mRNA_Ecto-sp13_S_contig7283.18435.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7283.18435.1
Unique NamemRNA_Ecto-sp13_S_contig7283.18435.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7283.18435.1 vs. uniprot
Match: D7G2W8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2W8_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 1.250e-57
Identity = 93/95 (97.89%), Postives = 94/95 (98.95%), Query Frame = 1 
Query:  124 MMGSQSRWGWSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRLVAYLVFFLLFFGILILESDVTFQHSVETGMKKFINQ 408
            MMGSQSRWGWSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRLVAYLVFFLLFFGILILESDVTFQHSVETG+ KFINQ
Sbjct:    1 MMGSQSRWGWSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRLVAYLVFFLLFFGILILESDVTFQHSVETGITKFINQ 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7283.18435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2W8_ECTSI1.250e-5797.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7283contigEcto-sp13_S_contig7283:1259..3105 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size473
Hectar predicted targeting categoryother localisation
Exons3
Cds size471
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463996.3075616-CDS-Ecto-sp13_S_contig7283:1258..14331681463996.3075616-CDS-Ecto-sp13_S_contig7283:1258..1433Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7283 1259..1433 -
1681463996.3265777-CDS-Ecto-sp13_S_contig7283:1860..20011681463996.3265777-CDS-Ecto-sp13_S_contig7283:1860..2001Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7283 1861..2001 -
1681463996.343009-CDS-Ecto-sp13_S_contig7283:2950..31051681463996.343009-CDS-Ecto-sp13_S_contig7283:2950..3105Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7283 2951..3105 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7283.18435.1prot_Ecto-sp13_S_contig7283.18435.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7283 1259..3105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7283.18435.1

>prot_Ecto-sp13_S_contig7283.18435.1 ID=prot_Ecto-sp13_S_contig7283.18435.1|Name=mRNA_Ecto-sp13_S_contig7283.18435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=157bp
MWFTGRQPAADSRKSATATSLRSSRLLLGHYGDGSRSVGGSMMGSQSRWG
WSRSETERLVRLQAVVRGWLLRRKVNWIPARDLEAVLKDLDQRDKGLRRL
VAYLVFFLLFFGILILESDVTFQHSVETGMKKFINQVRPGTSMRNKRSSC
VRTLRLV
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mRNA from alignment at Ecto-sp13_S_contig7283:1259..3105-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7283.18435.1 ID=mRNA_Ecto-sp13_S_contig7283.18435.1|Name=mRNA_Ecto-sp13_S_contig7283.18435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1847bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7283:1259..3105- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTTCACGGGGAGACAGCCGGCGGCCGACTCGCGCAAAAGTGCTAC
TGCTACGTCGTTGCGAAGCAGTAGGCTACTACTCGGACATTACGGCGATG
GCAGCAGGAGCGTTGGAGGGAGCATGATGGGAAGCCAATCCCGGTGGGGA
TGGAGGTAGGTGCGTCGGCGGGCGGGGCTACCTTCTTGTGTGTGAGATCA
TGACTATTGGAGGTCTGCGTTGGTGTGAGGCGACCTTACGAATTTGTCGA
AAGCATGGTTGTACGGCAAGACGAACAGCCCATGAGCCGTCCTATGCACA
CATGCACACACTACGAGCAAAACAAGCAACAAGTGGTCACACTTTTGTTG
CAGCCCTGTGTGAACCCTAGAACCCTTGGCTTCATCAGAGGACCGAGTGG
TAAGCACTTCTGCGCTGCTATGATCGTAGAACACTCCGCTTGGTGGAATC
GCGCGATGCACTGCCCAAAGCTACTGCTGCATGGTATGTGACATGCTTCA
AGCAAGCACATGAAGACTAAAACACATGTACAACAGTAGTGGGACCTTAC
CCCGTGCTCGATGGTGTAGCCTACTTCGTGGCTGTAGAACATAGCCAAGG
GTCGTGAATAGCAAGCGCACACAGACAGGCGGATAGGGAGCACAACGACC
TCTCTGTGGCATAATAGGTACTTGGGGTGGCGCTGTAGCTCATGGACGAT
GAACTGCTGGGTTCTACAGCGGCTTGCAACATCCCAATGCACGGTTCAGC
AGTCCCACGCCACCTCAGTGCACGGGCTCTCCTGTCTTGTCCCTCTCGGT
TGTACCATCTGCGAGCCCCCCCCCGTGGATGAAAGTAGTTAGAACAACCA
CAATTTGAATGCCCACCCTTTTACGGTCTCGCCTTCTGCACGTCCACCTT
CTACTTGGGGCCAAATCCAGTTGTGACCACGCAAAAGCTTGTTTGGTTGC
CATCACAATTACTTACTCGGAGTACGTTTGGAACAAGAGGAGGCCGGCCT
ACGGGCAAACAACAAAGATGCTCGTGACCCCCCCCTGTCCATTTCCCGTG
TGCGTGTGCCTGCTCCTCCTAATGGTTGACCGTAAAACATGGTGGTACTG
CTAGCCGGTCAGAGACCGAGCGGCTGGTTCGACTGCAAGCCGTCGTGAGG
GGGTGGCTGTTGCGGCGAAAGGTTAATTGGATCCCGGCGAGAGACCTGGA
GGCTGTGCTGAAGGACCTGGACCAAAGAGACAAGGGCTTGAGAAGGTGCC
GCTGTGGAATTCCCTCGTGTCTTGGTGCTTGTGTGTGTCCACGCGTGGCC
GGTGACGTATCCTGTAATAGTCTACGGGACTGCTGTAGTTTGTTTGAGCC
CTGCAAGGGTAGGGTTTAGAGGGGACACGGGGAACGTAAGTCGAGGTTTG
TTGTCTCTCTCTGTCTCTCTGTCTGTCTCTGTGTCTCTCTCTGTCTCTCT
CTCTCTCTGGCTCAGTTTATTTCTGCCTCTCTCCCTCTCCCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGTCTCA
GTTTCTTCCTCAGTGCGTTCTCGTTCGTTCTAAATGCTGCGGTCAGTTCT
ACCCGAACCTTGTTCCTCTTGTGTACCTCTTGACCGCGTGTCGGGTCGTC
TTCGTCGTCGTCATCATCACAGGCTGGTGGCCTACCTTGTTTTCTTTCTG
CTCTTCTTCGGGATCCTCATTCTCGAGTCCGACGTCACCTTCCAGCACTC
CGTCGAGACCGGCATGAAAAAATTCATCAACCAGGTTAGGCCCGGGACCA
GCATGAGAAATAAACGCTCGTCTTGTGTGCGTACTCTACGCCTGGTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7283:1259..3105-

>mRNA_Ecto-sp13_S_contig7283.18435.1 ID=mRNA_Ecto-sp13_S_contig7283.18435.1|Name=mRNA_Ecto-sp13_S_contig7283.18435.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=471bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7283:1259..3105- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGTTCACGGGGAGACAGCCGGCGGCCGACTCGCGCAAAAGTGCTAC
TGCTACGTCGTTGCGAAGCAGTAGGCTACTACTCGGACATTACGGCGATG
GCAGCAGGAGCGTTGGAGGGAGCATGATGGGAAGCCAATCCCGGTGGGGA
TGGAGCCGGTCAGAGACCGAGCGGCTGGTTCGACTGCAAGCCGTCGTGAG
GGGGTGGCTGTTGCGGCGAAAGGTTAATTGGATCCCGGCGAGAGACCTGG
AGGCTGTGCTGAAGGACCTGGACCAAAGAGACAAGGGCTTGAGAAGGCTG
GTGGCCTACCTTGTTTTCTTTCTGCTCTTCTTCGGGATCCTCATTCTCGA
GTCCGACGTCACCTTCCAGCACTCCGTCGAGACCGGCATGAAAAAATTCA
TCAACCAGGTTAGGCCCGGGACCAGCATGAGAAATAAACGCTCGTCTTGT
GTGCGTACTCTACGCCTGGTC
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