mRNA_Ecto-sp13_S_contig7297.18452.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7297.18452.1
Unique NamemRNA_Ecto-sp13_S_contig7297.18452.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7297.18452.1 vs. uniprot
Match: D7G3I7_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I7_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 8.670e-37
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 EGECWHELKDEDGSVYYFNATSGMSQWEPPMWLDEIDPTTXXXXXXXXXXXXXXXXRPEEFIPIVRENPYATTPEQDFIKSV 246
            EGECWHELKDEDGSVYYFNATSGMSQWEPPMWLDEIDPTTXXXXXXXXXXXXXXXXRPEEFIPIVRENPYATTPEQDFIKSV
Sbjct:  944 EGECWHELKDEDGSVYYFNATSGMSQWEPPMWLDEIDPTTXXXXXXXXXXXXXXXXRPEEFIPIVRENPYATTPEQDFIKSV 1025
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BLAST of mRNA_Ecto-sp13_S_contig7297.18452.1 vs. uniprot
Match: A0A7S2CLZ4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CLZ4_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.510e-14
Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 1 
Query:   16 HELKDEDGSVYYFNATSGMSQWEPPMWLDEIDPTTXXXXXXXXXXXXXXXXRPEEFIPIVRENPYATTPEQDFIKSV 246
            +EL+DE G +YYFN+ +G+S W PP W+D +DP +XXXXXXXXXXXXXXX  P +FIP+VRE  Y+T PE  F+KSV
Sbjct:   46 YELRDEAGDLYYFNSGTGVSDWNPPEWIDSVDPQSXXXXXXXXXXXXXXXEVPFDFIPVVREEAYST-PEAQFVKSV 121
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BLAST of mRNA_Ecto-sp13_S_contig7297.18452.1 vs. uniprot
Match: A0A7S1TP40_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TP40_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.320e-12
Identity = 50/78 (64.10%), Postives = 60/78 (76.92%), Query Frame = 1 
Query:   13 WHELKDEDGSVYYFNATSGMSQWEPPMWLDEIDPTTXXXXXXXXXXXXXXXXRPEEFIPIVRENPYATTPEQDFIKSV 246
            W+EL+D  G +YYFN+++G+SQW+PP W DE D   XXXXXXXXXXXXXXXX  E FIP+VRE  Y+T P  DFIK V
Sbjct:  628 WYELRDSTGELYYFNSSTGISQWDPPPWFDETDXXXXXXXXXXXXXXXXXXXXXEGFIPVVREEVYST-PGADFIKDV 704
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BLAST of mRNA_Ecto-sp13_S_contig7297.18452.1 vs. uniprot
Match: D0NAF0_PHYIT (WW domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NAF0_PHYIT)

HSP 1 Score: 50.8 bits (120), Expect = 2.090e-5
Identity = 20/32 (62.50%), Postives = 28/32 (87.50%), Query Frame = 1 
Query:    1 EGECWHELKD-EDGSVYYFNATSGMSQWEPPM 93
            EG+ WHE++D E G V+Y+NAT+G+SQWEPP+
Sbjct:  227 EGDQWHEVRDVERGEVWYYNATTGVSQWEPPV 258
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BLAST of mRNA_Ecto-sp13_S_contig7297.18452.1 vs. uniprot
Match: A0A6A3WIR1_9STRA (WW domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WIR1_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 4.600e-5
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 EGECWHELKD-EDGSVYYFNATSGMSQWEPP 90
            +G+ WHE++D E G V+Y+NAT+G+SQWEPP
Sbjct:   63 DGDQWHEVRDVEGGEVWYYNATTGVSQWEPP 93
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BLAST of mRNA_Ecto-sp13_S_contig7297.18452.1 vs. uniprot
Match: A0A6G0L121_9STRA (WW domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0L121_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 5.060e-5
Identity = 19/31 (61.29%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 EGECWHELKD-EDGSVYYFNATSGMSQWEPP 90
            +G+ WHE++D E G V+Y+NAT+G+SQWEPP
Sbjct:  209 DGDQWHEVRDVEGGEVWYYNATTGVSQWEPP 239
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BLAST of mRNA_Ecto-sp13_S_contig7297.18452.1 vs. uniprot
Match: A0A7S0ZVC1_NOCSC (Protein YIPF n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S0ZVC1_NOCSC)

HSP 1 Score: 48.9 bits (115), Expect = 9.140e-5
Identity = 18/35 (51.43%), Postives = 23/35 (65.71%), Query Frame = 1 
Query:   13 WHELKDEDGSVYYFNATSGMSQWEPPMWLDEIDPT 117
            WH    EDG+ YY NA + ++QWEPP W D +D T
Sbjct:   20 WHAYTTEDGTEYYHNAVTQVTQWEPPAWPDSLDTT 54
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BLAST of mRNA_Ecto-sp13_S_contig7297.18452.1 vs. uniprot
Match: A0A225VU40_9STRA (WW domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VU40_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 9.990e-5
Identity = 18/28 (64.29%), Postives = 25/28 (89.29%), Query Frame = 1 
Query:   13 WHELKD-EDGSVYYFNATSGMSQWEPPM 93
            WHE++D E G ++Y+NAT+GMSQWEPP+
Sbjct:  217 WHEVRDIERGEIWYYNATTGMSQWEPPL 244
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7297.18452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7G3I7_ECTSI8.670e-37100.00Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A7S2CLZ4_9STRA4.510e-1462.34Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S1TP40_9STRA1.320e-1264.10Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
D0NAF0_PHYIT2.090e-562.50WW domain-containing protein n=2 Tax=Phytophthora ... [more]
A0A6A3WIR1_9STRA4.600e-561.29WW domain-containing protein n=2 Tax=Phytophthora ... [more]
A0A6G0L121_9STRA5.060e-561.29WW domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A7S0ZVC1_NOCSC9.140e-551.43Protein YIPF n=1 Tax=Noctiluca scintillans TaxID=2... [more]
A0A225VU40_9STRA9.990e-564.29WW domain-containing protein n=1 Tax=Phytophthora ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7297contigEcto-sp13_S_contig7297:5510..6091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size247
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHeat shock protein 40 like protein/ DnaJ domain containing protein
Ec32 orthologEc-19_004750.1
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463997.3738594-CDS-Ecto-sp13_S_contig7297:5510..57131681463997.3738594-CDS-Ecto-sp13_S_contig7297:5510..5713Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7297 5511..5713 -
1681463997.3842912-CDS-Ecto-sp13_S_contig7297:6048..60911681463997.3842912-CDS-Ecto-sp13_S_contig7297:6048..6091Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7297 6049..6091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7297.18452.1prot_Ecto-sp13_S_contig7297.18452.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7297 5511..6091 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7297.18452.1

>prot_Ecto-sp13_S_contig7297.18452.1 ID=prot_Ecto-sp13_S_contig7297.18452.1|Name=mRNA_Ecto-sp13_S_contig7297.18452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
EGECWHELKDEDGSVYYFNATSGMSQWEPPMWLDEIDPTTGAVYYVNTFT
GDPQWERPEEFIPIVRENPYATTPEQDFIKSV
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mRNA from alignment at Ecto-sp13_S_contig7297:5510..6091-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7297.18452.1 ID=mRNA_Ecto-sp13_S_contig7297.18452.1|Name=mRNA_Ecto-sp13_S_contig7297.18452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7297:5510..6091- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGAGAATGCTGGCACGAGCTCAAGGACGAAGATGGATCAGGTTCGGT
TAGATGTGTTTGGAGTCGCCGGCACTCCGTTCGTCCTTGCATGGTTGATG
GGATGACCGAGCACAACACGCCTTCGATGTTGTTGTTGTTGTTGTTGATG
TTGATGATGTTGTTGTTGATGATTGTTGTTGTTGTTGTTGTTCTTGTTGT
TCTTGTTGTTGTTGTTGTTGTTCTTATTCTTGTTCTTCGCCGTTCCTTCT
TTTTGTTCGTCTCCTTGTTGTTTTGTCGCCGTCGTTGTCGTCGTCGTCGC
TCGCAGTGACGTCGTTCCCAGACTTGTTCCTTTCACCGTCTTGACTTCCC
AGTACCCTACCCCCTCGCTCTTGAACAGTGTACTACTTCAATGCGACGTC
GGGGATGAGCCAATGGGAGCCGCCTATGTGGCTAGACGAGATCGACCCCA
CCACCGGGGCCGTCTACTACGTCAATACTTTCACAGGGGATCCCCAGTGG
GAGCGCCCGGAGGAGTTCATCCCGATCGTGAGAGAAAACCCCTATGCCAC
GACGCCTGAGCAGGACTTCATCAAATCCGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7297:5510..6091-

>mRNA_Ecto-sp13_S_contig7297.18452.1 ID=mRNA_Ecto-sp13_S_contig7297.18452.1|Name=mRNA_Ecto-sp13_S_contig7297.18452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7297:5510..6091- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGAGAATGCTGGCACGAGCTCAAGGACGAAGATGGATCAGTGTACTA
CTTCAATGCGACGTCGGGGATGAGCCAATGGGAGCCGCCTATGTGGCTAG
ACGAGATCGACCCCACCACCGGGGCCGTCTACTACGTCAATACTTTCACA
GGGGATCCCCAGTGGGAGCGCCCGGAGGAGTTCATCCCGATCGTGAGAGA
AAACCCCTATGCCACGACGCCTGAGCAGGACTTCATCAAATCCGTG
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