mRNA_Ecto-sp13_S_contig7283.18437.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7283.18437.1
Unique NamemRNA_Ecto-sp13_S_contig7283.18437.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7283.18437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7283contigEcto-sp13_S_contig7283:6197..7571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size289
Hectar predicted targeting categoryother localisation
Exons2
Cds size288
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463996.2523003-UTR-Ecto-sp13_S_contig7283:6196..61971681463996.2523003-UTR-Ecto-sp13_S_contig7283:6196..6197Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7283 6197..6197 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463996.2696068-CDS-Ecto-sp13_S_contig7283:6197..63641681463996.2696068-CDS-Ecto-sp13_S_contig7283:6197..6364Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7283 6198..6364 +
1681463996.278982-CDS-Ecto-sp13_S_contig7283:7450..75711681463996.278982-CDS-Ecto-sp13_S_contig7283:7450..7571Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7283 7451..7571 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7283.18437.1prot_Ecto-sp13_S_contig7283.18437.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7283 6198..7571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7283.18437.1

>prot_Ecto-sp13_S_contig7283.18437.1 ID=prot_Ecto-sp13_S_contig7283.18437.1|Name=mRNA_Ecto-sp13_S_contig7283.18437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=96bp
MAMYDGTEVEDVCNACVALRAEGYNRIFFREVSDSTWGTDVPYDASSSGS
GGGNDSFPFLVDNCPLCYGSERASIIEGGAGSIGQEFCDICIGLE*
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mRNA from alignment at Ecto-sp13_S_contig7283:6197..7571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7283.18437.1 ID=mRNA_Ecto-sp13_S_contig7283.18437.1|Name=mRNA_Ecto-sp13_S_contig7283.18437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7283:6197..7571+ (Ectocarpus species13 EcNAP12_S_4_19m)
CATGGCCATGTACGACGGGACCGAGGTTGAGGACGTCTGCAACGCCTGCG
TGGCTCTCAGGGCGGAGGGGTACAACCGCATCTTTTTCCGCGAAGTTTCC
GATTCGACGTGGGGCACAGACGTGCCGTATGATGCTTCTTCTTCTGGTAG
CGGAGGTGGCAACGATAGGTGAGGCTATGGGATCCACGCTGTTTGCACAC
GTCATCGAGGCTCGGGCGACGCCATTTTTTCTGGTTGATCCTGCTCGTCA
CAATGGCCCCGTGTTTTCTAGGGGGGAGCCCGGACGACCGTTTTACTTGG
AACGTGTGACTCGTGTAGGGGCAGTCTTGTCGTATGCTGTAATACCTCTC
ACAACAGTTTTATGGCCTTTTTTCTTGATGGGTAAGTTTAGTTGCTTCGA
GTTGTTCGATCTGCAATGAGGTAGAGGTGCTTTGAAGTCTTGGCGGTCAC
CCATCAGGGTTACCCATCAGGGTAGTCTCGATCGATAACCGCCATTGCGG
CGAAATCCATCACATTTGGAGGCCATATCTTTTCTCGGCAGGCAACCGTG
AACCGTTCGTCATCTTTCGCCATGGGTCAACAGCTGGCATCCGTTTGGTT
TCGTCGGTCTTGTTTCAGTGTTGGTTTAGGAGAGATGTCTTCGGTGCTTT
CTTTTTGTCATGCGCATGTCGTTTTCTGCGTTAAAGGATAGGAACAAAGG
CTTCCTGCCAACATTGCTCGGCGATATGCACGTTTCTCCCCAACGATACA
ACAACAGATGAGAACAAGAAACCAGAAAAGGAGCATGTCTTCTGTTTTGG
TGTTGCGCAGTAACTCGCATATCTCGTAGATCGACCGCTCTTGATTCGTG
TCCCACTCAAACGAGGAAGGGACCACCCAATACAGCAGTACAGTGCCAGA
CGTATTGTGTTACGATACTCATCCCAACACACAAGAACATGAATTTGGGA
GAGGCTCACGAAGTTCATATGTTCGCTCTCTGTGCCCCCCTACTTCTGTG
CCCCCCCCCCCCCGTTCCAATTTCTTGTGGCCGCCCTCTTTATGTCCCCC
GCAACTTCACCGCCCTCCCCTCCCCCTCAATATTTCCCGGTGTGGCATGT
TGACACCTGGGCCACTCTGACCTCCGGCCTTCCTGTCGTCTGCGTGTGCA
GCTACACTCCGTTTTGAACGGTCTCGCTTGTTTTCGATTTGATGGGGTGC
TGTTCGCATGCGCTTGCCTGCTTGCATGTGTGATTTTTTTTCTTTTTTTG
GCAGTTTCCCCTTCCTGGTGGACAACTGCCCGCTGTGCTACGGATCGGAG
CGGGCTTCGATTATCGAGGGCGGGGCGGGCTCCATCGGGCAAGAGTTCTG
CGACATCTGTATCGGCTTGGAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7283:6197..7571+

>mRNA_Ecto-sp13_S_contig7283.18437.1 ID=mRNA_Ecto-sp13_S_contig7283.18437.1|Name=mRNA_Ecto-sp13_S_contig7283.18437.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=288bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7283:6197..7571+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCATGTACGACGGGACCGAGGTTGAGGACGTCTGCAACGCCTGCGT
GGCTCTCAGGGCGGAGGGGTACAACCGCATCTTTTTCCGCGAAGTTTCCG
ATTCGACGTGGGGCACAGACGTGCCGTATGATGCTTCTTCTTCTGGTAGC
GGAGGTGGCAACGATAGTTTCCCCTTCCTGGTGGACAACTGCCCGCTGTG
CTACGGATCGGAGCGGGCTTCGATTATCGAGGGCGGGGCGGGCTCCATCG
GGCAAGAGTTCTGCGACATCTGTATCGGCTTGGAGTGA
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