mRNA_Ecto-sp13_S_contig7299.18458.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7299.18458.1
Unique NamemRNA_Ecto-sp13_S_contig7299.18458.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7299.18458.1 vs. uniprot
Match: D8LCL4_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 5.000e-32
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1 
Query:    1 DSLFRMPHCDGATPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 165
            DSLFRMPHCDGATPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK
Sbjct:  425 DSLFRMPHCDGATPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 479
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BLAST of mRNA_Ecto-sp13_S_contig7299.18458.1 vs. uniprot
Match: A0A7S2DKI0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKI0_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.280e-23
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1 
Query:    1 DSLFRMPHCDGATPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 165
            D+L+ MPH DG  P WPT   +E LR+LN+CPSVFTLEPGEFVHINKGRLHAFRK
Sbjct:  154 DALYGMPHNDGQKPSWPTPSQIESLRDLNYCPSVFTLEPGEFVHINKGRLHAFRK 208
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BLAST of mRNA_Ecto-sp13_S_contig7299.18458.1 vs. uniprot
Match: A0A7S2SQY1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.650e-18
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:    1 DSLFRMPHCDGATPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 165
            D+L+  PH  G  PPWPT+  ++ LR   +CPSVFTLEPG++VHINKGRLHAFRK
Sbjct:  743 DALYGKPHDAGEKPPWPTETQIDELRRRGYCPSVFTLEPGDYVHINKGRLHAFRK 797
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BLAST of mRNA_Ecto-sp13_S_contig7299.18458.1 vs. uniprot
Match: A0A448ZRZ6_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZRZ6_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.770e-16
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 DSLFRMPHCDGA--TPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 165
            D L+ MPH DG    PPWPT + +E  R++ +CPSV  LEPG+ VHINKGRLHAFRK
Sbjct:  739 DGLYSMPHGDGLGKKPPWPTKDMLEDCRKMGYCPSVLILEPGDLVHINKGRLHAFRK 795
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BLAST of mRNA_Ecto-sp13_S_contig7299.18458.1 vs. uniprot
Match: A0A7S2NZI7_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NZI7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.410e-16
Identity = 35/57 (61.40%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 DSLFRMPHCDGAT--PPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 165
            D+L+ +PH DG    P WPT + V R RE+N+CPSVF L+P + VHINKGRLHAFRK
Sbjct:   17 DALYGLPHGDGYVDKPEWPTHDVVSRWREMNYCPSVFILKPNQHVHINKGRLHAFRK 73
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BLAST of mRNA_Ecto-sp13_S_contig7299.18458.1 vs. uniprot
Match: A0A7S4EEL1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEL1_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.420e-16
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:    1 DSLFRMPHCDGA--TPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 165
            D L+ +PH DG    PPWP+++ VE  + + +CPS+F LEPG+ VHINKGRLHAFRK
Sbjct:  724 DGLYSVPHGDGLGKKPPWPSNDMVEECKTMGYCPSIFILEPGDLVHINKGRLHAFRK 780
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BLAST of mRNA_Ecto-sp13_S_contig7299.18458.1 vs. uniprot
Match: A0A7S3Q867_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q867_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 6.160e-16
Identity = 33/55 (60.00%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 DSLFRMPHCDGATPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 165
            D+L+ +PH DG  P WP  EA++   ELN+ P VF L+PG+F+HINKGRLHAFRK
Sbjct:  613 DALYGLPHHDGKKPLWPDHEAIKNCDELNYYPCVFILKPGQFLHINKGRLHAFRK 667
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BLAST of mRNA_Ecto-sp13_S_contig7299.18458.1 vs. uniprot
Match: A0A7S1ZIK7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIK7_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.010e-15
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:    1 DSLFRMPHCDGA--TPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 165
            D+L+ +PH DG    P WP  E++ER R++N+ PSVF L+PG+ VHINKGRLHAFRK
Sbjct:  805 DALYGLPHEDGCGERPMWPDCESIERCRKMNYYPSVFILKPGQHVHINKGRLHAFRK 861
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BLAST of mRNA_Ecto-sp13_S_contig7299.18458.1 vs. uniprot
Match: A0A1E7FK00_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK00_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.550e-14
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 1 
Query:    1 DSLFRMPHCDG--ATPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 165
            + L+ +PH DG  + P WPT + VE  + + +CPS+ TL PGE +HINKGRLHAFRK
Sbjct:  716 EGLYSVPHGDGLGSKPKWPTMDMVEECKRMGYCPSLLTLGPGELIHINKGRLHAFRK 772
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BLAST of mRNA_Ecto-sp13_S_contig7299.18458.1 vs. uniprot
Match: A0A7S3L187_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L187_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 3.560e-14
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 DSLFRMPHCDG---ATPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK 165
            D+L+  PH  G     P WPT + V R R +N+CP+VF L+PG+ +HINKGRLHAFRK
Sbjct: 1205 DALYGKPHDSGMGIVRPDWPTVDTVSRWRGMNYCPAVFILKPGQHIHINKGRLHAFRK 1262
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7299.18458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LCL4_ECTSI5.000e-32100.00ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A7S2DKI0_9STRA7.280e-2374.55Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
A0A7S2SQY1_9STRA1.650e-1863.64Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A448ZRZ6_9STRA1.770e-1661.40Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2NZI7_9STRA2.410e-1661.40Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4EEL1_9STRA2.420e-1657.89Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S3Q867_9STRA6.160e-1660.00Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1ZIK7_9STRA4.010e-1559.65Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A1E7FK00_9STRA3.550e-1454.39Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S3L187_9STRA3.560e-1455.17Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7299contigEcto-sp13_S_contig7299:448..1519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score114.4
Seed ortholog evalue1.5e-23
Seed eggNOG ortholog2880.D8LCL4
Model size165
KEGG koko:K15255
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
Cds size150
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463997.6456969-CDS-Ecto-sp13_S_contig7299:447..5311681463997.6456969-CDS-Ecto-sp13_S_contig7299:447..531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7299 448..531 -
1681463997.662298-CDS-Ecto-sp13_S_contig7299:1438..15041681463997.662298-CDS-Ecto-sp13_S_contig7299:1438..1504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7299 1439..1504 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463997.6732492-UTR-Ecto-sp13_S_contig7299:1504..15191681463997.6732492-UTR-Ecto-sp13_S_contig7299:1504..1519Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7299 1505..1519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7299.18458.1prot_Ecto-sp13_S_contig7299.18458.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7299 448..1504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7299.18458.1

>prot_Ecto-sp13_S_contig7299.18458.1 ID=prot_Ecto-sp13_S_contig7299.18458.1|Name=mRNA_Ecto-sp13_S_contig7299.18458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
MPHCDGATPPWPTDEAVERLRELNFCPSVFTLEPGEFVHINKGRLHAFRK
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mRNA from alignment at Ecto-sp13_S_contig7299:448..1519-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7299.18458.1 ID=mRNA_Ecto-sp13_S_contig7299.18458.1|Name=mRNA_Ecto-sp13_S_contig7299.18458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1072bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7299:448..1519- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAGCTTGTTCAGGATGCCGCACTGTGACGGGGCGACGCCGCCGTGGCC
CACGGACGAAGCCGTCGAGCGGCTCCGCGAGGTCAGTCACACGAGGAAAG
AGAGGGGGTGGGGGTGGGGGAGGGGCCGTCTGCCCACGCTTCAGCACAAA
TTCCCCCCCAAGCTAGCGTGTGAGGTTACATGCTACAGCAGCAACAGTAG
TATCACGCAGGGATGGGTAAAAACAACGGCAATCATTCTCCCAAACAAGC
GTCAGGTTGCATGCACCACGGAAAGTCACGCAGGAACAGGAGGGGGGGAA
AGGGGGGAACGTTTGCGGGTTGATTCTGCGGTGGGGATGGGGTGGATGGA
GGACGGTGCACTGGGTTGAGTGTTTGTCAGAGCGCGGATTGCTGATTGTT
CTTGACGGCGTGCCAACAGTAGATCGATCGATTGTGTGTGTGTTTTGTGT
GCGCGTTTTGATGTTGTTGTCTTCTGTGCTTTGTATCATCTTGCAGTACA
GGCTGCTTGTCTTGGCTGCTGTACTATGCCTAACTTTCTCCGAAGTACTG
CTATACGTGTGCCATTTTTTTTTGTTTTGTTTTTGCTTGTGCCGTCGTTC
GCGTCATGCTTGTCTCGCTCCCGCTTGTGGGCAGCAGCGGTTGAGTCTGT
CGGCGGCTCTGACCTGGGTCACATTCTCCTCTTCGCACATCTGCCTGAAT
GTCTCTCTCGCACACGCAAGGCACCTCCTCCTCACCGTCTACGTTTTCTG
TCGCCTCCTACCGTCTTCCTGTCCGTGCGCATTTGGTTTTTGGCGTTGAC
CCCCCCCCCGTTCCCCCCTCCGCTTGGTGATGTGAGAGCCTGGTCCGGTG
AGAACCCGGCGTGCTCCGTCCCGGCTTTGTAGGGATGCGAGGTCAATGGT
CTAACGACTACGGCATGCACGACTATGAGTACACTCCCGCCCCCCACCCC
CCCACCCCCTTCCCCCCTCCGGCCCGCTCTGACCCCAGCTGAACTTCTGC
CCCAGCGTATTCACCCTCGAGCCGGGGGAGTTCGTGCACATCAACAAGGG
TCGTCTTCACGCCTTCCGGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7299:448..1519-

>mRNA_Ecto-sp13_S_contig7299.18458.1 ID=mRNA_Ecto-sp13_S_contig7299.18458.1|Name=mRNA_Ecto-sp13_S_contig7299.18458.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7299:448..1519- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGCACTGTGACGGGGCGACGCCGCCGTGGCCCACGGACGAAGCCGT
CGAGCGGCTCCGCGAGCTGAACTTCTGCCCCAGCGTATTCACCCTCGAGC
CGGGGGAGTTCGTGCACATCAACAAGGGTCGTCTTCACGCCTTCCGGAAG
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