mRNA_Ecto-sp13_S_contig7306.18467.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7306.18467.1
Unique NamemRNA_Ecto-sp13_S_contig7306.18467.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7306.18467.1 vs. uniprot
Match: A0A6H5KW93_9PHAE (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW93_9PHAE)

HSP 1 Score: 217 bits (553), Expect = 7.140e-61
Identity = 176/193 (91.19%), Postives = 178/193 (92.23%), Query Frame = 1 
Query:  190 QNSYIRRRSSSYGDPNSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVTPHRKTAKSPSPAFYSPVRQAPANHAKLSGGTHKKYVKVGGPTTVASRSFMQQHAEAXXXXXXXXXXRASSNSGSPPRAMSATSGSQAGSDEKDRSVNSDEALGVVDEEGLGLGGRRDREKKQFGT 768
            QNSYIRRRSSS GDP+SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         SV PHRKTAKSPSPAFYSPVRQAPANHAKLSGGTHKKYVKVGGPTTVASR FMQQHAE XXXXXXXXXX  SSNSGSPPRAMSATSGSQAGSDEKDRSVNSD+ALGVVDEEGLGLGGRRDREKKQFGT
Sbjct: 1738 QNSYIRRRSSSSGDPHSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTPSSGSV-SVAPHRKTAKSPSPAFYSPVRQAPANHAKLSGGTHKKYVKVGGPTTVASRLFMQQHAEXXXXXXXXXXXXXSSNSGSPPRAMSATSGSQAGSDEKDRSVNSDDALGVVDEEGLGLGGRRDREKKQFGT 1929
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BLAST of mRNA_Ecto-sp13_S_contig7306.18467.1 vs. uniprot
Match: D8LNZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNZ6_ECTSI)

HSP 1 Score: 174 bits (441), Expect = 5.430e-46
Identity = 105/108 (97.22%), Postives = 105/108 (97.22%), Query Frame = 1 
Query:  448 QAPANHAKLSGGTHKKYVKVGGPTTVASRSFMQQHAEAXXXXXXXXXXRASSNSGSPPRAMSATSGSQAGSDEKDRSVNSDEALGVVDEEGLGLGGRRDREKKQFGTR 771
            QAPANHAKLSGGTHKKYVKVGGPTTVASRSFMQQHAEAXXXXXXXXXX ASSNSGSPPRAMSATSGSQAGSDEKDRSVNSDEALGVVDEE LGLGGRRDREKKQ GTR
Sbjct:  728 QAPANHAKLSGGTHKKYVKVGGPTTVASRSFMQQHAEAXXXXXXXXXXXASSNSGSPPRAMSATSGSQAGSDEKDRSVNSDEALGVVDEEALGLGGRRDREKKQLGTR 835
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7306.18467.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KW93_9PHAE7.140e-6191.19Kinesin motor domain-containing protein n=1 Tax=Ec... [more]
D8LNZ6_ECTSI5.430e-4697.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7306contigEcto-sp13_S_contig7306:1243..3049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size774
Hectar predicted targeting categoryother localisation
Exons3
Cds size774
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463998.5735326-CDS-Ecto-sp13_S_contig7306:1242..16921681463998.5735326-CDS-Ecto-sp13_S_contig7306:1242..1692Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7306 1243..1692 +
1681463998.5882103-CDS-Ecto-sp13_S_contig7306:2146..22541681463998.5882103-CDS-Ecto-sp13_S_contig7306:2146..2254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7306 2147..2254 +
1681463998.600022-CDS-Ecto-sp13_S_contig7306:2833..30491681463998.600022-CDS-Ecto-sp13_S_contig7306:2833..3049Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7306 2834..3049 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7306.18467.1prot_Ecto-sp13_S_contig7306.18467.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7306 1243..3049 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7306.18467.1

>prot_Ecto-sp13_S_contig7306.18467.1 ID=prot_Ecto-sp13_S_contig7306.18467.1|Name=mRNA_Ecto-sp13_S_contig7306.18467.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=258bp
GAAGALLSRGTAYTLPPLQFFFLPLVRHAPPWAGGDPAGAPTYPRSCGWR
GRGPRVEKRIVGPQNSYIRRRSSSYGDPNSSSQSHSHGHGHGHASSITTP
PRSRTTSTTTPATTPTSTPTPTPSSGSVSVTPHRKTAKSPSPAFYSPVRQ
APANHAKLSGGTHKKYVKVGGPTTVASRSFMQQHAEAAAAAAAVETSRAS
SNSGSPPRAMSATSGSQAGSDEKDRSVNSDEALGVVDEEGLGLGGRRDRE
KKQFGTR*
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mRNA from alignment at Ecto-sp13_S_contig7306:1243..3049+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7306.18467.1 ID=mRNA_Ecto-sp13_S_contig7306.18467.1|Name=mRNA_Ecto-sp13_S_contig7306.18467.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1807bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7306:1243..3049+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCCGCCGGGGCGTTGCTTTCACGCGGCACCGCCTATACCCTCCCGCC
TCTCCAATTTTTTTTTTTACCACTGGTGCGCCATGCGCCGCCTTGGGCGG
GCGGGGACCCGGCCGGCGCACCGACGTACCCGCGCTCCTGTGGTTGGCGT
GGCCGTGGCCCGCGCGTCGAAAAACGGATTGTCGGTCCGCAGAACTCGTA
CATCCGACGGCGGTCGTCTTCGTACGGGGACCCCAACTCCTCCTCCCAGT
CTCACTCCCACGGCCACGGCCACGGCCATGCCTCCTCCATTACCACTCCT
CCTCGCTCCCGCACTACTTCTACAACAACACCGGCAACCACTCCGACGTC
AACGCCGACGCCGACACCGAGTTCTGGTTCTGTTTCCGTCACCCCTCACC
GTAAGACTGCGAAGAGTCCCTCTCCCGCCTTTTACTCGCCCGTTCGCCAG
GTGGGCGGGGACTCGGCGGCGCGATTCGAACGGCTCTTGTTGTCATGTAT
TCGACGAAAGCGAAGTGCCAAAAATAAGCGGTTCCGAACGACTCTTGCAA
CGAATGGCCCTGTCGATTAAATATTTTGCCCTTGAGTCGACAGGCAAAGA
GGGGGGTTCTACATCTCACGTTCTTCGGCCGCTTTTTTTTTGTTTTGACG
AGGGTGAGGGGGGGCCCGTGGTGGTCGTGCGGGGAAGGGGGGGGGGGGGT
CAACGCGTCGATTGAAGCCTTAAGTACGCCTTGCGCGTTTCGTCGGAGCC
GTTGTTGTCTGTTATCTCCAGCTTTAGAGGGTGCGATGTCTTTTCTCTCT
CGCAGAGATTTGTGGTTTCGCTATCGTAACTTGTGCCCCCTACCTCTTTT
GTCTGAATGTTGTGTTTTCTTCTCGCCGCCCCCTCCACCCCTGGCGGCTT
TCAGGCTCCGGCTAACCACGCTAAGCTCAGTGGTGGCACGCACAAGAAGT
ACGTGAAAGTGGGTGGGCCAACGACGGTTGCGTCGAGGTCGTTCATGCAG
CAGCACGCCGAGGTATGCTGTGCTGTGGCGTCGTCGTTGTTGTCTAGGTC
GTCATCGTTGTTGTCTTAGTCGTCGTTGTTGCTGTCTTAGTCGTCGTCGT
TGTTGTCTTAGTCGTCGTCGTTGTTGTCTTAATCGTTTTTGTTGTCTTAG
TCGTCGTTGTTGCTGGCGTCGTCTTTTTCAAGTTGTCATTGTTGCTGCTT
TTTTGTGTTGCTGCGATTATTTTTGGTACACGTATAGGTGTTGTTTTCAA
AGTTGATCACTTTGCTCGGTGTCGCCTGCTGTTCCAACCGATAACGAACG
AAGGAGCTTCCTTCGGGTCATGATGTGATGGCGTTTCTCTCTGTTCATGG
TTCGTTTTATCTGGCACCATCGAATTACCACATCGTCACGCCCTCCCACC
AAGCTCTATACCCCTACAACAGAGCCCGACGTTACTTCATCTCAAGCCTC
GAGATGCGGGCCATTATTCGCAGAAACCGCACTGCTGCTGTCCGTGGATG
ATAAGAATTCAGTATCCTGTGGGTGTGGTGTGCATCTCTCCATCTAAAAA
AGCAAAACCCCCCTTCGTGATCGGTCCTGCCACCGAAGCAGGCTGCTGCT
GCCGCCGCCGCTGTCGAGACGTCGCGTGCATCCAGCAATAGTGGGTCCCC
TCCCCGGGCGATGTCAGCTACTTCCGGTAGCCAGGCCGGATCGGACGAGA
AGGATCGATCGGTCAACAGCGACGAAGCCCTGGGAGTTGTGGACGAGGAG
GGGCTGGGGTTGGGGGGGAGGAGAGACAGAGAAAAGAAGCAGTTCGGTAC
TAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7306:1243..3049+

>mRNA_Ecto-sp13_S_contig7306.18467.1 ID=mRNA_Ecto-sp13_S_contig7306.18467.1|Name=mRNA_Ecto-sp13_S_contig7306.18467.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=774bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7306:1243..3049+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCCGCCGGGGCGTTGCTTTCACGCGGCACCGCCTATACCCTCCCGCC
TCTCCAATTTTTTTTTTTACCACTGGTGCGCCATGCGCCGCCTTGGGCGG
GCGGGGACCCGGCCGGCGCACCGACGTACCCGCGCTCCTGTGGTTGGCGT
GGCCGTGGCCCGCGCGTCGAAAAACGGATTGTCGGTCCGCAGAACTCGTA
CATCCGACGGCGGTCGTCTTCGTACGGGGACCCCAACTCCTCCTCCCAGT
CTCACTCCCACGGCCACGGCCACGGCCATGCCTCCTCCATTACCACTCCT
CCTCGCTCCCGCACTACTTCTACAACAACACCGGCAACCACTCCGACGTC
AACGCCGACGCCGACACCGAGTTCTGGTTCTGTTTCCGTCACCCCTCACC
GTAAGACTGCGAAGAGTCCCTCTCCCGCCTTTTACTCGCCCGTTCGCCAG
GCTCCGGCTAACCACGCTAAGCTCAGTGGTGGCACGCACAAGAAGTACGT
GAAAGTGGGTGGGCCAACGACGGTTGCGTCGAGGTCGTTCATGCAGCAGC
ACGCCGAGGCTGCTGCTGCCGCCGCCGCTGTCGAGACGTCGCGTGCATCC
AGCAATAGTGGGTCCCCTCCCCGGGCGATGTCAGCTACTTCCGGTAGCCA
GGCCGGATCGGACGAGAAGGATCGATCGGTCAACAGCGACGAAGCCCTGG
GAGTTGTGGACGAGGAGGGGCTGGGGTTGGGGGGGAGGAGAGACAGAGAA
AAGAAGCAGTTCGGTACTAGGTAA
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