mRNA_Ecto-sp13_S_contig7271.18417.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7271.18417.1
Unique NamemRNA_Ecto-sp13_S_contig7271.18417.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7271.18417.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7271contigEcto-sp13_S_contig7271:3583..6580 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size220
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionPutative LRR domain-encoding regions on the opposite strand of gene Ec-21_005740.1
Ec32 orthologEc-21_005740.3
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.9946444-CDS-Ecto-sp13_S_contig7271:3583..36571681463994.9946444-CDS-Ecto-sp13_S_contig7271:3583..3657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7271 3584..3657 -
1681463995.0053318-CDS-Ecto-sp13_S_contig7271:5708..57801681463995.0053318-CDS-Ecto-sp13_S_contig7271:5708..5780Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7271 5709..5780 -
1681463995.0191956-CDS-Ecto-sp13_S_contig7271:6507..65801681463995.0191956-CDS-Ecto-sp13_S_contig7271:6507..6580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7271 6508..6580 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7271.18417.1prot_Ecto-sp13_S_contig7271.18417.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7271 3584..6580 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7271.18417.1

>prot_Ecto-sp13_S_contig7271.18417.1 ID=prot_Ecto-sp13_S_contig7271.18417.1|Name=mRNA_Ecto-sp13_S_contig7271.18417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
GPIPSELGHLSALKELHLWQNQLSGRIPPQLGNLGALQHLDLRGNKLDGP
IPRELGKLAALASLNLSENNLSG
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mRNA from alignment at Ecto-sp13_S_contig7271:3583..6580-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7271.18417.1 ID=mRNA_Ecto-sp13_S_contig7271.18417.1|Name=mRNA_Ecto-sp13_S_contig7271.18417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2998bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7271:3583..6580- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCCCATCCCATCGGAACTGGGGCACCTTTCAGCACTGAAGGAGCTCCA
CCTTTGGCAGAACCAGCTAAGCGGTGAGTCGAACACTTGATTTGATAGCT
CTTTCCCCGACAGATTCGGCGTGAGTGGGTACGCTTGGTATTGTATATCG
ATCTCCGTAGATCCTGTCCCGCCAACTGCGTTGGCTTCCATTCACGCATG
CTATTCAACCGAACTCGAAAGAAAGAGATGCTGTTCAATCTCCTGGACTC
ACCATCTAGCTTGTTGGAATTGAGGTAGAGATGCGTCAAGGCGCTGAGAT
CTCCAAGCTGCGGTGGGATGTGTCCTGTAGAAGTGCGAGTCGAAGTAAGA
CAGTATCAGAAATCGGAAAAAAAGGTCGGGCGTTCTAGTTGCTCGGATGA
GTCTCGCCACTCTAATTTTAAGTGGACGCCAACTAGTTGGCGTCCACGAA
ACTTCAGAACTAGCGGGATAACTTTTATGACGCCAAACACGTCCACGGTA
GTTGGCGGGGTTCATGCATGTTGATCAAATCGCTTCGATATGTTCTAACT
CACCATCTAGCTCGTTGTTGCGGAGGTCGAGGTACTGGAGGGCGCGAAGC
TGTCCGAGCTGCGGCGGAATGTTGCCTGTAGATGAACAAGTCAACGTAGG
GCAGTTTGGAAGAGTACAGAAAAAATTATCCCGCGAGTTTGTGAAATTTC
GTGGACGCCAACTAGTAGGCGGGTACGAAATTTCAGAACTCGCGGGATAA
CTTTTTGTCTACCCTGCCCAACTGCCCTGCGTTGACTCCCTCGTCTACAG
GCCGTATCCCGCCGCAGCTAGGAAATCTTGGCGCCCTCCAGCACCTTGAC
CTCCGCGGTAACAAGTTAGATGGTGAGTTAAACAATTCAAAATGCGTTTT
ATTTTCCTTCGAGTTCTAAACATGCATGAATCCCGCGTATGCCCTACATA
TGAACTAGCCAACGCCCTGTGACCTAGAAGTGCACCAATGCCCCTTGATG
TGGCCGGTTGGGTTGGTTTGGTTGGGTCGCGGGTGAAGCATAGGAAGACC
CATTTCGCACACTTGGTAGTCGATGCTGGTGCATGGGACCAAATCGGGTC
GTTTACAAAATTTTAGAAGAGGATCGGTCGCCCCGATGGAATTCATGACA
AAATCAGGTCGTCTGCGGAGAGGGTAGTTGGGGCGGCCGTAAGAGTACCG
ATTTTGCGTGTCGAAGGCCGAAAAAATCAGTAATGTCGATACCGGCGCTC
CCGGTATTCCACGGTACGATGTCCAGTCGGACGGTATTTGTTTTTTCCAC
GGTATGATAAGGGGCTCCGCAGAATCATATACCCCCCCCCCTACCTGAGG
GGCCCCGCATTCAAAGAACATGAAGCACCGCATCACACACAGCACAGCAG
CACATAGTTGGGGAGTGTGAGTTGCAGGAAGGAGAGGATCTCGAGGAGGA
CATGAGACAGAGAGGGTGTGACATGGAGAATTTTGGTAAATTAGACAACA
GCGAACAAACGATCGCGGTAATTGGGGATAGATGGTGGGCACAAGAGGCC
ATAGGGGGAACGGTGTTCCGTCTAGAAAGGGACGCGTGGTCAATGGTCAA
ATGACTAAGGCAAGCAACAAATGAGTATGAAGCAACGCATCACAGGCAGA
GGCACACAGCACAGCAGCACATCGCACAAACACACAGTCCTAGCGACAGC
AGCGTTCAATTTTCACGGGTTGGGGCTTTGTTGAGGATTCAGTAGTGCCC
AAAACGGACGAACGCAAAAAAAACCGGGGGTACTGCTTCTACGCCCCTCC
CCTGGGGGAACCCCCCCCCCCCCCCCCCCCGGCGCCGCGGCTTGCGCCCC
GGCCGGAGTCATACTCTCGCCGCCGGGGGAATNNNNNNNNNNGGGGTACT
GCTTCTCCGCCCCCCCCCTGGGGGACCCCCCCCCCCCCCCCTCCCGGGTT
GCCGGTATTGCCGCGAGTTCGTATATACGCCAGCGCTGGCGAGATTCTTG
CACTCGCCAGTTCAACAATGTTTGGGTTGTGGTTGGAGGTAGACACGAAA
CCGAAGCCACAGCGGGTTTCCAGCCCTCAGGCAGCACCAAGGCGCTAGAC
CTTCACTAGGCCTAACCCACCCTACCCTAACCCTAACCGTAACCCAACAC
CCCAAGCTAGGTTGTTGTGCAGTGGGTAGGCCTAGGTCGCTGTACCGAGC
AACTGGAGCGTGCAAGAATCTCGCCAGCGCTGGTGTATATACGCCTCGTC
CGGTATTGCCAGCCGATATTGGAATTGCCTGAAATAGGGAATACCACGGC
CGGTATTGACGAGATTTCCCGGTTTCGACATCACTGGAAAAAGCTGTCGG
GGGTGTTCCCACACACCCTGGGCGGTGGAGGAGGGCGCGATTTTGTGGGT
GTACGTAGGCGCGATTTTGTCCACCAAACCACAGGGGCGTCCCGATTTTG
TCAATTTCCCTTGAGAAACATTGTCGCCAAAGACTCACTTCTCAAATTGA
TGTCTTTAAATTCCAGCTTCTCGAGGGCCCTGATCTGCCCTAGCTACGGA
GCAAGGAATGTAGTAAAGAACAAGTTCGTCCGTTGCGGGGTTTTGATACT
CCCGACAGGATTTCAACTAGCCTTGCAGAATACGCGCTCACACACGCGGT
TGGCGTGGAGGTTATAAGCACTTGCGGCTTGCTCAGGCCCCTATTTTCTT
GGGGAATGTTCTCTGTCCAGGAGTCACCGCATGTGCATGTTGGTATATTT
GCGGGCCGCGGGGATTGCAGGCTTCAAAATGTTTGCCCTACTCTTTACCG
TGCAAATCATCGCGAAGCATGTTAGCAATGTCGCAATTCCACACGAATTT
GGTTGATTGGATTCAACACGGCATTTGTTTCTTGAAATATCTCATCCTCT
ATGTGCCTGGTCGTCTGGTACAGGCCCCATTCCCCGGGAGCTAGGGAAGC
TTGCGGCACTTGCTTCTCTGAACCTGTCAGAGAACAACTTGAGTGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7271:3583..6580-

>mRNA_Ecto-sp13_S_contig7271.18417.1 ID=mRNA_Ecto-sp13_S_contig7271.18417.1|Name=mRNA_Ecto-sp13_S_contig7271.18417.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7271:3583..6580- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCCCATCCCATCGGAACTGGGGCACCTTTCAGCACTGAAGGAGCTCCA
CCTTTGGCAGAACCAGCTAAGCGGCCGTATCCCGCCGCAGCTAGGAAATC
TTGGCGCCCTCCAGCACCTTGACCTCCGCGGTAACAAGTTAGATGGCCCC
ATTCCCCGGGAGCTAGGGAAGCTTGCGGCACTTGCTTCTCTGAACCTGTC
AGAGAACAACTTGAGTGGT
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