mRNA_Ecto-sp13_S_contig7279.18432.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7279.18432.1
Unique NamemRNA_Ecto-sp13_S_contig7279.18432.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7279.18432.1 vs. uniprot
Match: A0A6H5KU38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU38_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 4.580e-43
Identity = 129/161 (80.12%), Postives = 137/161 (85.09%), Query Frame = -3 
Query:    1 ECAAWLHLTGGRAKSAQDRAERAREEASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASELEQTAPTNRRVEDATAEASAAEVKGEEDGQGTGECKSLQGPPTQDGSWPGSPFASSPSQREKSSAAAVEAEEVVAGAADQETSREAPSHDVEEAVTAK 483
            E + WL L GGRAKSAQDRAERARE   XXXXXXXXXXXXXXXXXXXXXXXXXXXX   GASELE+   T RRVEDATA+ASAAEVKGEE+GQGTGECK+LQGPPTQDGS  GSP  SSPSQ +K SAAA EAEEVVAGAADQET+REAPSH+ EE V AK
Sbjct: 1494 EASEWLFLAGGRAKSAQDRAERAREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGASELERMVLTKRRVEDATAQASAAEVKGEENGQGTGECKNLQGPPTQDGSRRGSPSVSSPSQPQKPSAAAAEAEEVVAGAADQETTREAPSHNAEETVRAK 1654
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BLAST of mRNA_Ecto-sp13_S_contig7279.18432.1 vs. uniprot
Match: D8LGD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGD3_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 1.450e-39
Identity = 88/102 (86.27%), Postives = 91/102 (89.22%), Query Frame = -3 
Query:    1 GASELEQTAPTNRRVEDATAEASAAEVKGEEDGQGTGECKSLQGPPTQDGSWPGSPFASSPSQREKSSAAAVEAEEVVAGAADQETSREAPSHDVEEAVTAK 306
            GASELEQTAPT RR EDATAEASAAEVKGEEDGQGTGE KSLQGPPTQDGS PGSPFASSPSQ EK SAA  E E+VVA AADQET+REAPSH+ EEAVTAK
Sbjct: 1604 GASELEQTAPTTRRAEDATAEASAAEVKGEEDGQGTGESKSLQGPPTQDGSRPGSPFASSPSQPEKPSAATAETEDVVARAADQETTREAPSHNAEEAVTAK 1705
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7279.18432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU38_9PHAE4.580e-4380.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGD3_ECTSI1.450e-3986.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7279contigEcto-sp13_S_contig7279:4258..4745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size488
Hectar predicted targeting categorymitochondrion
Exons1
Cds size429
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463995.8733292-UTR-Ecto-sp13_S_contig7279:4257..42891681463995.8733292-UTR-Ecto-sp13_S_contig7279:4257..4289Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7279 4258..4289 +
1681463995.900174-UTR-Ecto-sp13_S_contig7279:4718..47451681463995.900174-UTR-Ecto-sp13_S_contig7279:4718..4745Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7279 4719..4745 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463995.8829916-CDS-Ecto-sp13_S_contig7279:4289..47181681463995.8829916-CDS-Ecto-sp13_S_contig7279:4289..4718Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7279 4290..4718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7279.18432.1prot_Ecto-sp13_S_contig7279.18432.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7279 4290..4718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7279.18432.1

>prot_Ecto-sp13_S_contig7279.18432.1 ID=prot_Ecto-sp13_S_contig7279.18432.1|Name=mRNA_Ecto-sp13_S_contig7279.18432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
MVLPGWSLGRQPLRRLLRLQRRRQKISPVVMDCSQRVIQANFHLAWVAPA
SSCTRRSLGRLPPPLLQLLMLPLLRLLHADWLVPFARARTPPSLQARRQH
LNARHPLCPSGRLPGLPCLGATKRLPRGPFPRDLERTLPSRR*
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mRNA from alignment at Ecto-sp13_S_contig7279:4258..4745+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7279.18432.1 ID=mRNA_Ecto-sp13_S_contig7279.18432.1|Name=mRNA_Ecto-sp13_S_contig7279.18432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=488bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7279:4258..4745+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTCGCCGTTACGGCTTCCTCGACGTCGTGGGATGGTGCTTCCCGGCTGG
TCTCTTGGTCGGCAGCCCCTGCGACGACTTCTTCGGCTTCAACGGCGGCG
GCAGAAGATTTCTCCCGTTGTGATGGACTGCTCGCAAAGGGTGATCCAGG
CCAACTTCCATCTTGCGTGGGTGGCCCCTGCAAGCTCTTGCACTCGCCGG
TCCCTTGGCCGTCTTCCTCCCCCTTTACTTCAGCTGCTGATGCTTCCGCT
GTTGCGTCTTCTACACGCCGATTGGTTGGTGCCGTTTGCTCGAGCTCGGA
CGCCCCCCTCTCTGCAAGCCAGGCGGCAGCACCTGAACGCACGCCATCCG
CTCTGTCCTTCAGGGAGACTGCCCGGCCTCCCGTGTCTCGGAGCCACGAA
GAGGCTTCCTCGCGGGCCCTTTCCGCGCGATCTTGAGCGGACTTTGCCCT
CCCGCCGGTAAGGTGGAGCCAAGCCGCACATTCCAAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7279:4258..4745+

>mRNA_Ecto-sp13_S_contig7279.18432.1 ID=mRNA_Ecto-sp13_S_contig7279.18432.1|Name=mRNA_Ecto-sp13_S_contig7279.18432.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7279:4258..4745+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCTTCCCGGCTGGTCTCTTGGTCGGCAGCCCCTGCGACGACTTCT
TCGGCTTCAACGGCGGCGGCAGAAGATTTCTCCCGTTGTGATGGACTGCT
CGCAAAGGGTGATCCAGGCCAACTTCCATCTTGCGTGGGTGGCCCCTGCA
AGCTCTTGCACTCGCCGGTCCCTTGGCCGTCTTCCTCCCCCTTTACTTCA
GCTGCTGATGCTTCCGCTGTTGCGTCTTCTACACGCCGATTGGTTGGTGC
CGTTTGCTCGAGCTCGGACGCCCCCCTCTCTGCAAGCCAGGCGGCAGCAC
CTGAACGCACGCCATCCGCTCTGTCCTTCAGGGAGACTGCCCGGCCTCCC
GTGTCTCGGAGCCACGAAGAGGCTTCCTCGCGGGCCCTTTCCGCGCGATC
TTGAGCGGACTTTGCCCTCCCGCCGGTAA
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