mRNA_Ecto-sp13_S_contig7274.18422.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7274.18422.1
Unique NamemRNA_Ecto-sp13_S_contig7274.18422.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig7274.18422.1 vs. uniprot
Match: D7FP08_ECTSI (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP08_ECTSI)

HSP 1 Score: 459 bits (1180), Expect = 7.030e-160
Identity = 231/236 (97.88%), Postives = 232/236 (98.31%), Query Frame = 1
Query:    7 VRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRHKAHLQRAGLLGEEEDEVPANLWGNPVEASMMGMPSMAAGTPTSLASRAKSRSPGGAKGGLGGLGHDLSPAIMPPEQFYTLAVPVPPDNAGDPPAENPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLVSVAEKARSTGNAAAAVTVS 714
            VRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRHKAHLQRAGLLGEEEDEVPANLWGNPVEASMMGMPSMAAGTPTS ASRAKSRSPGGAKGGLGGLGHDLSPAIMPPEQFYTLAVPVPPD+AGDPPAENPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLVSVAEKARSTGNA AAV  S
Sbjct:  159 VRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRHKAHLQRAGLLGEEEDEVPANLWGNPVEASMMGMPSMAAGTPTSSASRAKSRSPGGAKGGLGGLGHDLSPAIMPPEQFYTLAVPVPPDSAGDPPAENPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLVSVAEKARSTGNATAAVAAS 394          
BLAST of mRNA_Ecto-sp13_S_contig7274.18422.1 vs. uniprot
Match: A0A4D9CT44_9STRA (C-CAP/cofactor C-like domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CT44_9STRA)

HSP 1 Score: 149 bits (375), Expect = 4.370e-37
Identity = 97/242 (40.08%), Postives = 130/242 (53.72%), Query Frame = 1
Query:    7 VRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRHKAHLQRAGLLGEEEDEVPANLWGNPVEASMMGMPSMAAGTPTSLASRAKSRSPG------GAKGGLGGLGHDLSPA---IMPPEQFYTLAVPVPPDNA------------GDPPA--ENPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLVSV 663
            VRV  CER+ LV   RRL V N L+  FPV++  P VL GDNR C+ APYN+CYP     L+ AG  GE     P N W +P++ +  G  + A G    L    +    G      G   GL G     +     I+PPEQFYTL++PVPP ++            G PP    NPF LP EYA+VL+ER   ++ L Q ++ + L+  Q   +E  +  +F EWL A+GNLRQVLDL+ +
Sbjct:  601 VRVSNCERLTLVCAARRLVVCNCLDSTFPVYLLRPAVLVGDNRGCRLAPYNTCYPSLPLDLRTAGF-GELGSTQPRNQWDSPIDLTA-GAHNGAGGGEGGLGLTREGSHGGKGDRDNGRNAGLAGQEGARAGGESRILPPEQFYTLSIPVPPSSSPGLPGQGPMPPEGSPPTLLYNPFPLPPEYASVLRERSVGLDRLQQTVIGS-LSDEQRPGVEAALVSKFYEWLAASGNLRQVLDLIQL 839          
BLAST of mRNA_Ecto-sp13_S_contig7274.18422.1 vs. uniprot
Match: A0A835Z1R1_9STRA (Tubulin binding cofactor C-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1R1_9STRA)

HSP 1 Score: 141 bits (356), Expect = 9.980e-35
Identity = 91/247 (36.84%), Postives = 125/247 (50.61%), Query Frame = 1
Query:    7 VRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRHKAHLQRAGLL-----------GEEEDEVPANLWGNPVEASMMGMPSMAAGTPTSLASRAKSRSPGGA-KGGLGGLGHDLSPAIMPPEQFYTLAVPVPPDNAGDPP------------------AENPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLV 657
            VR+E+C R+ L+  CRR    N  EC   ++  + P+  GDNRACQ APYN+ YPR +AHL   GLL                    N+W +P++ +               A   ++ +  GA +     L    +   MPP+ F+ +++P      GD                    A NPF LP EYA  L+EREA ++ L Q +  A L+PRQ RELEE +RGRFTEWLV++G+LRQVLDLV
Sbjct:  406 VRLEDCTRVTLIAACRRACAVNCCECALHLYAPSRPLFVGDNRACQVAPYNAAYPRLRAHLAACGLLPPLPXXXXXXXXXXXXXXXRNMWFSPLDLNAAPTVXXXXXXXXXXALTPRTAAKAGADEAHPHALASASAVTQMPPDAFHCVSIPA--CAGGDEXXXXXXXXXXXXXXREATQALNPFPLPPEYANKLREREALLQQLQQVVQGAQLSPRQQRELEEAVRGRFTEWLVSSGHLRQVLDLV 650          
BLAST of mRNA_Ecto-sp13_S_contig7274.18422.1 vs. uniprot
Match: A0A7S3BWF8_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BWF8_9VIRI)

HSP 1 Score: 115 bits (287), Expect = 4.430e-26
Identity = 77/224 (34.38%), Postives = 106/224 (47.32%), Query Frame = 1
Query:   10 RVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRHKAHLQRAGLLGEEEDEVPANLWGNPVEASMMGMPSMAAGTPTSLASRAKSRSPGGAKGGLGGLGHDLSPAIMPPEQFYTLAVPVPPDNAGDPPAE---------NPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDL 654
            R+E CER QL+ CCRRL V+N  +C   +   TPPV  GDNR    AP+N+ YP  +AHL+  G+      +   N W         G           + +      PG A+  +           MPP +F    VPV  +  G   A          NPF LP EYAA L+ +  +V  L  A+ DA L+  + REL+  I+  F +WL+ +GN+RQV DL
Sbjct:  206 RLERCERTQLLVCCRRLVVSNCHDCTLYLATNTPPVFVGDNRNVVVAPFNTYYPSLRAHLEAVGV------DPSVNRWDTVALLEEEG---------ELVRAEVGHAGPGAAQAAV---------HAMPPNKFVPFIVPVVENGPGGAAANADASTQTHTNPFVLPPEYAAALEAKVRSVAQLRGAVKDAALSDARRRELQGVIQAHFKDWLLHSGNMRQVFDL 405          
BLAST of mRNA_Ecto-sp13_S_contig7274.18422.1 vs. uniprot
Match: A0A7S0NAY6_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0NAY6_9CHLO)

HSP 1 Score: 106 bits (264), Expect = 9.520e-24
Identity = 74/222 (33.33%), Postives = 113/222 (50.90%), Query Frame = 1
Query:    7 VRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRHKAHLQRAGLLGEEEDEVPANLWGNPVEASMMGMPSMAAGTPTSLASRAKSRSPGGAKGGLGGLGHDLSPAIMPPEQFYTLAVP---VPP---DNAGDPPAENPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDL 654
            ++V+ CER+ LV+  RRL V++  +  F + V  PPV+ GD R  Q APYN+ Y R  AHL+ A +          N W  PV  +      +   T +S ++   + SP  A   +         A++PPE+F    +P    PP   D        NPF +P +Y+A L+++  AVE + + + +A L     R+L+  I+  F EWLV +GN+RQV DL
Sbjct:   65 LKVDLCERVHLVSASRRLRVSSCRDSTFCIAVNHPPVVMGDCRNLQLAPYNTYYERLDAHLRVANV------RTAPNRWDAPVSLTSK----LHTDTSSSPSTSNPTSSPDSASRVV---------ALLPPEKFLPFMIPFRGAPPSAEDQLRPSTTANPFTMPQQYSAALEQKVQAVEDMRKNVKEAGLDGANKRDLQTVIQAYFKEWLVVSGNMRQVYDL 267          
BLAST of mRNA_Ecto-sp13_S_contig7274.18422.1 vs. uniprot
Match: A0A8K1Y6G7_9CHLO (Probable TBCC domain-containing protein 1 at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8K1Y6G7_9CHLO)

HSP 1 Score: 110 bits (274), Expect = 1.090e-23
Identity = 85/263 (32.32%), Postives = 123/263 (46.77%), Query Frame = 1
Query:    7 VRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRHKAHLQRAGLLGEEEDEVPANLWGNPVEASMMGMPSMA-AGTPTSLASRAK------------------SRSPGGAKGGLGGLGHDLSPAIMPPEQFYTLAVPVPPDNAGDPPAENPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLVSVAEKARSTGNAAAAVTVSALAEQATT 738
            ++VE CER+QLV    RL++ +  +C+F + V  PP+L GDNR  Q APYN+ Y R   H+ +AG+  E       NLW  PV       P+   + T TS A +A+                     PG   GG    G     A +    F  LA          P A +PF LP+ Y    + + +AV  L  A+  A L   + REL+  I+  F +WL+ +GN+RQV DL  +  +  STG  AA    ++++  A T
Sbjct:  419 LKVERCERVQLVASAVRLSIASCHDCVFYLGVNRPPLLLGDNRFLQMAPYNTQYERLPVHMAKAGVTAEP------NLWDRPVSLGREHRPATPDSDTATSAAGKARMPFTLLPPDKLLPLMVPFKGGPGPLCGGAASGGGSRMSADV--GSFVGLAESG--GGGSGPLAPSPFRLPAVYEEAKERKVSAVSDLRNAVKAAALDDAKKRELQAVIQSYFKDWLMTSGNMRQVYDLARMEREEASTGTPAAQENSNSMSADAPT 671          
BLAST of mRNA_Ecto-sp13_S_contig7274.18422.1 vs. uniprot
Match: A0A448ZKV8_9STRA (TBCC domain-containing protein 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZKV8_9STRA)

HSP 1 Score: 108 bits (271), Expect = 2.950e-23
Identity = 87/275 (31.64%), Postives = 126/275 (45.82%), Query Frame = 1
Query:    7 VRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRHKAHLQRAGLLG-----------------EEEDEVP-----ANLWGNPVEASMMGMPSMAA------GTPTSLASRAKSRSPGGAKGGLGGLGHDLSPAIMPPEQFYTLAVPVPPDNA----------------GDPPAE--------------NPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLV 657
            V V +CER ++ T  RR+ ++NS + I  VF  TPP+L GDNR+CQFAPYN+ Y   +  L   GL                   E E   P     +N W  PVE S + +P +A       G+P++       R+P    G +G      +P ++P  +F+ L VP+  ++A                G+ P+               +PF LP EY      +   +  + QAI  +    +Q +  EE  RG F +WLVA+GNLRQVLDLV
Sbjct:  521 VHVVDCERTKVTTASRRILLSNSCDTIMNVFTPTPPLLVGDNRSCQFAPYNTYYEGLREDLLATGLAAAAVPADNQSQFHGSRSLENEGAWPPLQCASNKWKQPVEISKLEIPQVAGSNSPPPGSPSNSVGADDKRAPNSNAGTIGDTSVQ-TPILLPASEFHVLFVPIESESARQRRSEQESHEAGGGTGEQPSNESKYCRALAEVLQFSPFRLPIEYERRALVKADRMRNIQQAIRKSVPEDKQKQFEEELNRG-FRDWLVASGNLRQVLDLV 793          
BLAST of mRNA_Ecto-sp13_S_contig7274.18422.1 vs. uniprot
Match: A0A061S8L0_9CHLO (TBCC domain-containing protein 1 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061S8L0_9CHLO)

HSP 1 Score: 103 bits (256), Expect = 2.430e-21
Identity = 81/236 (34.32%), Postives = 109/236 (46.19%), Query Frame = 1
Query:    7 VRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRHKAHLQRAGLLGEEEDEVPANLWGNPVEAS--MMGM-------PSMAAG---TPTSLASRAKSRSPGGA--------KGGLGGLGHDLSPAIMPPEQFYTLAVPVPPDNAGDPPAENPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDL 654
            VR+E CE++QL   CRR  ++   +C   + V  PP L GDNR  Q APY + Y    AHL  AG+         AN+W +P+  +  M G        P+MA G   T  S+     SR P           KGG G LG   + A   P    T  +             N F LP EY A L+++  AV  L   +  A L   + R+L+  I+  F EWLVA+GN+RQ+ DL
Sbjct:  369 VRIERCEKLQLFVACRRAMISTCHDCTXHLAVNRPPCLIGDNRFIQLAPYCTHYEELPAHLNAAGVT------TGANMWDHPIXVTRDMRGHAPDSPRGPAMATGPHSTSDSMLINQWSRMPPRKLLPFVIPFKGGKGPLGGGGAXAPGTPSTGNTAGL------------GNLFPLPEEYDAALKKKVEAVADLRSEVKSAVLEEPRKRDLQAVIQAHFKEWLVASGNMRQIYDL 586          
BLAST of mRNA_Ecto-sp13_S_contig7274.18422.1 vs. uniprot
Match: I0Z7X8_COCSC (TBCC domain-containing protein 1 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z7X8_COCSC)

HSP 1 Score: 102 bits (253), Expect = 5.870e-21
Identity = 76/235 (32.34%), Postives = 109/235 (46.38%), Query Frame = 1
Query:    7 VRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRHKAHLQRAGLLGEEEDEVPANLWGNPVEASMMGMPSMA-AGTPTSLASRAK------------------SRSPGGAKGGLGGLGHDLSPAIMPPEQFYTLAVPVPPDNAGDPPAENPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDL 654
            ++VE CER+QLV    RL++ +  +C+F + V  PP+L GDNR  Q APYN+ Y R   H+ +AG+  E       NLW  PV       P+   + + TS A +A+                     PG   GG    G     A +    F  L           P A +PF LP+ Y    + + +AV  L  A+  A L   + REL+  I+  F +WL+ +GN+RQV DL
Sbjct:  318 LKVERCERVQLVASAVRLSIASCHDCVFYLGVNRPPLLLGDNRFLQMAPYNTQYERLPVHMAKAGVTAEP------NLWDRPVSLGREHRPATPDSDSATSAAGKARMPFTLLPPDKLLPLMVPFKGGPGPLCGGAASSGGSRMSADV--GSFVGLGDSG--QGGSGPLAPSPFRLPAVYEEAKERKVSAVSDLRNAVKAASLDDGKKRELQAVIQSYFKDWLMTSGNMRQVYDL 542          
BLAST of mRNA_Ecto-sp13_S_contig7274.18422.1 vs. uniprot
Match: B7GDS5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GDS5_PHATC)

HSP 1 Score: 99.4 bits (246), Expect = 5.990e-20
Identity = 83/273 (30.40%), Postives = 124/273 (45.42%), Query Frame = 1
Query:   13 VEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFAPYNSCYPRHKAHLQRAGLLGE--EEDEVP----------------------ANLWGNPVEASMMGMPSMAAGTP----TSLASRAKSRSPGGAKGGLGGLGHDLS---PAIMPPEQFYTLAVPVPPD---------NAGDPPAE------------------NPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRGRFTEWLVATGNLRQVLDLV 657
            + +CE+  + +  RRL V+NS +    VF  +PP+L GDNR+CQFAPYN+ Y   +  L   GL      E + P                      +N W +PVE + + MP +    P    TS+   A + +   A G   G G+D S   P ++P  +F+ L VP+  D         +  D  +E                  +PF LP EY   +  +   ++ + Q+ V  +LT  Q  + EE +   F +WLV +GNLRQVLDLV
Sbjct:  527 IVDCEKTSITSAARRLLVSNSSDVQMCVFTPSPPLLVGDNRSCQFAPYNTYYDGFREDLLATGLAAAVVPEHQSPYHGSGGRNYTDTDGSWPPLQCASNKWKHPVELARLEMPQIPPTPPGPSNTSIGGVASAGADDKAMG-KSGTGNDTSVHAPVLVPASEFHILFVPIESDASKQRRLEADENDHSSEPGRLESQYCRLLSELLQTSPFRLPMEYERRVLMKVDRMKTIQQS-VQKNLTTEQQAKFEEELNRGFRDWLVTSGNLRQVLDLV 797          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7274.18422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP08_ECTSI7.030e-16097.88C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A4D9CT44_9STRA4.370e-3740.08C-CAP/cofactor C-like domain-containing protein n=... [more]
A0A835Z1R1_9STRA9.980e-3536.84Tubulin binding cofactor C-domain-containing prote... [more]
A0A7S3BWF8_9VIRI4.430e-2634.38Hypothetical protein n=1 Tax=Prasinoderma singular... [more]
A0A7S0NAY6_9CHLO9.520e-2433.33Hypothetical protein n=1 Tax=Pyramimonas obovata T... [more]
A0A8K1Y6G7_9CHLO1.090e-2332.32Probable TBCC domain-containing protein 1 at C-ter... [more]
A0A448ZKV8_9STRA2.950e-2331.64TBCC domain-containing protein 1 n=1 Tax=Pseudo-ni... [more]
A0A061S8L0_9CHLO2.430e-2134.32TBCC domain-containing protein 1 n=1 Tax=Tetraselm... [more]
I0Z7X8_COCSC5.870e-2132.34TBCC domain-containing protein 1 n=1 Tax=Coccomyxa... [more]
B7GDS5_PHATC5.990e-2030.40Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7274contigEcto-sp13_S_contig7274:3619..7567 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score463.8
Seed ortholog evalue5.4e-128
Seed eggNOG ortholog2880.D7FP08
Preferred nameTBCCD1
Model size780
KEGG koko:K16810
Hectar predicted targeting categoryother localisation
GOsGO:0000922,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0008150,GO:0008360,GO:0009987,GO:0015630,GO:0022603,GO:0022604,GO:0030334,GO:0031616,GO:0032879,GO:0040012,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051235,GO:0051270,GO:0051640,GO:0051641,GO:0051642,GO:0051645,GO:0051651,GO:0051657,GO:0051661,GO:0051684,GO:0061842,GO:0065007,GO:0065008,GO:2000145
Exons6
EggNOG free text desc.maintenance of Golgi location
EggNOG OGsKOG4416@1,KOG4416@2759
Cds size780
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7274.18422.1prot_Ecto-sp13_S_contig7274.18422.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7274 3619..7567 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463995.2493644-CDS-Ecto-sp13_S_contig7274:3618..37891681463995.2493644-CDS-Ecto-sp13_S_contig7274:3618..3789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7274 3619..3789 -
1681463995.2732499-CDS-Ecto-sp13_S_contig7274:4032..41321681463995.2732499-CDS-Ecto-sp13_S_contig7274:4032..4132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7274 4033..4132 -
1681463995.2827795-CDS-Ecto-sp13_S_contig7274:4923..50271681463995.2827795-CDS-Ecto-sp13_S_contig7274:4923..5027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7274 4924..5027 -
1681463995.2921355-CDS-Ecto-sp13_S_contig7274:5663..57761681463995.2921355-CDS-Ecto-sp13_S_contig7274:5663..5776Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7274 5664..5776 -
1681463995.3032148-CDS-Ecto-sp13_S_contig7274:6962..70741681463995.3032148-CDS-Ecto-sp13_S_contig7274:6962..7074Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7274 6963..7074 -
1681463995.3150926-CDS-Ecto-sp13_S_contig7274:7387..75671681463995.3150926-CDS-Ecto-sp13_S_contig7274:7387..7567Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7274 7388..7567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7274.18422.1

>prot_Ecto-sp13_S_contig7274.18422.1 ID=prot_Ecto-sp13_S_contig7274.18422.1|Name=mRNA_Ecto-sp13_S_contig7274.18422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=260bp
MQVRVEECERMQLVTCCRRLTVTNSLECIFPVFVATPPVLCGDNRACQFA
PYNSCYPRHKAHLQRAGLLGEEEDEVPANLWGNPVEASMMGMPSMAAGTP
TSLASRAKSRSPGGAKGGLGGLGHDLSPAIMPPEQFYTLAVPVPPDNAGD
PPAENPFGLPSEYAAVLQEREAAVEGLHQAIVDADLTPRQNRELEECIRG
RFTEWLVATGNLRQVLDLVSVAEKARSTGNAAAAVTVSALAEQATTPTKA
QQQQQQQPR*
back to top

mRNA from alignment at Ecto-sp13_S_contig7274:3619..7567-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7274.18422.1 ID=mRNA_Ecto-sp13_S_contig7274.18422.1|Name=mRNA_Ecto-sp13_S_contig7274.18422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3949bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7274:3619..7567- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGTTCGAGTGGAGGAGTGCGAGCGCATGCAGCTGGTGACCTGCTG CCGCCGTCTCACGGTGACGAACTCCCTCGAGTGCATATTCCCGGTCTTCG TCGCCACGCCGCCGGTGCTCTGCGGGGACAACCGAGCTTGCCAGTTCGCC CCCTACAACTCGTGCTACCCGAGACACAAGGTAAGGCGGCGGCGGGGGCG GAGGCGACGGTGGGTGGGAGATAGTTCTGTATTTAGTCCCCCACCATTTT TTTCCTTTTTTTGGAAGAAATGATGGCGGGTAGCGGATTCGAACCCGGGT TTTCGTCGACGCCAATGTGAAAAGAGGGTATCGTCCTCGACAGATGTAGG AAGAGTGTATGTACCCTTTTTCGAACAGAATCTCCTCATTTTTGGGGCCT GCAGTCGGATTCGGGTCCGGTAGCGATTTTTGCTGTTTCGTGATTTTTTA TACCGCACATACACCCCCACCCTGTACCCCCTGGCTCTGCCAGGCTCACC TGCAGCGCGCCGGTCTGTTGGGAGAGGAGGAAGACGAAGTTCCGGCCAAC CTGTGGGGAAACCCTGTGGAGGCGTCGATGATGGGCATGCCTTCCATGGC TGCAGGTTCGGCTGTATATCTGGCTATTTTTTCGTGTACTGAATAGATGC AATACCGCAAGAGGAAACATTCTCGGACGAAGAGAAGGTCCCTGTGTGAC TTCGTGACCCCGGCTCAAACTTCATGATTCACGGAGATGTGAGTCGACCG GCCGCAGAAGAAAAGGGATGAACACGACACAGACATCGGGTTCCTGTGGT TGGCATGACGTAGGATAAGACGCCCCCTTGGACTGACCGATCTCTCCAAA GGTCGATTACTCGCAGCGGAACAGAGTGGCGGTGCCGAGGAGTTGAGTCG TTAGAACCCTCATCGCCTCGTCGAGGGCTTTCTTTTTTGTGCATGCCTTG GTGTATTGACATGTTCTCTCCGTCGTGGAAGTAGTCGAACTTCGGAAATT GGTCCACCGGGTGTGGTATCTTGCGCCATGCCACCTACGGGCACACGCTT GGATGCTTGCAGGCGAACGGCCGCAGGTTCTTGGCTCAGTTCACCCGCAT GAGTGTGTTGGTTACAAATAAGCATATGTTACTGCGCTACATGCGGAGTG AGATGGAGCGCCCGGATCTCTGCGATGCGAGGAGCAAAATTGCTGGTGGT CGGCGGTGGTGATTGATCTTGGAAGCTCGTTGGATTCCGCCCCGCGTGTT CCTTGCGCTCCTGTGTGCCGCAACACATGTTCTTGCTTTGCCGCAAAGGG GGATGGCCACCTTACCCTGCACCCTTTTCTCGCCGAGGATGGGTGTTTGC GGGCAACATGGACGTACAAACCGACCCTCCCCCACCCCCCCCCCTGACGG AAACATGGCGCTTGGTACTGTTATCGTTGTTGTTGTTGTTGTTATCGTTG TTTTTGTAGTAGTAGTAGTTGTTGTTGTTGCTGCTGCTGCTGCTGCTGCT GCTGCTGCGGTCGACATCAGTGTGGCGACTGTTCGCATCATCTCTTTTTT TTCTTCTTCTTCGAAAAAGACACGCTACCAATTCATTTCTTCCACGGCTC ACAGAGTCCGGTCGGCATAGATCAGCTATTCCCGAAACCGTTTTTGTTTG TGTGTCACGCGACGAATCCACATCTATGCAGCGATAAGCGTCCAAGATAT CTTAGCAATGAACCCACACATGATGAACAGTATTTCCGGAAAACATTTCT GTTGTTTGTTCGTTGCCGTTGCAATCGTTCGTTGCCACCAGGCACGCCAA CATCGTTAGCCTCGAGGGCGAAAAGCAGGTCACCCGGCGGCGCGAAGGGC GGCTTGGGAGGTTTGGGTCACGACCTGTCCCCGGCAATAATGCCACCCGA ACAGGTGATTGGTCGAAGACAAGACATAACGCCTTTCGAAGTTTCCCGCC ACGCTCAACTTTAATTTCCTGACTAAAGAGAAAAAATCTTCGGACGACAT TTCAATATACAACTGATGAAACATAAAGTGAGAAACAAAAAATGACATAT TTTTTTTGTTTTTTCCCAGGCGAACGGAGAGGTTTTTTGTTCCTCTGCAA TTTTTCCGATTTTGACGTTTGGCACTTCATTGTCACAGGGCCTGGCTGGT TGTTCGGGTGTTGTTTGCTTTTGTTTTTTGTGTGATTGCTGGGGTAATTG TTTCGGCTGTCTTTGCGTGCGTACTGTACATACCTCCCGACGCTCTCTTT CGCTCGCTGGAGAAGTGGGGTGATTGTTTGGTTGATGCTTGGGGTATGCT ATCCAAAGGTCGGTTGCTTTTTCTATGAATGCTCTTCGGTTGGCTGGTGC GTACACACCCGCCTCTCTTTCTCTCGCTTGAGAATGGGGAGGGGTCCTGT TGATGAGGAGGGCGCCTATACGTGCGACGGAGATGGAGTTCGAGAGTATG TACGCTCTGACGCTCTGATGGTGCGAGCTCTTTTATTTCTCTGATCGTTC CGTCTTGCCCCCTATCCCCCTTTTCCTGGCTGCGTGACAGTTCTACACGC TGGCGGTGCCGGTTCCCCCAGACAACGCGGGGGACCCCCCGGCGGAAAAC CCGTTTGGACTGCCCTCCGAGTACGCCGCTGTCCTGCAAGAGAGGTGCGA CGACAGACCTTGCTATTCTCTTGGTGAACAGCAGCAGCAGCAGCAGCAGC GTTGGCGCACAATGAAATATATATGCACACGTGAAGTTGTTCTGTAGCCG AACAGCAGCATCCGCAAGGAGCAGCGCTATTGCACAATTACTAACGTGTG TATGTATGTGAAATGGTTCTCTGGCCGAACAGCAACTGAACAGCAGCAGC AGCAGCAGTGTTGTTCCACAACAAAATACACACTCCATTCATCTAAAGAC CTCAACACCTCCCGTCGACTGGGGTCTAATATCGAACGTGTGTTGTAGTC TTTTCAGCAGCGATGGTCGTGTTGGATTTTTTTTTGTCAAGAAACAATTT TAGTTCGTGCTGCTGATGTCATGCGGGGTGAGTGCTGTGAAATCGATTCT TGTCGCCCGTGGGTTGGGTCTCAGGGCAGGAACAGCGCTTGCCTGGCGGC ACCGCAGCATCATTTTTTCTTACCGGCCCTACATACCCGAGTATACACTA CAATCAAGAACCTTGAGCACGATTTGTGATCCCGGTTGGGAATCCTACAC TAAATCCTATGCACCGGCCGTTTGTAGGCCACGAGGGGAACTACTGTAAG AAGACCAGCCTCCGTCAACTAGAGCTTCTTTAGTGCGGACGCTATCCGTA TATCAAGTCACGCCGAGCTCTTGCCTGACGCCCCGTCGGCCCATTACATA CCCCGAGATCCCTCCGGTGTTGAGCGGTATTTTCATGCGCGAGGCATGCA CCCCTCCCCATTTCCGCCTCCCTTGGAACGCCCAGGGAAGCGGCCGTGGA GGGCTTGCACCAGGCCATCGTCGACGCGGATCTGACGCCCAGACAGAACC GAGAGCTGGAAGAATGCATCCGTGGGCGCTTTACGGTGGGTTTTTCGCAT GTTTGGGTTATAGTGGTAGGATTAGGTTGTGTGTTTCTGTTATCGCAAGC ATGAACTTCGAAAACCGCCAAAAAATGTGTTGTGATTGTAAGCGCGGTGC GAGGAACGGTCCTCATTTCTCCAAATGGGAAAATGTGATCATTCTTCACC CTTACTTCGGCGAACATCGAATGCCCGTCCTCAACCTACCCACGTCCCCC GTCGTGGACGTTTGCGGTTGCCCGTTAGGAATGGCTGGTGGCGACGGGGA ATCTTCGACAAGTGCTGGACCTTGTGAGCGTCGCGGAGAAAGCGCGAAGC ACAGGCAACGCCGCCGCAGCCGTCACCGTCTCCGCCTTAGCGGAGCAAGC GACCACTCCCACGAAGGCACAGCAGCAGCAACAGCAGCAGCCACGATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7274:3619..7567-

>mRNA_Ecto-sp13_S_contig7274.18422.1 ID=mRNA_Ecto-sp13_S_contig7274.18422.1|Name=mRNA_Ecto-sp13_S_contig7274.18422.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=780bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7274:3619..7567- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGTTCGAGTGGAGGAGTGCGAGCGCATGCAGCTGGTGACCTGCTG
CCGCCGTCTCACGGTGACGAACTCCCTCGAGTGCATATTCCCGGTCTTCG
TCGCCACGCCGCCGGTGCTCTGCGGGGACAACCGAGCTTGCCAGTTCGCC
CCCTACAACTCGTGCTACCCGAGACACAAGGCTCACCTGCAGCGCGCCGG
TCTGTTGGGAGAGGAGGAAGACGAAGTTCCGGCCAACCTGTGGGGAAACC
CTGTGGAGGCGTCGATGATGGGCATGCCTTCCATGGCTGCAGGCACGCCA
ACATCGTTAGCCTCGAGGGCGAAAAGCAGGTCACCCGGCGGCGCGAAGGG
CGGCTTGGGAGGTTTGGGTCACGACCTGTCCCCGGCAATAATGCCACCCG
AACAGTTCTACACGCTGGCGGTGCCGGTTCCCCCAGACAACGCGGGGGAC
CCCCCGGCGGAAAACCCGTTTGGACTGCCCTCCGAGTACGCCGCTGTCCT
GCAAGAGAGGGAAGCGGCCGTGGAGGGCTTGCACCAGGCCATCGTCGACG
CGGATCTGACGCCCAGACAGAACCGAGAGCTGGAAGAATGCATCCGTGGG
CGCTTTACGGAATGGCTGGTGGCGACGGGGAATCTTCGACAAGTGCTGGA
CCTTGTGAGCGTCGCGGAGAAAGCGCGAAGCACAGGCAACGCCGCCGCAG
CCGTCACCGTCTCCGCCTTAGCGGAGCAAGCGACCACTCCCACGAAGGCA
CAGCAGCAGCAACAGCAGCAGCCACGATAA
back to top