mRNA_Ecto-sp13_S_contig72712.18419.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72712.18419.1
Unique NamemRNA_Ecto-sp13_S_contig72712.18419.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72712.18419.1 vs. uniprot
Match: A0A6H5KZM5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZM5_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.580e-16
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 108
            KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT
Sbjct:  130 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 165
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72712.18419.1 vs. uniprot
Match: A0A6H5JF66_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF66_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.330e-16
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 108
            KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT
Sbjct:  267 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 302
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72712.18419.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.890e-16
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 108
            KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT
Sbjct:   78 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 113
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72712.18419.1 vs. uniprot
Match: A0A6H5J8P7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8P7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.290e-16
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 108
            KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT
Sbjct:  278 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 313
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72712.18419.1 vs. uniprot
Match: A0A6H5K9Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y0_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.290e-16
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 108
            KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT
Sbjct:  270 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 305
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72712.18419.1 vs. uniprot
Match: A0A6H5JKH7_9PHAE (gag_pre-integrs domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH7_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.300e-16
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 108
            KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT
Sbjct:  127 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 162
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72712.18419.1 vs. uniprot
Match: A0A6H5KMG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMG5_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.300e-16
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 108
            KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT
Sbjct:   60 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 95
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72712.18419.1 vs. uniprot
Match: A0A6H5L580_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L580_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.300e-16
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 108
            KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT
Sbjct:  285 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 320
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72712.18419.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.310e-16
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 108
            KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT
Sbjct:  106 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 141
[Close]
BLAST of mRNA_Ecto-sp13_S_contig72712.18419.1 vs. uniprot
Match: A0A6H5LLS9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLS9_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 5.750e-16
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDT 108
            KKTKPAG TKWCSKHNTTSHSDEECYQQGGKRPEDT
Sbjct:  153 KKTKPAGGTKWCSKHNTTSHSDEECYQQGGKRPEDT 188
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72712.18419.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZM5_9PHAE1.580e-16100.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JF66_9PHAE2.330e-16100.00CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KP59_9PHAE2.890e-16100.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J8P7_9PHAE3.290e-16100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9Y0_9PHAE3.290e-16100.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JKH7_9PHAE3.300e-16100.00gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A6H5KMG5_9PHAE3.300e-16100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L580_9PHAE3.300e-16100.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KVF6_9PHAE3.310e-16100.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5LLS9_9PHAE5.750e-1697.22CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72712contigEcto-sp13_S_contig72712:404..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size123
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size123
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463995.099002-CDS-Ecto-sp13_S_contig72712:403..5261681463995.099002-CDS-Ecto-sp13_S_contig72712:403..526Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72712 404..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72712.18419.1prot_Ecto-sp13_S_contig72712.18419.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72712 404..526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72712.18419.1

>prot_Ecto-sp13_S_contig72712.18419.1 ID=prot_Ecto-sp13_S_contig72712.18419.1|Name=mRNA_Ecto-sp13_S_contig72712.18419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=41bp
KKTKPAGATKWCSKHNTTSHSDEECYQQGGKRPEDTQGLK*
back to top

mRNA from alignment at Ecto-sp13_S_contig72712:404..526-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72712.18419.1 ID=mRNA_Ecto-sp13_S_contig72712.18419.1|Name=mRNA_Ecto-sp13_S_contig72712.18419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72712:404..526- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAAAACGAAGCCCGCCGGAGCTACCAAGTGGTGCTCCAAGCACAACAC
CACGTCTCACTCGGACGAGGAATGCTACCAGCAGGGAGGAAAGCGCCCGG
AAGACACCCAAGGACTCAAGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72712:404..526-

>mRNA_Ecto-sp13_S_contig72712.18419.1 ID=mRNA_Ecto-sp13_S_contig72712.18419.1|Name=mRNA_Ecto-sp13_S_contig72712.18419.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72712:404..526- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGAAAACGAAGCCCGCCGGAGCTACCAAGTGGTGCTCCAAGCACAACAC
CACGTCTCACTCGGACGAGGAATGCTACCAGCAGGGAGGAAAGCGCCCGG
AAGACACCCAAGGACTCAAGTAA
back to top