mRNA_Ecto-sp13_S_contig7299.18459.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7299.18459.1
Unique NamemRNA_Ecto-sp13_S_contig7299.18459.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7299.18459.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 226 bits (576), Expect = 1.540e-65
Identity = 118/134 (88.06%), Postives = 121/134 (90.30%), Query Frame = 1 
Query:    1 RIDPLDEAYVLGLFERPDVTVVIKGLANGLDPHLWNTRYLNERCGEMMYHSFRRFTRPGGARRGPFVPIPIREEAWSSMRLRDFVRYLNKRADAKRARAIATAAAAPTVEAPSAAAA-PGQPNASVRGRNSGSV 399
            RIDPLDEAYVLGLFERPDVTVVI GLANGLDPHLWNTRYLNERCGEMMYHSFRRFTRPGGARRGPFVPIP+REEAWSSMRLRD+VRYLNK ADAKRARA       P  EAPSAAAA PGQP+ASV GRNSGSV
Sbjct:   42 RIDPLDEAYVLGLFERPDVTVVINGLANGLDPHLWNTRYLNERCGEMMYHSFRRFTRPGGARRGPFVPIPVREEAWSSMRLRDYVRYLNKLADAKRARATXXXXXXPADEAPSAAAAEPGQPDASVPGRNSGSV 175
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7299.18459.1 vs. uniprot
Match: A0A7S2B8L6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B8L6_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 7.750e-15
Identity = 40/95 (42.11%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:    4 IDPLDEAYVLGLFERPDVTVVIKGLANGLDPHLWNTRYLNERCGEMMYHSFRRFTRPGGARRGPFVPIPIREEAWSSMRLRDFVRYLNKRADAKR 288
            +DP D+ Y+  L ++PDVT+++KGL +GL PHLW+  YL  RCG++M H  R F       R       +  E W SMRL D++ YL  R  A R
Sbjct:   19 LDPDDDDYLHRLLDQPDVTLIVKGLGDGLTPHLWSEPYLKSRCGDLMLHKLRCFR----GSRNKCAQDSVETE-WKSMRLNDYMGYLEARQKAHR 108
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7299.18459.1 vs. uniprot
Match: A0A7S2SQY1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY1_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 3.140e-13
Identity = 40/93 (43.01%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    4 IDPLDEAYVLGLFERPDVTVVIKGLANGLDPHLWNTRYLNERCGEMMYHSFRRFTRPGGARRGPFVPIPIREEAWSSMRLRDFVRYLNKRADA 282
            + P DEAY+  L +RPD+TV+I+GL++GL PHLW+  YL  RC ++M H  R F R     R P     +  E W SM +  +  YL  RA A
Sbjct:  476 VHPDDEAYICQLLDRPDLTVIIRGLSDGLSPHLWSIPYLRSRCRDLMVHKLRCFRR-----RSPSSTESLETE-WRSMPVHSYCNYLEARAAA 562
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7299.18459.1 vs. uniprot
Match: B8CCF4_THAPS (RanBP2-type domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCF4_THAPS)

HSP 1 Score: 57.4 bits (137), Expect = 1.490e-6
Identity = 31/96 (32.29%), Postives = 48/96 (50.00%), Query Frame = 1 
Query:   16 DEAYVLGLFERPDVTVVIKGLANGLDPHLWNTRYLNERCGEMMYHSFRRFTRPGGARRGPFVPIPIREEA----------WSSMRLRDFVRYLNKR 273
            DE ++  + ER D+TV+ +GLA+G++P LWN  Y+    G   +H FR F +      G  V     +E           W SM + D+  YL++R
Sbjct:  461 DEVFLFKMMERDDITVISEGLADGINPSLWNKEYIRNCIGSEFHHKFRGFEKSSHKSFGGDVADDEDKEETVVQYEEMKNWYSMTVSDYYGYLDRR 556
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7299.18459.1 vs. uniprot
Match: A0A7S3ZG35_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZG35_9EUKA)

HSP 1 Score: 55.1 bits (131), Expect = 7.790e-6
Identity = 29/71 (40.85%), Postives = 38/71 (53.52%), Query Frame = 1 
Query:   61 VVIKGLANGLDPHLWNTRYLNERCGEMMYHSFRRFTRPGGARRGPFVPIPIREEAWSSMRLRDFVRYLNKR 273
            V+IKGL   L   LWNT YL ++ G MMYH FRR+     +           E+ W SM + D+ RYL+ R
Sbjct:   18 VIIKGLGRRLSHELWNTPYLFQKLGPMMYHRFRRYCLVDSSHTQGGFEKRYEEKDWLSMTIGDYQRYLDAR 88
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7299.18459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LCL4_ECTSI1.540e-6588.06ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A7S2B8L6_9STRA7.750e-1542.11Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2SQY1_9STRA3.140e-1343.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
B8CCF4_THAPS1.490e-632.29RanBP2-type domain-containing protein (Fragment) n... [more]
A0A7S3ZG35_9EUKA7.790e-640.85Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7299contigEcto-sp13_S_contig7299:4540..6301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score227.6
Seed ortholog evalue4.1e-57
Seed eggNOG ortholog2880.D8LCL4
Model size494
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
Cds size492
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463997.7163925-CDS-Ecto-sp13_S_contig7299:4541..47761681463997.7163925-CDS-Ecto-sp13_S_contig7299:4541..4776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7299 4542..4776 -
1681463997.7273245-CDS-Ecto-sp13_S_contig7299:5238..53521681463997.7273245-CDS-Ecto-sp13_S_contig7299:5238..5352Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7299 5239..5352 -
1681463997.7367308-CDS-Ecto-sp13_S_contig7299:6158..63011681463997.7367308-CDS-Ecto-sp13_S_contig7299:6158..6301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7299 6159..6301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7299.18459.1prot_Ecto-sp13_S_contig7299.18459.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7299 4542..6301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7299.18459.1

>prot_Ecto-sp13_S_contig7299.18459.1 ID=prot_Ecto-sp13_S_contig7299.18459.1|Name=mRNA_Ecto-sp13_S_contig7299.18459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=164bp
RIDPLDEAYVLGLFERPDVTVVIKGLANGLDPHLWNTRYLNERCGEMMYH
SFRRFTRPGGARRGPFVPIPIREEAWSSMRLRDFVRYLNKRADAKRARAI
ATAAAAPTVEAPSAAAAPGQPNASVRGRNSGSVAGGVENGGSNGGRSGGR
GRAGGKAGSPEEGQ
back to top

mRNA from alignment at Ecto-sp13_S_contig7299:4540..6301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7299.18459.1 ID=mRNA_Ecto-sp13_S_contig7299.18459.1|Name=mRNA_Ecto-sp13_S_contig7299.18459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1762bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7299:4540..6301- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGATAGACCCGTTGGACGAGGCGTACGTGCTGGGGCTGTTCGAGAGGCC
GGACGTAACGGTCGTCATCAAGGGCCTGGCGAACGGCCTGGACCCGCACT
TGTGGAACACCCGCTACCTCAACGAGCGATGCGGGGAGATGATGTGAGGT
ATTTTCTTTTTGTTTCAGAAATACGCATACGATCACTTTTTCTTCCGTTG
TTGAGAAAAGCAAAGAAAAAGCCGCGTCGAATTCATGGGCGAACGAGATA
CGGAGAGGAACACCAGCATACGTATTGTTCTTGAAAGTATATGGCGAATT
CTTCTTCTCGCGTCTTTTGCTTCCTTGGAGACACTGCTGTCTTGCGCAGA
TTCTCACGAAAGTGTACCATGGTATCACGCATAGGACGTGGTATGCATAT
ACATGTATCTTTACCATCGAAGTATCAGGGAGCACCAGCACCAGCAGAGC
TCATGGTCGCGGTGGCCCGCACTCGCCACGGAAATGCGATCTGTCGTTTA
ATTCATCGGCGTGTTCTTTCTGTTTGCCAATCATACATGATATCTGCACC
ATACGTAGATGGCAAGTTCGACTTGGGATGACGAATATCAGCAGGGCCGT
AAGAGTCTGCACCATACGTACGTAGGTGGCAAGTTCGACTTCAAATGTCG
GGACATCAGCACACCTTTAAAAAAAGTCTCTTCTTCCAGCGCTTCTACAA
CGCTGCGCCCCCGAAATTCCCAGGTGCCCGTCGCCACGCCGAGGGACGAG
GCAACCACGTCTTCGGGTGTAGGCCTTGCCATCACATGCTTCTGCTCCCC
CCCCCCCCAACACGAGTGCTCTGTCCTGTGGAGGACGCGTGGTCAATATG
GTCTAACAACTAAGGCACGGAGAAAAATTCACACCACCTTCTCGCTCTTT
GCGAAACCCGATCATTACCCTACCCTGCTGCTGCACACGCACATGGCAGG
TACCACAGCTTCCGGAGGTTCACGCGGCCAGGCGGAGCCCGCCGGGGACC
TTTCGTTCCCATCCCCATCCGGGAGGAGGCGTGGTCCTCGATGCGTCTAC
GCGACTTTGTGCGGTGGGTTCCCCCCCCCCCCCCCCACCCCCTCTCCCGG
TGTTGGTTCTCGCGACGGAGCACTCCGATAACAAAACGCCTGCCTGCAAC
GAAAAATGGCCTGCCTTTGCCACACCTGTAGTGTGGGCTAACTGATGCGC
TCTTTGACGTTGGAAAATGGTGCGCTGAGTCCTGGCCGTGCGTGCTGGTT
CATCTTGATCCTCCTGGTTTTCCAAGCGACCGTGTGTGCTGCTTGCTTCT
TCTTGATCCTCCTGGTTTCCAAGCGCCATCGCAGCAAGCGAGGGGAAAAC
CCTCCTCCATGTAGTACTACCTTCGCCGTTCCAATGAAGGTGGCCGTTTT
TCGGGAACTGCTGCTGTGACCGCAGCTTGTTGTTTTTTCCCGACATGTCG
CTAAAAGTCAGATCCGCTGCTCGAAGCGAAAGAAGAAGCCGTGTGATTCC
ATTCTCGTCTCTTCTCGACGGCCAGGTACCTCAACAAACGAGCCGACGCG
AAGCGGGCCAGGGCCATCGCCACGGCTGCCGCCGCCCCAACTGTTGAAGC
CCCGTCAGCGGCGGCGGCACCGGGGCAGCCGAATGCCTCCGTGCGGGGGC
GAAATTCTGGCAGTGTGGCGGGCGGTGTTGAGAACGGTGGCAGTAATGGA
GGGCGGTCGGGGGGAAGAGGTCGGGCCGGCGGTAAGGCTGGCTCCCCGGA
AGAAGGTCAGCA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7299:4540..6301-

>mRNA_Ecto-sp13_S_contig7299.18459.1 ID=mRNA_Ecto-sp13_S_contig7299.18459.1|Name=mRNA_Ecto-sp13_S_contig7299.18459.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=492bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7299:4540..6301- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGATAGACCCGTTGGACGAGGCGTACGTGCTGGGGCTGTTCGAGAGGCC
GGACGTAACGGTCGTCATCAAGGGCCTGGCGAACGGCCTGGACCCGCACT
TGTGGAACACCCGCTACCTCAACGAGCGATGCGGGGAGATGATGTACCAC
AGCTTCCGGAGGTTCACGCGGCCAGGCGGAGCCCGCCGGGGACCTTTCGT
TCCCATCCCCATCCGGGAGGAGGCGTGGTCCTCGATGCGTCTACGCGACT
TTGTGCGGTACCTCAACAAACGAGCCGACGCGAAGCGGGCCAGGGCCATC
GCCACGGCTGCCGCCGCCCCAACTGTTGAAGCCCCGTCAGCGGCGGCGGC
ACCGGGGCAGCCGAATGCCTCCGTGCGGGGGCGAAATTCTGGCAGTGTGG
CGGGCGGTGTTGAGAACGGTGGCAGTAATGGAGGGCGGTCGGGGGGAAGA
GGTCGGGCCGGCGGTAAGGCTGGCTCCCCGGAAGAAGGTCAG
back to top