mRNA_Ecto-sp13_S_contig7276.18427.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7276.18427.1
Unique NamemRNA_Ecto-sp13_S_contig7276.18427.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7276.18427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7276contigEcto-sp13_S_contig7276:591..949 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size359
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_001160.1
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463995.577885-UTR-Ecto-sp13_S_contig7276:590..6301681463995.577885-UTR-Ecto-sp13_S_contig7276:590..630Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7276 591..630 +
1681463995.6015816-UTR-Ecto-sp13_S_contig7276:819..9491681463995.6015816-UTR-Ecto-sp13_S_contig7276:819..949Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7276 820..949 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463995.5899777-CDS-Ecto-sp13_S_contig7276:630..8191681463995.5899777-CDS-Ecto-sp13_S_contig7276:630..819Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7276 631..819 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7276.18427.1prot_Ecto-sp13_S_contig7276.18427.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7276 631..819 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7276.18427.1

>prot_Ecto-sp13_S_contig7276.18427.1 ID=prot_Ecto-sp13_S_contig7276.18427.1|Name=mRNA_Ecto-sp13_S_contig7276.18427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MCAPCFGPMILEKNCLNCHLCSFSFQFCSQFGQICSTIDQNCDWLFFVLF
LTLERSGEMPLE*
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mRNA from alignment at Ecto-sp13_S_contig7276:591..949+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7276.18427.1 ID=mRNA_Ecto-sp13_S_contig7276.18427.1|Name=mRNA_Ecto-sp13_S_contig7276.18427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=359bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7276:591..949+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTCCCGAAAAATAGGGCTCCCCGTTTTAGGCAAAAGAATGTGTGCTC
CTTGTTTTGGGCCCATGATACTCGAAAAAAACTGCCTAAACTGCCATTTG
TGCTCGTTTTCCTTCCAATTTTGCTCTCAATTCGGTCAAATATGCTCGAC
TATTGACCAAAATTGCGACTGGCTTTTTTTTGTGCTTTTTTTGACGCTCG
AGCGTAGTGGGGAAATGCCTCTTGAGTAGAGTCTGTTGCCGTTAACCCCT
TTGGTGAAGGAGTTCTTCCATGTCATTCCTTGTGTTAAGACTGCGGCTAG
CTTCTAAACCCTGCTCGCTTCCACACCCTGCGCTCTCTCGGTTATGGCAT
TTCGACGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7276:591..949+

>mRNA_Ecto-sp13_S_contig7276.18427.1 ID=mRNA_Ecto-sp13_S_contig7276.18427.1|Name=mRNA_Ecto-sp13_S_contig7276.18427.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7276:591..949+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGTGCTCCTTGTTTTGGGCCCATGATACTCGAAAAAAACTGCCTAAA
CTGCCATTTGTGCTCGTTTTCCTTCCAATTTTGCTCTCAATTCGGTCAAA
TATGCTCGACTATTGACCAAAATTGCGACTGGCTTTTTTTTGTGCTTTTT
TTGACGCTCGAGCGTAGTGGGGAAATGCCTCTTGAGTAG
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