mRNA_Ecto-sp13_S_contig7314.18477.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7314.18477.1
Unique NamemRNA_Ecto-sp13_S_contig7314.18477.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7314.18477.1 vs. uniprot
Match: A0A6H5JTX4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTX4_9PHAE)

HSP 1 Score: 611 bits (1575), Expect = 1.170e-213
Identity = 318/361 (88.09%), Postives = 326/361 (90.30%), Query Frame = 1
Query:    1 RAQVPEQDPLLETTPPASIAHTAPLDGATKPNFRNSQGAAVGMRSRTPTRDSGPAGSAGGEGEAAAVAAERGGSQLGNAPLSPKTTAGGAGARGGRELSFWGFTKQLSSHGNFWLYVSMNFMENFNALFDQSFFVFLDTKLFERVVPRRPHGVLTALCLYAPK---------LMTQVLTPVADRYGTYKLIMGAALFKLVAGVLMFTCGRRAWPLWTLLFLGNRLAATAWGFYNLSFSDVIDEDTLRNKRPESMSVSVHGLQALFVKPAQSLAPMFGMAFLPAGALKTDLVDMTVRQAEGVQAAAFTLMWAVPAGCGLVQVLIWRAYRLHGAALKDMKMKLKEWERFLSYKRDDATGVGMA 1056
            R +VPEQDPLLE+TPPASI HTAPLDGATKPN RN+QGAAVGMRSRTPTRDSGPAGS          AA RG S +GNAPLSPKTTAGGAGARGGRELSFWGFTKQLSSHGNFWLYV  +   NFNALFDQSFFVFLDTKLFE VVPR PHGVLTALCLYAPK         LMTQVLTPVADRYGTYKLIMGAALFKLVAGVLMF CGR+AWP+WTLLFLGNRLAATAWGFYNLSFSDVIDEDTLRNKRPESMSVSVHGLQALFVKPAQSLAPM GMAFLPAGALKTDLVDMT+RQAEGVQAAAFTLMWAVPAGCGLVQVLIWRAYRLHGAALKDMKMKLKEWERFLSYK DDATGVGMA
Sbjct:  216 RREVPEQDPLLESTPPASITHTAPLDGATKPNSRNNQGAAVGMRSRTPTRDSGPAGSXXXXXXXXXXAAGRGVSLMGNAPLSPKTTAGGAGARGGRELSFWGFTKQLSSHGNFWLYVPSS---NFNALFDQSFFVFLDTKLFEMVVPRGPHGVLTALCLYAPKVRNTALTRILMTQVLTPVADRYGTYKLIMGAALFKLVAGVLMFACGRQAWPMWTLLFLGNRLAATAWGFYNLSFSDVIDEDTLRNKRPESMSVSVHGLQALFVKPAQSLAPMVGMAFLPAGALKTDLVDMTMRQAEGVQAAAFTLMWAVPAGCGLVQVLIWRAYRLHGAALKDMKMKLKEWERFLSYKSDDATGVGMA 573          
BLAST of mRNA_Ecto-sp13_S_contig7314.18477.1 vs. uniprot
Match: UPI0001CBA663 (transmembrane protein 180-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBA663)

HSP 1 Score: 115 bits (288), Expect = 3.740e-24
Identity = 75/236 (31.78%), Postives = 121/236 (51.27%), Query Frame = 1
Query:  289 ELSFWGFTKQLSSHGNFWLYVSMNFMENFNALFDQSFF-VFLDTKLFERVVPRRPHGVLTALCLYAPKLMTQVL-TPVADRYGTYKLIMGAALFKLVAGVLMFTCGR-RAWPLWTLLFLGNRLAATAWGFYNLSFSDVIDEDTLRNKRPESMSVSVHGLQALFVKPAQSLAPMFGMAFLPAGALKTDLVDMTVRQAEGVQAAAFTLMWAVPAGCGLVQVLIWRAYRLHGAALKDMK 987
            E S W  +KQ+ S  NF ++V MNF + F+  F  +F  +F D  + ++   R     L       PK++  +  + V +R+G+YK+I+ +   K++ G+LMF+ GR   W L     +   L   A+ F+ +  SD+ID+D  R KR   +S  + G  ALF KPAQS+APM  ++ L     ++ +    +     +  A F L+ AVP   G+ Q+L W  Y L  + L+  K
Sbjct:  235 ENSIWKLSKQIISEKNFLMFVIMNFCQVFHLAFGSNFLAIFGDALIPQKTCRRYFRKFLYGSSSMVPKVLIILFGSLVMERFGSYKVILISFYIKVITGILMFSLGRSHTWCLVIFFLMDRSLPYCAFSFFKMPLSDIIDDDAARFKRKSPLSSMMFGTNALFTKPAQSVAPMLVVSILNRHGYQSAISHGHMEDNSELLDAIFLLVCAVPTVLGVCQLLAWLQYTLRSSHLETPK 470          
BLAST of mRNA_Ecto-sp13_S_contig7314.18477.1 vs. uniprot
Match: A0A369SLA8_9METZ (Transmembrane protein 180 n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369SLA8_9METZ)

HSP 1 Score: 113 bits (282), Expect = 2.100e-23
Identity = 68/234 (29.06%), Postives = 124/234 (52.99%), Query Frame = 1
Query:  289 ELSFWGFTKQLSSHGNFWLYVSMNFMENFNALFDQSFF-VFLDTKLFERVVPRRPHGVLTALCLYAPKLMTQVLTPVADRYGTYKLIMGAALFKLVAGVLMFTCGRRAWPLWTLLF--LGNRLAATAWGFYNLSFSDVIDEDTLRNKRPESMSVSVHGLQALFVKPAQSLAPMFGMAFLPAGALKTDLVDMTVRQAEGVQAAAFTLMWAVPAGCGLVQVLIWRAYRLHGAALKD 981
            +++ +   KQ++++  F L+V MNF++ F+     +FF +F D  +   ++P+    ++       P+++  + +P+  R+G+Y+ IM +   K    + MF  G     ++ + F  L   L    +  +NLS SD+ID+D  + KR   +S  + G  ALF KPAQSLAPMF ++FL     +     +T+     ++ A F+++  VP    ++Q+LIW  Y L G  +K+
Sbjct:  225 DITLYTLFKQITTNKQFALFVLMNFLQIFHNTIGSNFFSIFADNLIGSSLLPQA-RSIMAGSAFVLPQILVLLFSPLLARFGSYRCIMVSFFVKFALALAMFLSGPSN-MIFLIFFMVLDRSLPEATFSLFNLSVSDIIDDDRAKYKRRAPISSMIFGTNALFTKPAQSLAPMFVVSFLTGYGYQHGSQAVTIPAKPELRQAMFSMICLVPIVASVIQILIWSFYSLRGQRVKN 456          
BLAST of mRNA_Ecto-sp13_S_contig7314.18477.1 vs. uniprot
Match: A0A6P8IHK0_ACTTE (transmembrane protein 180-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IHK0_ACTTE)

HSP 1 Score: 110 bits (275), Expect = 1.830e-22
Identity = 70/225 (31.11%), Postives = 112/225 (49.78%), Query Frame = 1
Query:  301 WGFTKQLSSHGNFWLYVSMNFMENFNALFDQSFF-VFLDTKLFERVVPRRPHGVLTALCLYAPKLMTQVLTPVADRYGTYKLIMGAALFKLVAGVLMFTCGRR-AWPLWTLLFLGNRLAATAWGFYNLSFSDVIDEDTLRNKRPESMSVSVHGLQALFVKPAQSLAPMFGMAFLPAGALKTDLVDMTVRQAE---GVQAAAFTLMWAVPAGCGLVQVLIWRAYRL 960
            W   KQL S  N   +V+MNF + F++ F  +FF +F +  +   V+P      +       P+++  VL+ +  +YG+Y LI+ +   KL    L++  GR+  W L  + F    L A +   +NLS +D++D D  + +R   +S  + G  ALF KPAQSLAPM  +  L     +      T+R +     +Q   F LM  VP     +Q+++WR Y L
Sbjct:  228 WTLLKQLISQKNLVFFVTMNFFQVFHSTFQSNFFLIFAEYLIGPDVLPAFGLSFIAGSSYVVPQIIVLVLSTLLSKYGSYYLILWSMYIKLTMATLVYIFGRQYIWLLAFMFFADRSLQAASTSLFNLSLADIVDSDXEKYRRRSPVSSMIFGTNALFTKPAQSLAPMLVVFILNRYGYQKKGSQKTLRSSGEYVALQDVMFQLMCLVPMFIAFIQIIVWRWYTL 452          
BLAST of mRNA_Ecto-sp13_S_contig7314.18477.1 vs. uniprot
Match: A0A3M6TDC0_POCDA (Uncharacterized protein n=2 Tax=Pocillopora damicornis TaxID=46731 RepID=A0A3M6TDC0_POCDA)

HSP 1 Score: 109 bits (272), Expect = 3.080e-22
Identity = 71/227 (31.28%), Postives = 116/227 (51.10%), Query Frame = 1
Query:  292 LSFWGFTKQLSSHGNFWLYVSMNFMENFNALFDQSFF-VFLDTKLFERVVPRRPHGVLTALCLYAPKLMTQVLTPVADRYGTYKLIMGAALFKLVAGVLMFTCGR-RAWPLWTLLFLGNRLAATAWGFYNLSFSDVIDEDTLRNKRPESMSVSVHGLQALFVKPAQSLAPMFGMAFLPAGALKTDLVDMTVRQAEGVQA--AAFTLMWAVPAGCGLVQVLIWRAYRL 960
            L  +   KQ+ +  +F  +V+MNF + F+  F  +FF +F +  +   V+P   + +LT      P+L+  + +P+  ++G+YK+I+ +   KL   V++F  GR   W L+  L + N L    +  +NLS SD+ID D  + +R   +S  + G  ALF KPAQSLAPM  +  L     K    +  V      Q   A F L+  +P    +VQ+++W  Y L
Sbjct:  189 LPLFTLLKQILTQRSFVCFVAMNFFQVFHVTFCSNFFLIFAEHLIGPGVIPAVLYSLLTGSVFLVPRLLVLLTSPLLAKFGSYKVILWSFYVKLSLPVVVFLAGRSNIWALYFFLIIDNSLPDATFSLFNLSVSDIIDADMEKYQRNAPVSSMIFGTNALFTKPAQSLAPMMVVHILSWYGYKDTQGNSKVSSGSPGQLLDAMFFLLCIIPLIIAMVQIVVWAFYPL 415          
BLAST of mRNA_Ecto-sp13_S_contig7314.18477.1 vs. uniprot
Match: UPI0009E1BEBD (transmembrane protein 180-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E1BEBD)

HSP 1 Score: 105 bits (262), Expect = 9.480e-21
Identity = 68/222 (30.63%), Postives = 113/222 (50.90%), Query Frame = 1
Query:  313 KQLSSHGNFWLYVSMNFMENFNALFDQSFF-VFLDTKLFERVVPRRPHGVLTALCLYAPKLMTQVLTPVADRYGTYKLIMGAALFKLVAGVLMFTCGRR-AWPLWTLLFLGNRLAATAWGFYNLSFSDVIDEDTLRNKRPESMSVSVHGLQALFVKPAQSLAPMFGMAFLPAGALKTDLVDMTVRQAEGVQA----AAFTLMWAVPAGCGLVQVLIWRAYRL 960
            KQ+ +  +F  +V+MNF + F+  F  +FF +F +  +   V+P   + +LT      P+L+  + +P+  R G+YK+I+ +   K+    +++  GR   W L+  L + N L    +  +NLS SD+ID D  + +R   +S  + G  ALF KPAQSLAPM  +  L     K  L     + + G       A F L+  +P    +VQ++ W+ Y L
Sbjct:  241 KQILTQRSFVCFVAMNFFQVFHTTFCSNFFLIFAEHLIGPDVIPAILYSLLTGSVFLLPRLLVLLTSPLLARLGSYKVILWSFYIKVSLPAIVYFAGRNNIWILYFFLIIDNSLPDATFSLFNLSVSDIIDHDMEKYQRNAPVSSMIFGTNALFTKPAQSLAPMMVVHILSWYGYKETLGVNKDKASSGTSPQLLDAMFFLLCLIPLVIAIVQIVFWKLYPL 462          
BLAST of mRNA_Ecto-sp13_S_contig7314.18477.1 vs. uniprot
Match: A0A7M7HE62_STRPU (Uncharacterized protein n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7HE62_STRPU)

HSP 1 Score: 104 bits (259), Expect = 2.280e-20
Identity = 69/223 (30.94%), Postives = 117/223 (52.47%), Query Frame = 1
Query:  313 KQLSSHGNFWLYVSMNFMENFNALFDQSFFVFLDTKLF-ERVVPRRPHGVLTALCLYAPKLMTQVLTPVADRYGTYKLIMGAALFKLVAGVLMFTCGRRAWPLWTLLFLGNR-LAATAWGFYNLSFSDVIDEDTLRNKRPESMSVSVHGLQALFVKPAQSLAPMFGMAFLPAGALKTDLVD--MTVRQAEGVQAAAFTLMWAVPAGCGLVQVLIWRAYRLHGA 969
            KQ+  + NF ++V +NF + F+  F  +F     T+L  E  + +     +       P+L+   L+    RYG+Y++I+ +  FK+ +  LMF  G +   +  L F+ +R L    + F+NL  SD+IDED L+++R   +S SV G  ALF KPA SLAPM  ++ L     K +L D  +++     ++   F L   +P   G +Q+++WR Y +  +
Sbjct:  243 KQIICNRNFLIFVFINFCQIFHMDFGANFLAIFVTQLIPEADLSQFFRKAMFGTTFIFPQLLVLFLSIFVSRYGSYRIIIWSFYFKICSAFLMFLIGAQHTHIMVLFFVMDRSLPEAIFSFFNLCLSDIIDEDQLKSQRASPLSSSVFGYNALFTKPASSLAPMMVVSILNKYGYK-ELQDEKLSLHDTTQLKGTMFILACFIPIIVGSLQLMVWRNYSIRSS 464          
BLAST of mRNA_Ecto-sp13_S_contig7314.18477.1 vs. uniprot
Match: UPI001BB1786D (transmembrane protein 180-like n=1 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1786D)

HSP 1 Score: 104 bits (259), Expect = 3.140e-20
Identity = 70/229 (30.57%), Postives = 118/229 (51.53%), Query Frame = 1
Query:  313 KQLSSHGNFWLYVSMNFMENFNALFDQSFFVFLDTKLF-ERVVPRRPHGVLTALCLYAPKLMTQVLTPVADRYGTYKLIMGAALFKLVAGVLMFTCGRRAWPLWTLLFLGNR-LAATAWGFYNLSFSDVIDEDTLRNKRPESMSVSVHGLQALFVKPAQSLAPMFGMAFLPAGALKTDLVD--MTVRQAEGVQAAAFTLMWAVPAGCGLVQVLIWRAYRLHGAALKDMK 987
            KQ+  + NF ++V +NF + F+  +  +F     T+L  E  + +     L       P+ +  +L+    RYG Y++I+ +  FK+ + + MF  G +   +    F+ +R L    + F+NL  SD+IDED LRNKR   +S SV G  ALF KPA SLAPM  +  L   + + +L D  ++++    ++   F L   +P   G +Q+L+WR Y +  + +   K
Sbjct:  297 KQIIFNRNFLIFVFINFCQIFHMNYGANFLAVFVTQLIPETDLSQFIRKALFGTTFILPQFLVLLLSIFVTRYGYYRIIVWSFYFKICSAIFMFLIGAQHTHIMVFFFIMDRSLPDAIFSFFNLCLSDIIDEDQLRNKRSSPLSSSVFGYNALFTKPASSLAPMMVVNILNRYSYQ-ELQDEKLSLQHTTELKGTMFILACFIPIIIGSLQLLVWRNYTIRSSHISVAK 524          
BLAST of mRNA_Ecto-sp13_S_contig7314.18477.1 vs. uniprot
Match: UPI000779F96B (transmembrane protein 180-like n=3 Tax=Acropora TaxID=6127 RepID=UPI000779F96B)

HSP 1 Score: 103 bits (257), Expect = 4.080e-20
Identity = 66/231 (28.57%), Postives = 117/231 (50.65%), Query Frame = 1
Query:  289 ELSFWGFTKQLSSHGNFWLYVSMNFMENFNALFDQSFF-VFLDTKLFERVVPRRPHGVLTALCLYAPKLMTQVLTPVADRYGTYKLIMGAALFKLVAGVLMFTCG-RRAWPLWTLLFLGNRLAATAWGFYNLSFSDVIDEDTLRNKRPESMSVSVHGLQALFVKPAQSLAPMFGMAFLPAGALKTDLVD-----MTVRQAEGVQAAAFTLMWAVPAGCGLVQVLIWRAYRL 960
            E+  +   KQ+ +  +F  +V+MNF + F+  F  +FF +F++  +    +P   + +LT      P+++    +P+  ++G+YK+I+ +   K+    L+F  G    W L+  L + N L    +  +NLS SD+ID+D  +  R   +S  + G  ALF KPAQSLAPM  +  L     K          ++V  ++ ++ A F L+  VP    + Q++ W+ Y L
Sbjct:  228 EVPLFTLIKQILTQRSFVCFVAMNFFQVFHTTFCSNFFLIFVEHLIGSDAIPAILYSLLTGSVFILPRILVLATSPLLAKFGSYKVILWSFYVKVSLPALVFLAGLNNIWILYIFLIVDNCLPDATFSLFNLSVSDIIDDDMEKYHRNAPISSMIFGTNALFTKPAQSLAPMMVVHILSRYGYKDSQQTGKGEIVSVIASQQLKDAMFCLLCMVPLVVAVFQIIFWKFYPL 458          
BLAST of mRNA_Ecto-sp13_S_contig7314.18477.1 vs. uniprot
Match: A0A8J9ZSW4_BRALA (MFSD13A protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZSW4_BRALA)

HSP 1 Score: 101 bits (252), Expect = 1.870e-19
Identity = 65/238 (27.31%), Postives = 119/238 (50.00%), Query Frame = 1
Query:  286 RELSFWGFTKQLSSHGNFWLYVSMNFMENFNALFDQSF-FVFLDTKLFERVVPRRPHGVLTALCLYAPKLMTQVLTPVADRYGTYKLIMGAALFKLVAGVLMFTCGRRAWPLWTLLFLGNRLAATAWGFYNLSFSDVIDEDTLRNKRPESMSVSVHGLQALFVKPAQSLAPMFGMAFLPAGALKTDLVDMTVR---------QAEGVQAAAFTLMWAVPAGCGLVQVLIWRAYRLHGA 969
            R  S W  + ++ +  +F L+V+MNF++ F+  F  SF  +F D  L + ++      +L       P++   +L+PV +R G+Y++I+G+   +LV    M+  G + W +   L +   +    +  +N+S SD+ID D+ +  R   +S    G+ ALF KPAQSLAPM  +  L     + +LV  T           + + ++   F +   +PA    +Q+L+W+ + L  +
Sbjct:  232 RSSSIWKLSWEIVTQKDFILFVTMNFLQIFHMTFLISFAMIFADNLLPKDMLSSLTRSLLYGSGFVIPQIAALLLSPVVERVGSYRVILGSFYLELVCAAGMYLAGPQPWLIVGYLLVDISIPGAIFSLFNISVSDIIDADSAKYARKTPLSSMFFGMNALFTKPAQSLAPMLVVTVLNRYGYE-ELVRSTAAPITAPGHDDEHDELRRVMFQIFCLLPATVAFLQILVWKPFGLRNS 468          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7314.18477.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTX4_9PHAE1.170e-21388.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI0001CBA6633.740e-2431.78transmembrane protein 180-like n=1 Tax=Saccoglossu... [more]
A0A369SLA8_9METZ2.100e-2329.06Transmembrane protein 180 n=1 Tax=Trichoplax sp. H... [more]
A0A6P8IHK0_ACTTE1.830e-2231.11transmembrane protein 180-like n=1 Tax=Actinia ten... [more]
A0A3M6TDC0_POCDA3.080e-2231.28Uncharacterized protein n=2 Tax=Pocillopora damico... [more]
UPI0009E1BEBD9.480e-2130.63transmembrane protein 180-like n=1 Tax=Orbicella f... [more]
A0A7M7HE62_STRPU2.280e-2030.94Uncharacterized protein n=1 Tax=Strongylocentrotus... [more]
UPI001BB1786D3.140e-2030.57transmembrane protein 180-like n=1 Tax=Lytechinus ... [more]
UPI000779F96B4.080e-2028.57transmembrane protein 180-like n=3 Tax=Acropora Ta... [more]
A0A8J9ZSW4_BRALA1.870e-1927.31MFSD13A protein n=1 Tax=Branchiostoma lanceolatum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7314contigEcto-sp13_S_contig7314:281..5441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score573.5
Seed ortholog evalue5.8e-161
Seed eggNOG ortholog2880.D7FLP1
Preferred nameMFSD13B
Model size1463
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.MFS/sugar transport protein
EggNOG OGs2CMK7@1,2QQN2@2759
Cds size933
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7314.18477.1prot_Ecto-sp13_S_contig7314.18477.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7314 407..5037 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463999.2434323-UTR-Ecto-sp13_S_contig7314:280..4061681463999.2434323-UTR-Ecto-sp13_S_contig7314:280..406Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7314 281..406 +
1681463999.3215973-UTR-Ecto-sp13_S_contig7314:5037..54411681463999.3215973-UTR-Ecto-sp13_S_contig7314:5037..5441Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7314 5038..5441 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463999.2632978-CDS-Ecto-sp13_S_contig7314:406..6241681463999.2632978-CDS-Ecto-sp13_S_contig7314:406..624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7314 407..624 +
1681463999.274652-CDS-Ecto-sp13_S_contig7314:954..10991681463999.274652-CDS-Ecto-sp13_S_contig7314:954..1099Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7314 955..1099 +
1681463999.2841766-CDS-Ecto-sp13_S_contig7314:2025..22261681463999.2841766-CDS-Ecto-sp13_S_contig7314:2025..2226Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7314 2026..2226 +
1681463999.2935495-CDS-Ecto-sp13_S_contig7314:3263..34371681463999.2935495-CDS-Ecto-sp13_S_contig7314:3263..3437Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7314 3264..3437 +
1681463999.303058-CDS-Ecto-sp13_S_contig7314:4146..42151681463999.303058-CDS-Ecto-sp13_S_contig7314:4146..4215Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7314 4147..4215 +
1681463999.3123505-CDS-Ecto-sp13_S_contig7314:4911..50371681463999.3123505-CDS-Ecto-sp13_S_contig7314:4911..5037Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7314 4912..5037 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7314.18477.1

>prot_Ecto-sp13_S_contig7314.18477.1 ID=prot_Ecto-sp13_S_contig7314.18477.1|Name=mRNA_Ecto-sp13_S_contig7314.18477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp
MRSRTPTRDSGPAGSAGGEGEAAAVAAERGGSQLGNAPLSPKTTAGGAGA
RGGRELSFWGFTKQLSSHGNFWLYVSMNFMENFNALFDQSFFVFLDTKLF
ERVVPRRPHGVLTALCLYAPKLMTQVLTPVADRYGTYKLIMGAALFKLVA
GVLMFTCGRRAWPLWTLLFLGNRLAATAWGFYNLSFSDVIDEDTLRNKRP
ESMSVSVHGLQALFVKPAQSLAPMFGMAFLPAGALKTDLVDMTVRQAEGV
QAAAFTLMWAVPAGCGLVQVLIWRAYRLHGAALKDMKMKLKEWERFLSYK
RDDATGVGMA*
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mRNA from alignment at Ecto-sp13_S_contig7314:281..5441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7314.18477.1 ID=mRNA_Ecto-sp13_S_contig7314.18477.1|Name=mRNA_Ecto-sp13_S_contig7314.18477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7314:281..5441+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGCCCAGGTCCCAGAACAAGACCCGCTGCTCGAAACCACTCCCCCGGC CTCCATCGCGCACACGGCGCCGCTCGACGGTGCAACCAAACCCAACTTCC GGAATAGCCAAGGCGCCGCCGTCGGCATGCGTTCTCGAACTCCCACGAGG GACAGCGGTCCCGCTGGTTCCGCCGGGGGCGAGGGAGAGGCAGCAGCGGT AGCAGCGGAGAGGGGGGGTTCGCAGCTTGGAAACGCTCCGTTGTCACCGA AGACGACCGCGGGGGGCGCCGGGGCTAGGGGCGGGCGGGAGCTGTCGTTT TGGGGGTTCACGAAGCAGCTCTCTTCCCACGGGAATTTCTGGCTGTACGT GCCCAGTTTCGTACGTTCTTCTGTAGACGGACATGGTTTTCTGGAATTTT GGTATGCTTCGGGTGGCCTTACGTGCTTGCGCGGTGCGGTCTTATCCTGC TACAGCCTCCGCTACGATTTTACACCCATCAGCTCTTGCGCTCTGTTCAA GTATCCCGGGCCGAGCTGCACAGCTCTCATGAGGTACACGACGTGGGTAG CGCCCCGCCTGCTGCCTTTTCAAAGTTCTCCGTTCTATCGAGGACTCGTG GTAATGTTCTGACGGCAAAGGCATCGTCCCCCCCCCCCCTTGTGTCTGTT CGTCCATGTGCCCCCTGATGAAAGGTACGTGTCGATGAACTTCATGGAGA ACTTCAACGCCTTGTTCGACCAGTCCTTCTTCGTCTTCCTTGACACGAAG CTCTTCGAGAGGGTCGTGCCGAGGAGGCCACACGGGGTCCTCACCGCCCT CTGCCTCTACGCCCCGAAGGTGCGGAATACGGCGTTGACCCGCATCGTAC TAGCGGAGCATGAAATTCGAATATCCCTCTCAAGAATCGTTCCTGTCTTC GAAAATATTAGTTGACCAATTGTGTGTGTTTGTTGCTAACATCGACCGCG TCAATCGGCTGACCAATGAAGTGACTTCAGTTTCAGTTCGGGTAATACTG GGCAGGGCTTGTAGAGGTCATGATCTGGGACCCAAGGGGTCACTTTGGAG GATAGGCTAGGCTTTCCTCGGCATTAAATGCGGGAAAGATTCGATCCGAT AGCTAGCGTTTCATTAAGCCTCGCCACCGTTTGCAGTGGCGGCCGTTTGT TCCCCTATTGATCCCTTCTTTCGCACTTTGCGCATCACTGAAGTCTGGCG AACGACCCATCGCTAGCCTATCTACCAGCTCCCCCGACCAACTGCTGTGG TACATTCTTTCTTCTTGAATGTCGCGATTTTTTTCTGGCTACCCATTCTT CCCCGCCGACACCTTGCAACTGCGTTTCACCGCCCTTGACAATGAACTGG TTGGGTCGCCACGCAGAGAAGTTCCTTCCCTCGGTTTGCCGGCGTCAAGC TTAGCCTTCGCGCCTATCAGGTCACCCCGGCGGGTCACCCGGATACATCA CGCAGAACGATCACCTAGGCAGAACAACATTTGTTCTGAACTCAAAGCTC CCCGCCCCCAACTCCGTGCTCTATCGTGCTCCCCCCCCCGCTTGGTCAAT GGTCTTACAACGAAGGTATGCAGAACATGAACACGCCCCCCCTCCCCCCC GGCCTCCCAAACCACGCCTGCACGACCGCATAGCCTGCAGCTTATGACCC CGGTTCTCACTCCCGTCGCCCACCGATACGTCTCCCCCCCCCATGCCGCC TCCGGCGTTACACGCCTGCACGATACACGACGGAACCGCGTGCAGCTTAT GACCCAGGTCCTCACGCCCGTCGCGGACCGGTACGGCACCTACAAGCTCA TCATGGGGGCGGCCTTGTTCAAGCTGGTCGCCGGGGTGCTGATGTTCACC TGCGGTAGGCGGGCGTGGCCGTTGTGGACGCTCCTGTTTCTAGGAAATCG CCTGGCGGCGACTGCTTGGGGCTTCTACAACCTCTCGTTCTCCGATGTGA GCGAGGAGGGGGTTCTCATAGCCGCACATGCTGTAGTCCTTGGACCATTG GCCACGTATCCCTACAAAGCAGCGACGGAGCACACCGGGTTCGCACCAAA CCAGGCTCGCACAAATACCAAACGCAATGGGGGGGGGGGGAGGCATCTCG TGAAAAAGTGCTTGTACGCGCGGAGGCGTAATCTAGTGTTTTGCATGCCT TAGCCTTTAGGCCATTGACCACGCGTCTTCGAGAGGACGGGGCGTTGTTC CCAAAGGACCGATCACCGATGGCCAATTGTTCCTTGAGTGAGCTGGGGAG GGAGAATCATAAGTCTTCTTTGCAGAGCGCGATGATCCCGCTGCCTAGGT TATCGAGCGTTCGATGCAGCCCGTCAACGCAAAAGTGTCGTGGGGGGGGT TCCGTGGTACCATGGGGGCTCCGGGAGCGGGGGAACGGGATCGTTGGCTG AGGTTTTAGCGACGCCAATTGCAGTGCTAAGGACTTTGATGAAGAGGTTC ATTAAAATTTTTTCTCCCACTTTGCACCGTCGTTTGAGCAGAGCGTTACC AGAATGATGTGGTTGGTTTTTCATCCATCAAGCGGTATTGTACGCCGTGG CGCGACGTACTTGAGGTAACACTTAAAACGCTTCAACCCCAATTTGCGAG TGTCGACGTTGGTCGAATTTTGCGATGTGTATCGCGTTATTTGTCGAGTG CTGTCAATCAATTCAATTCGACACGAGTCTACGTCGAATGTACCGCGTAG TATCTAGAATCACAACTCTCCGTCTTCTTGTCAAACGAGAAAAGGAGGCT CTGCCACAAGAAGTAAAGTGTACGTTAGTGCACTTGTTGTCATGCCAAGC ATCTCGTCCATGGTCTTCCATTTTCCATGCCACATGTTTTATTTCCCTCC AATATGCACAACGAACCCATATCAATCCACAGATGAGCCATGGATAACCT AATAGCAATGAATCCATGACTGCAGCGTCAGCGGAAGCACTATTATTCCC TAAGCAGCACACCTGTTTTTTTTGTTCCGAAAGGTGATCGACGAAGACAC CCTCCGCAACAAGAGGCCGGAGAGCATGTCGGTGTCGGTACACGGGCTAC AGGCGCTCTTCGTCAAGCCGGCGCAGAGCCTGGCGCCTATGTTCGGCATG GCTTTTCTGCCCGCGGGGGCGCTGAAGACAGACCTTGTGGACATGACCGT GCGGCAGGTGTGTGCCTACAAATATGTGCATACATTTTAATGTGTCCTGA GGGCTGTTGGCTCGCGCAGCAGTGGGTGTGGGTGTCTGAATGTGCACGGT GGGCATACGATCTACATAGTAGTACGTTTGTGGTGTTTCTTTGCTTGGCA AGCAATCCGCTTCGTGATAGCCGTGTGATGAGCAGCTGCAAGGACTGGTC GATGCTAGCCCGCGATTCTTGGCGCCTCAGGCAGGGATAGAGGGCGAGAC CCTTGATCCAGCAGTGTTTCGGGGCCCGCGATGGAGCTTCCGGGAATAAG CTCCAAATAGTTTGCCGCGAAGATGACGGAACGGTGATTGAAAGTCAATG TGTGAGGTGTGAGTTTCAAGCATGGGGTGGTGTGGGATATGGTGAGGCAT GTGGAGCACTATCGCTTGCCTCACTGAACAAACTAGCGCCTCTTCGGTTT CGAAGACGTCGATTTTGATGGGTTTCGTTTCATACTGCACAAGTCGTTCG GTGTAGGGTTCACGCGTCGTGCAGCTTGGTCTGGATTCCCATTTGTTCAG GGAAACGGACACAGCTGGCCGGTCGTCTACGTGTGCCCGCTTGCCGACAC ATGTTTGACATGGTTACTGCAGACACAAAAAACCGTGCGCCTGGGTGTTA TTTTCATCGTGCCCCTAACCGTATGCCCCCTATCTTGCACGCAACGTGAC TTTCGTGATGAAAAAGGCGGAAGGAGTCCAGGCGGCGGCGTTCACGCTCA TGTGGGCAGTGCCAGCCGGGTGTGGACTGGTACAGGTGGGTGGTGCCAAT GGACGAGTTGGGTTCAGTATGTGTCACGGTTGTGGCTTCCTTTGTGTCGT CGTCAACGCCGTTGAATTTTGTGTGCTTGAAAATCTCGTTGACCTTGGCC TCATCGATGTAGGTAACGCTTGGCGCACCCACACACCCACACAGAGGGAC GGAAGAACACAACTCCATACGCGCCTGACATGTCCTTGTGCTTTTGTACG CTGTCGCATTTTTTCGTGGCATGGCGAACCACGGGCTGTATCTGAAGAGA GGGTGTTTCCAAGTGAAAACGTCCCTTATTTCCGCAGTGGTGCTGTACGT GTGGGCTCTCCCAGGCCTCACGGTTCTATTCTGGGAAGGGTGTTCAAGGG GATGGAGGTGGATCGCCACCGCGTGGGGTTATGTTTTGTCAGAACTTATG TTTACTTTCTCTGTTTGCCATCTCCCCTCCCCTGTCTGTGGGGCATTCGG CAATCGACGACCCGACGTGAAATATCTGATGAATACGAGGCTCTCTAGGA GTAGCCATGGGTGTGGACAGGTACTCCTCCGGTTTTCAACGTGTGTATGC ATACATGCTCCCCTTTCTAATGACGAGCCGTCGTTTCTGATTTCGAAACC TCATTGTTCAATTCTTCATTTGACACACTTTCCGATGCTGCCGCCCTGCT ACCTCTGCCACCGCTGCCTGAACAATTGAAGGTGCTGATCTGGCGAGCCT ATCGGCTGCACGGAGCGGCACTCAAGGACATGAAAATGAAATTGAAGGAG TGGGAGAGATTTTTGAGCTACAAACGTGACGATGCGACGGGCGTGGGGAT GGCGTAGTAGCCGCCGCAGGCGTGCAGGACGCTCCTTGTTGATAGTCACG ATTTTTGTGGCTGTTGTGTAGTCCCTGTGGTTTGTTAATTGGGTGTTTGT TGTGCTTTCGTTCCATCTGTTGTGGGCACCAGTCTACGCCATGCGGTGTA TGCTTGAGCGGGATGCCTGGTTGCTTGGTAGCCCCGCCCACAACTCTGCA TTGTCAGTGTACCGTGTTCATGGAAAAAAGGCGTTTGTTTTCGTTTTTTT GCTGGGTTGCACCATCGGAGGGGTTTGTCTACACGGTGCCACGCCACCAC CATGGAGACTGACCGGATACTTTTGTTATTTACCACAGTCGCAGTTCGGA TATGTAGGAGACCAGCAACTAACTCTGTTATTCATCTTTTGGTCGTTTTC TCCCTTTCGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7314:281..5441+

>mRNA_Ecto-sp13_S_contig7314.18477.1 ID=mRNA_Ecto-sp13_S_contig7314.18477.1|Name=mRNA_Ecto-sp13_S_contig7314.18477.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7314:281..5441+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTTCTCGAACTCCCACGAGGGACAGCGGTCCCGCTGGTTCCGCCGG
GGGCGAGGGAGAGGCAGCAGCGGTAGCAGCGGAGAGGGGGGGTTCGCAGC
TTGGAAACGCTCCGTTGTCACCGAAGACGACCGCGGGGGGCGCCGGGGCT
AGGGGCGGGCGGGAGCTGTCGTTTTGGGGGTTCACGAAGCAGCTCTCTTC
CCACGGGAATTTCTGGCTGTACGTGTCGATGAACTTCATGGAGAACTTCA
ACGCCTTGTTCGACCAGTCCTTCTTCGTCTTCCTTGACACGAAGCTCTTC
GAGAGGGTCGTGCCGAGGAGGCCACACGGGGTCCTCACCGCCCTCTGCCT
CTACGCCCCGAAGCTTATGACCCAGGTCCTCACGCCCGTCGCGGACCGGT
ACGGCACCTACAAGCTCATCATGGGGGCGGCCTTGTTCAAGCTGGTCGCC
GGGGTGCTGATGTTCACCTGCGGTAGGCGGGCGTGGCCGTTGTGGACGCT
CCTGTTTCTAGGAAATCGCCTGGCGGCGACTGCTTGGGGCTTCTACAACC
TCTCGTTCTCCGATGTGATCGACGAAGACACCCTCCGCAACAAGAGGCCG
GAGAGCATGTCGGTGTCGGTACACGGGCTACAGGCGCTCTTCGTCAAGCC
GGCGCAGAGCCTGGCGCCTATGTTCGGCATGGCTTTTCTGCCCGCGGGGG
CGCTGAAGACAGACCTTGTGGACATGACCGTGCGGCAGGCGGAAGGAGTC
CAGGCGGCGGCGTTCACGCTCATGTGGGCAGTGCCAGCCGGGTGTGGACT
GGTACAGGTGCTGATCTGGCGAGCCTATCGGCTGCACGGAGCGGCACTCA
AGGACATGAAAATGAAATTGAAGGAGTGGGAGAGATTTTTGAGCTACAAA
CGTGACGATGCGACGGGCGTGGGGATGGCGTAG
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