Sbjct:  106 KAWEYRLPIYLGAAAMAEFVADVFLCPLEATRIRLVSDPTYADGLVSAVPKILRQEGVIRGFYSGFAPILFKQIPYTMAKFAVQ 189
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BLAST of mRNA_Ecto-sp13_S_contig73196.18483.1 vs. uniprot
Match: A0A7S2TR27_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TR27_9EUKA)

HSP 1 Score: 142 bits (357), Expect = 7.360e-41
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = 1 
Query:    7 QAWEYRLPIYLGAAATAEFVADVFLCPLEATRIRLVSDPTYADGLVSAVPKILKQEGVIRGFYSGFAPILFKQIPYTMAKFAVQ 258
            +AWE R+PIYLGAAA AEF+AD+FLCPLEATRIRLVS+P YA GL+SA PKIL ++G+I+GFYSGF PIL KQIPYTMAKFAVQ
Sbjct:   90 KAWEMRIPIYLGAAACAEFIADIFLCPLEATRIRLVSNPEYASGLISAFPKILAEDGLIKGFYSGFGPILLKQIPYTMAKFAVQ 173
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BLAST of mRNA_Ecto-sp13_S_contig73196.18483.1 vs. uniprot
Match: A0A507DXA5_9FUNG (Uncharacterized protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DXA5_9FUNG)

HSP 1 Score: 144 bits (362), Expect = 2.630e-40
Identity = 67/83 (80.72%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:   10 AWEYRLPIYLGAAATAEFVADVFLCPLEATRIRLVSDPTYADGLVSAVPKILKQEGVIRGFYSGFAPILFKQIPYTMAKFAVQ 258
            AW  R+PIYLGAAA AEF+AD+FLCPLEATRIRLVS+P +A+GL+SA PKI+KQ+GVI+GFYSGF PILFKQIPYTMAKFAVQ
Sbjct:  105 AWNNRIPIYLGAAAGAEFIADIFLCPLEATRIRLVSNPQFANGLISAFPKIIKQDGVIKGFYSGFGPILFKQIPYTMAKFAVQ 187
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BLAST of mRNA_Ecto-sp13_S_contig73196.18483.1 vs. uniprot
Match: A0A7S3LS37_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LS37_9STRA)

HSP 1 Score: 143 bits (360), Expect = 7.560e-40
Identity = 66/84 (78.57%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:    7 QAWEYRLPIYLGAAATAEFVADVFLCPLEATRIRLVSDPTYADGLVSAVPKILKQEGVIRGFYSGFAPILFKQIPYTMAKFAVQ 258
            +AW+ R+PIYLGAAA AEF+AD+FLCPLEATRIRLV +P YA GL++A PKI+K +GVI+GFYSGFAPILFKQIPYTMAKFAVQ
Sbjct:  118 KAWDNRVPIYLGAAAMAEFIADIFLCPLEATRIRLVGNPEYASGLITAFPKIIKDDGVIKGFYSGFAPILFKQIPYTMAKFAVQ 201
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BLAST of mRNA_Ecto-sp13_S_contig73196.18483.1 vs. uniprot
Match: A0A0G4IXQ1_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IXQ1_PLABS)

HSP 1 Score: 142 bits (359), Expect = 8.700e-40
Identity = 67/84 (79.76%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    7 QAWEYRLPIYLGAAATAEFVADVFLCPLEATRIRLVSDPTYADGLVSAVPKILKQEGVIRGFYSGFAPILFKQIPYTMAKFAVQ 258
            ++W  R PIYLGAAA AEF+AD+FLCPLEATRIRLVS+P YA GL++A PKILK EGVI+GFYSGF PILFKQIPYTMAKFAVQ
Sbjct:  111 RSWNLRFPIYLGAAAAAEFIADIFLCPLEATRIRLVSNPKYASGLMTAFPKILKNEGVIKGFYSGFGPILFKQIPYTMAKFAVQ 194
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BLAST of mRNA_Ecto-sp13_S_contig73196.18483.1 vs. uniprot
Match: A0A7S2WF58_9STRA (Hypothetical protein n=2 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2WF58_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.720e-39
Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = 1 
Query:    7 QAWEYRLPIYLGAAATAEFVADVFLCPLEATRIRLVSDPTYADGLVSAVPKILKQEGVIRGFYSGFAPILFKQIPYTMAKFAVQ 258
            +AWEYR PIYL +AA AEF+ADVFLCPLEATRI+LVS+P YA GL+SA PKI+K EG IRGFYSGF PILFKQIPYTMAKFAVQ
Sbjct:  143 KAWEYRFPIYLLSAACAEFIADVFLCPLEATRIKLVSNPEYASGLISAFPKIIKDEGFIRGFYSGFIPILFKQIPYTMAKFAVQ 226
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BLAST of mRNA_Ecto-sp13_S_contig73196.18483.1 vs. uniprot
Match: A0A0H5R5F8_9EUKA (Uncharacterized protein n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5R5F8_9EUKA)

HSP 1 Score: 140 bits (354), Expect = 4.640e-39
Identity = 64/83 (77.11%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:   10 AWEYRLPIYLGAAATAEFVADVFLCPLEATRIRLVSDPTYADGLVSAVPKILKQEGVIRGFYSGFAPILFKQIPYTMAKFAVQ 258
            AW+YR PIYL +AA AEF+ADVFLCPLEATRIRLVS+P +A GL++A+PKI++++G+IRGFYSGF PILFKQIPYTMAKFAVQ
Sbjct:  112 AWKYRFPIYLASAAGAEFIADVFLCPLEATRIRLVSNPKFASGLITAMPKIIQKDGIIRGFYSGFGPILFKQIPYTMAKFAVQ 194
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BLAST of mRNA_Ecto-sp13_S_contig73196.18483.1 vs. uniprot
Match: A0A2R5GCY7_9STRA (Mitochondrial phosphate carrier protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCY7_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.400e-38
Identity = 64/84 (76.19%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    7 QAWEYRLPIYLGAAATAEFVADVFLCPLEATRIRLVSDPTYADGLVSAVPKILKQEGVIRGFYSGFAPILFKQIPYTMAKFAVQ 258
            +AWEYR PIYL +AA AEF+AD+FLCPLEATRI+LVS+P+YA GL+SA PKI+  EG I GFYSGF PILFKQ+PYTMAKFAVQ
Sbjct:  128 KAWEYRFPIYLSSAAAAEFIADIFLCPLEATRIKLVSNPSYASGLISAFPKIIADEGFISGFYSGFIPILFKQVPYTMAKFAVQ 211
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BLAST of mRNA_Ecto-sp13_S_contig73196.18483.1 vs. uniprot
Match: A0A507F3P1_9FUNG (Uncharacterized protein n=2 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507F3P1_9FUNG)

HSP 1 Score: 139 bits (350), Expect = 1.680e-38
Identity = 65/83 (78.31%), Postives = 75/83 (90.36%), Query Frame = 1 
Query:   10 AWEYRLPIYLGAAATAEFVADVFLCPLEATRIRLVSDPTYADGLVSAVPKILKQEGVIRGFYSGFAPILFKQIPYTMAKFAVQ 258
            AW  R+ IYLGAAA AEFVAD+FLCPLEATRIRLVS+P++A+GL  A PKI+KQ+G+I+GFYSGF PILFKQIPYTMAKFAVQ
Sbjct:  107 AWNNRVAIYLGAAAAAEFVADIFLCPLEATRIRLVSNPSFANGLADAFPKIIKQDGIIKGFYSGFGPILFKQIPYTMAKFAVQ 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig73196.18483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAI6_9PHAE4.280e-5097.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKA9_ECTSI3.000e-4996.43Mitochondrial carrier family n=1 Tax=Ectocarpus si... [more]
A0A7S2TR27_9EUKA7.360e-4178.57Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A507DXA5_9FUNG2.630e-4080.72Uncharacterized protein n=1 Tax=Powellomyces hirtu... [more]
A0A7S3LS37_9STRA7.560e-4078.57Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A0G4IXQ1_PLABS8.700e-4079.76Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A7S2WF58_9STRA1.720e-3980.95Hypothetical protein n=2 Tax=labyrinthulid quahog ... [more]
A0A0H5R5F8_9EUKA4.640e-3977.11Uncharacterized protein n=1 Tax=Spongospora subter... [more]
A0A2R5GCY7_9STRA1.400e-3876.19Mitochondrial phosphate carrier protein n=1 Tax=Ho... [more]
A0A507F3P1_9FUNG1.680e-3878.31Uncharacterized protein n=2 Tax=Chytriomyces confe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig73196contigEcto-sp13_S_contig73196:107..388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score168.7
Seed ortholog evalue1.3e-39
Seed eggNOG ortholog2880.D7FKA9
Preferred nameMIR1
Model size282
KEGG koko:K15102
KEGG TC2.A.29.4
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005315,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006817,GO:0006820,GO:0006839,GO:0008150,GO:0015291,GO:0015318,GO:0015698,GO:0016020,GO:0016021,GO:0019866,GO:0022804,GO:0022857,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031304,GO:0031305,GO:0031966,GO:0031967,GO:0031975,GO:0032592,GO:0034220,GO:0035435,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0098573,GO:0098656,GO:0098660,GO:0098661
Exons1
EggNOG free text desc.phosphate ion transmembrane transport
EggNOG OGsKOG0767@1,KOG0767@2759
Cds size282
COG Functional cat.U
BiGG ReactioniMM904.YJR077C,iND750.YJR077C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464000.075333-CDS-Ecto-sp13_S_contig73196:106..3881681464000.075333-CDS-Ecto-sp13_S_contig73196:106..388Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig73196 107..388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig73196.18483.1prot_Ecto-sp13_S_contig73196.18483.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig73196 107..388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig73196.18483.1

>prot_Ecto-sp13_S_contig73196.18483.1 ID=prot_Ecto-sp13_S_contig73196.18483.1|Name=mRNA_Ecto-sp13_S_contig73196.18483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=94bp
FTQAWEYRLPIYLGAAATAEFVADVFLCPLEATRIRLVSDPTYADGLVSA
VPKILKQEGVIRGFYSGFAPILFKQIPYTMAKFAVQVRVSAFFF
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mRNA from alignment at Ecto-sp13_S_contig73196:107..388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig73196.18483.1 ID=mRNA_Ecto-sp13_S_contig73196.18483.1|Name=mRNA_Ecto-sp13_S_contig73196.18483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73196:107..388+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCACGCAGGCGTGGGAGTACCGACTCCCCATTTACCTGGGAGCGGCCGC
GACGGCAGAGTTCGTTGCAGACGTGTTCCTTTGCCCCCTGGAGGCGACGC
GGATCAGGCTGGTGTCCGACCCCACCTACGCGGACGGGCTCGTGTCTGCT
GTGCCTAAGATCCTCAAGCAGGAGGGCGTCATCCGCGGCTTTTACTCGGG
GTTCGCGCCCATCCTGTTCAAGCAGATCCCTTACACGATGGCCAAATTCG
CAGTGCAGGTGCGTGTTTCTGCGTTTTTTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig73196:107..388+

>mRNA_Ecto-sp13_S_contig73196.18483.1 ID=mRNA_Ecto-sp13_S_contig73196.18483.1|Name=mRNA_Ecto-sp13_S_contig73196.18483.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig73196:107..388+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCACGCAGGCGTGGGAGTACCGACTCCCCATTTACCTGGGAGCGGCCGC
GACGGCAGAGTTCGTTGCAGACGTGTTCCTTTGCCCCCTGGAGGCGACGC
GGATCAGGCTGGTGTCCGACCCCACCTACGCGGACGGGCTCGTGTCTGCT
GTGCCTAAGATCCTCAAGCAGGAGGGCGTCATCCGCGGCTTTTACTCGGG
GTTCGCGCCCATCCTGTTCAAGCAGATCCCTTACACGATGGCCAAATTCG
CAGTGCAGGTGCGTGTTTCTGCGTTTTTTTTT
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