mRNA_Ecto-sp13_S_contig72852.18441.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72852.18441.1
Unique NamemRNA_Ecto-sp13_S_contig72852.18441.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72852.18441.1 vs. uniprot
Match: A0A6P0NH41_9CYAN (30S ribosomal protein S12 n=53 Tax=cellular organisms TaxID=131567 RepID=A0A6P0NH41_9CYAN)

HSP 1 Score: 231 bits (589), Expect = 1.270e-76
Identity = 117/124 (94.35%), Postives = 121/124 (97.58%), Query Frame = 1 
Query:    1 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGMKKPVK 372
            MPTIQQLIRVRR KI+ R KSPALK+CPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDT+GVKDRRQGRSKYG+KKPVK
Sbjct:    1 MPTIQQLIRVRRTKIKDRGKSPALKNCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTVGVKDRRQGRSKYGVKKPVK 124
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BLAST of mRNA_Ecto-sp13_S_contig72852.18441.1 vs. uniprot
Match: A0A7S6U9Z3_9STRA (30S ribosomal protein S12, chloroplastic n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Z3_9STRA)

HSP 1 Score: 222 bits (566), Expect = 4.100e-73
Identity = 111/124 (89.52%), Postives = 118/124 (95.16%), Query Frame = 1 
Query:    1 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGMKKPVK 372
            MPTIQQL+R  RKK+Q RTKSPALK+CPQRRGVCTRV+TITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYH++RGTLD+IGVKDRRQ RSKYG KKP K
Sbjct:    1 MPTIQQLVRTTRKKVQTRTKSPALKNCPQRRGVCTRVYTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHVVRGTLDSIGVKDRRQRRSKYGTKKPRK 124
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BLAST of mRNA_Ecto-sp13_S_contig72852.18441.1 vs. uniprot
Match: A0A8E5XRI9_9PHAE (30S ribosomal protein S12, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRI9_9PHAE)

HSP 1 Score: 219 bits (559), Expect = 4.780e-72
Identity = 111/122 (90.98%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:    1 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGMKKP 366
            MPTIQQLIRV RKKIQPRTKSPALKSCPQRRGVCTRV+TI PKKPNSA+RKVARVRLTSGFEVTAYIPG+ H LQEHSVVLLRGGRVKDLPGVRYHIIRGTLD+ GVK+RRQGRSKYG+KKP
Sbjct:    1 MPTIQQLIRVPRKKIQPRTKSPALKSCPQRRGVCTRVYTIAPKKPNSAVRKVARVRLTSGFEVTAYIPGVDHTLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDSGGVKNRRQGRSKYGVKKP 122
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BLAST of mRNA_Ecto-sp13_S_contig72852.18441.1 vs. uniprot
Match: K9TNW7_9CYAN (30S ribosomal protein S12 n=68 Tax=cellular organisms TaxID=131567 RepID=K9TNW7_9CYAN)

HSP 1 Score: 218 bits (555), Expect = 1.950e-71
Identity = 108/122 (88.52%), Postives = 116/122 (95.08%), Query Frame = 1 
Query:    1 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGMKKP 366
            MPTIQQLIR  R+KI+ +TKSPALKSCPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV++RGGRVKDLPGVRYHIIRGTLDT GVKDRRQGRSKYG K+P
Sbjct:    1 MPTIQQLIRTERQKIEKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQGRSKYGAKRP 122
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BLAST of mRNA_Ecto-sp13_S_contig72852.18441.1 vs. uniprot
Match: A0A3G1IVK8_9EUKA (Ribosomal protein S12 n=3 Tax=Glaucocystophyceae TaxID=38254 RepID=A0A3G1IVK8_9EUKA)

HSP 1 Score: 216 bits (550), Expect = 1.130e-70
Identity = 108/122 (88.52%), Postives = 114/122 (93.44%), Query Frame = 1 
Query:    1 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGMKKP 366
            MPTIQQLIR++RKKI  +TKSPALK CPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHIIRG LD  GVKDRRQGRSKYG KKP
Sbjct:    1 MPTIQQLIRLKRKKIDKKTKSPALKGCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIIRGALDAAGVKDRRQGRSKYGTKKP 122
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BLAST of mRNA_Ecto-sp13_S_contig72852.18441.1 vs. uniprot
Match: K9S9M0_9CYAN (30S ribosomal protein S12 n=17 Tax=cellular organisms TaxID=131567 RepID=K9S9M0_9CYAN)

HSP 1 Score: 215 bits (547), Expect = 3.230e-70
Identity = 107/122 (87.70%), Postives = 115/122 (94.26%), Query Frame = 1 
Query:    1 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGMKKP 366
            MPTIQQLIR  R+K + +TKSPALKSCPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV++RGGRVKDLPGVRYHIIRGTLDT GVKDRRQGRSKYG K+P
Sbjct:    1 MPTIQQLIRSERQKAKKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRRQGRSKYGAKRP 122
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BLAST of mRNA_Ecto-sp13_S_contig72852.18441.1 vs. uniprot
Match: A0A385KE48_9EMBR (30S ribosomal protein S12, chloroplastic n=6 Tax=Embryophyta TaxID=3193 RepID=A0A385KE48_9EMBR)

HSP 1 Score: 214 bits (544), Expect = 8.970e-70
Identity = 104/122 (85.25%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:    1 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGMKKP 366
            MPTIQQLIR +RK ++ RTKSPAL+ CPQRRGVCTRV+T TPKKPNSA+RKVARV+LTSGFE+TAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHI+RGTLDT+GVKDR+QGRSKYG+KKP
Sbjct:    1 MPTIQQLIRNQRKLVKNRTKSPALQGCPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDTVGVKDRKQGRSKYGVKKP 122
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BLAST of mRNA_Ecto-sp13_S_contig72852.18441.1 vs. uniprot
Match: A0A0P8BUW8_9CYAN (30S ribosomal protein S12 n=11 Tax=cellular organisms TaxID=131567 RepID=A0A0P8BUW8_9CYAN)

HSP 1 Score: 214 bits (544), Expect = 9.270e-70
Identity = 106/122 (86.89%), Postives = 113/122 (92.62%), Query Frame = 1 
Query:    1 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGMKKP 366
            MPTIQQL+R  RKK   +TKSPALKSCPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV+LRGGRVKDLPGVRYHI+RGTLDT GVKDRRQ RSKYG K+P
Sbjct:    1 MPTIQQLVRSERKKAHKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMLRGGRVKDLPGVRYHIVRGTLDTAGVKDRRQSRSKYGAKRP 122
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BLAST of mRNA_Ecto-sp13_S_contig72852.18441.1 vs. uniprot
Match: RR12_ANTAG (30S ribosomal protein S12, chloroplastic n=5 Tax=Embryophyta TaxID=3193 RepID=RR12_ANTAG)

HSP 1 Score: 213 bits (543), Expect = 1.270e-69
Identity = 103/122 (84.43%), Postives = 117/122 (95.90%), Query Frame = 1 
Query:    1 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGMKKP 366
            MPTIQQLIR +R+ ++ RTKSPAL+ CPQRRGVCTRV+T TPKKPNSA+RKVARV+LTSGFE+TAYIPGIGHNLQEHSVVL+RGGRVKDLPGVRYHI+RGTLDT+GVKDR+QGRSKYG+KKP
Sbjct:    1 MPTIQQLIRSKRQLVKSRTKSPALQGCPQRRGVCTRVYTTTPKKPNSALRKVARVKLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDTVGVKDRKQGRSKYGVKKP 122
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BLAST of mRNA_Ecto-sp13_S_contig72852.18441.1 vs. uniprot
Match: D8FXL5_9CYAN (30S ribosomal protein S12 n=43 Tax=Cyanobacteria TaxID=1117 RepID=D8FXL5_9CYAN)

HSP 1 Score: 213 bits (543), Expect = 1.550e-69
Identity = 106/122 (86.89%), Postives = 115/122 (94.26%), Query Frame = 1 
Query:    1 MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRGTLDTIGVKDRRQGRSKYGMKKP 366
            MPTIQQLIR  R++ Q +TKSPALKSCPQRRGVCTRV+T TPKKPNSA+RKVARVRLTSGFEVTAYIPGIGHNLQEHSVV++RGGRVKDLPGVRYHIIRGTLDT GVKDR+QGRSKYG K+P
Sbjct:    1 MPTIQQLIRSAREETQKKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTSGFEVTAYIPGIGHNLQEHSVVMIRGGRVKDLPGVRYHIIRGTLDTAGVKDRKQGRSKYGAKRP 122
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72852.18441.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P0NH41_9CYAN1.270e-7694.3530S ribosomal protein S12 n=53 Tax=cellular organi... [more]
A0A7S6U9Z3_9STRA4.100e-7389.5230S ribosomal protein S12, chloroplastic n=1 Tax=S... [more]
A0A8E5XRI9_9PHAE4.780e-7290.9830S ribosomal protein S12, chloroplastic n=1 Tax=I... [more]
K9TNW7_9CYAN1.950e-7188.5230S ribosomal protein S12 n=68 Tax=cellular organi... [more]
A0A3G1IVK8_9EUKA1.130e-7088.52Ribosomal protein S12 n=3 Tax=Glaucocystophyceae T... [more]
K9S9M0_9CYAN3.230e-7087.7030S ribosomal protein S12 n=17 Tax=cellular organi... [more]
A0A385KE48_9EMBR8.970e-7085.2530S ribosomal protein S12, chloroplastic n=6 Tax=E... [more]
A0A0P8BUW8_9CYAN9.270e-7086.8930S ribosomal protein S12 n=11 Tax=cellular organi... [more]
RR12_ANTAG1.270e-6984.4330S ribosomal protein S12, chloroplastic n=5 Tax=E... [more]
D8FXL5_9CYAN1.550e-6986.8930S ribosomal protein S12 n=43 Tax=Cyanobacteria T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72852contigEcto-sp13_S_contig72852:195..569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score248.1
Seed ortholog evalue2.2e-63
Seed eggNOG ortholog2880.D1J727
Preferred namerps12
Model size375
KEGG koko:K02950,ko:K02992
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005840,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009987,GO:0010467,GO:0019538,GO:0031976,GO:0031984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.structural constituent of ribosome
EggNOG OGsCOG0048@1,KOG1750@2759
Cds size375
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463996.5501955-CDS-Ecto-sp13_S_contig72852:194..5691681463996.5501955-CDS-Ecto-sp13_S_contig72852:194..569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72852 195..569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72852.18441.1prot_Ecto-sp13_S_contig72852.18441.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72852 195..569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72852.18441.1

>prot_Ecto-sp13_S_contig72852.18441.1 ID=prot_Ecto-sp13_S_contig72852.18441.1|Name=mRNA_Ecto-sp13_S_contig72852.18441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MPTIQQLIRVRRKKIQPRTKSPALKSCPQRRGVCTRVHTITPKKPNSAIR
KVARVRLTSGFEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIIRG
TLDTIGVKDRRQGRSKYGMKKPVK*
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mRNA from alignment at Ecto-sp13_S_contig72852:195..569-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72852.18441.1 ID=mRNA_Ecto-sp13_S_contig72852.18441.1|Name=mRNA_Ecto-sp13_S_contig72852.18441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72852:195..569- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTACTATACAACAGCTTATCCGAGTACGTCGTAAAAAAATTCAACC
TAGAACAAAGTCTCCTGCATTAAAAAGTTGTCCTCAACGTAGAGGTGTAT
GCACCAGGGTTCATACCATAACACCAAAAAAGCCAAACTCCGCTATAAGA
AAAGTTGCACGAGTAAGGCTAACCTCTGGGTTTGAAGTGACAGCATATAT
ACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTTTTATTACGAG
GAGGAAGAGTAAAGGATTTACCAGGGGTACGTTATCATATTATCAGAGGG
ACTCTTGACACAATCGGAGTAAAAGATAGACGCCAAGGTCGTTCAAAATA
CGGTATGAAAAAACCAGTAAAATAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72852:195..569-

>mRNA_Ecto-sp13_S_contig72852.18441.1 ID=mRNA_Ecto-sp13_S_contig72852.18441.1|Name=mRNA_Ecto-sp13_S_contig72852.18441.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72852:195..569- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTACTATACAACAGCTTATCCGAGTACGTCGTAAAAAAATTCAACC
TAGAACAAAGTCTCCTGCATTAAAAAGTTGTCCTCAACGTAGAGGTGTAT
GCACCAGGGTTCATACCATAACACCAAAAAAGCCAAACTCCGCTATAAGA
AAAGTTGCACGAGTAAGGCTAACCTCTGGGTTTGAAGTGACAGCATATAT
ACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTTTTATTACGAG
GAGGAAGAGTAAAGGATTTACCAGGGGTACGTTATCATATTATCAGAGGG
ACTCTTGACACAATCGGAGTAAAAGATAGACGCCAAGGTCGTTCAAAATA
CGGTATGAAAAAACCAGTAAAATAA
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