mRNA_Ecto-sp13_S_contig727.18415.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig727.18415.1 vs. uniprot
Match: A0A6H5JA60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA60_9PHAE) HSP 1 Score: 693 bits (1788), Expect = 9.810e-244 Identity = 347/551 (62.98%), Postives = 415/551 (75.32%), Query Frame = 2
Query: 2 SAWARGATNVAHVQGSGIHPLCIVLEDVHYRRATRFPAWYECRGVGDSDRVVCSSTDRVYEHRTSVSEEKLSSNSSTSDVRFKTDPTISSTWWAFEGQSEMPRGKRTGFNGSVWIDCNGYYAYGGDVEIGRDHHRNLARAFEDEGVPSTEPHTEPLAKQ-DSVAIGLLVHDTIEEDGEGRADFFVRTTDDDCDAIWTSWPAVQETAIARGTVLVFDVFPSIGNLFITLHRIIKTARLLEVALALRWRRFHGFRAAFDPASIKWDQDLTTLFQRAQQSTQGAEFERLYPFSFLDGQMVLSHWQLQILARKTGIPDTSLAEKAAAIGEGFSNTTLRSLSRDIVQSSRLPLQPCVWNMFLRRSAAMMASLEAHNPWTSHGFGPRPKDYVAWHIRTSDGESKMSFLPDVHRYIFHGQSSTTVFPIFQSATDAAKNMCPRVFHEDVPMTPVYISSNSKSMSRNCTALAAEHGIGSGFVDLGIDDVDAHTDFSRNPEATALNAFIDYLYLMDASIVVQTGSSFSSTVASIKGFICRTKGNPEEMPVLDLKICMPADC 1651
S WARGAT+VA G+GIHP C +LE V + R PAWY CRG G++D VVCSS DR++E RTS+S+E SST+++R +TD T SSTWWAFEGQ E G WIDCNGYYA+GG+ + + + N+ RA EDE STE +PLAK+ DS +G V ++E+ E D FV TT DDC +WTSWPAVQE AIA GTVLVFD+FPS+GNLFITL +IKTARLLEVAL L+W +F GFRAAFD ASIKWD D TT+ Q+A++ T GAE +RLYP F DG +VLS QL+ LA +TGIPDTSLAE A A+ E +S+ LR LS+ I S+ +P + C WNM LRRS +M+ASLEAHNPWT GFGPRPKDYVAWH+RTSDGES+ SF PDVH YI HGQSSTTV PIF SATDAA+ MCP++FHED P PVYISSNSKSM+RNCTALAAEH + +GFVDLGIDD+DAHT FS+NP ATALNAFIDYLYLMD+S+++QTGSSFSSTVA +K CR +P E+PV L +C+P DC
Sbjct: 4 SPWARGATSVALKHGTGIHPFCWILEGVDRPQTARLPAWYGCRG-GENDTVVCSSADRLHEQRTSLSDEDWVPRSSTNNLRHETDRTTSSTWWAFEGQRETRGNDSNGVKDPGWIDCNGYYAFGGEADSDKSYRGNMRRALEDEEASSTELQVKPLAKKNDSTELGSSVDVALQEETEKGNDRFVHTTGDDCHPLWTSWPAVQEAAIANGTVLVFDIFPSVGNLFITLGNLIKTARLLEVALFLKWDKFPGFRAAFDTASIKWDLDPTTVVQKAEELTLGAEVDRLYPLKFSDGNLVLSSQQLEALAIQTGIPDTSLAEMAVAVKERWSS--LRRLSQAIAGSAVVPPETCAWNMLLRRSPSMIASLEAHNPWTPSGFGPRPKDYVAWHVRTSDGESEHSFNPDVHTYILHGQSSTTVVPIFLSATDAAEKMCPKMFHEDAPKMPVYISSNSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLPHDC 551
BLAST of mRNA_Ecto-sp13_S_contig727.18415.1 vs. uniprot
Match: A0A6H5L1Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z7_9PHAE) HSP 1 Score: 531 bits (1367), Expect = 1.030e-182 Identity = 259/370 (70.00%), Postives = 298/370 (80.54%), Query Frame = 2
Query: 557 TTDDDCDAIWTSWPAVQETAIARGTVLVFDVFPSIGNLFITLHRIIKTARLLEVALALRWRRFHGFRAAFDPASIKWDQDLTTLFQRAQQSTQGAEFERLYPFSFLDGQMVLSHWQLQILARKTGIPDTSLAEKAAAIGEGFSNTT-LRSLSRDIVQSSRLPLQPCVWNMFLRRSAAMMASLEAHNPWTSHGFGPRPKDYVAWHIRTSDGESKMSFLPDVHRYIFHGQSSTTVFPIFQSATDAAKNMCPRVFHEDVPMTPVYISSNSKSMSRNCTALAA----EHGIGSGFVDLGIDDVDAHTDFSRNPEATALNAFIDYLYLMDASIVVQTGSSFSSTVASIKGFICRTKGNPEEMPVLDLKICMPADC 1651
TTDDDCD+ W+SWP+VQE A+ARGTV+VF+VFPS+GN+F+ LH IIKTARLLEVAL L W+RF GFR AFDPASIKWD D TL Q+A +QGAE ERLYPF+F DGQMVLSHWQL+ +ARK G+P TS+ E AAA+ EG+S L LSR+ VQ+ R + PC WNM LRRS AMMASLEAHNPW +H F PRPK YVAWHIRTS GE+ SF P VH YIFH QSST+V PIF SATDAA+ MCPR F +DVP+TPVYISSNSK+M+RNCT LAA EH +G GFVDLGIDDVDAHT FS+NP+ATALNAFIDYLYLMD+SI+VQTGSSFS TVASIKG C PE +PV +L +C+PADC
Sbjct: 3 TTDDDCDSTWSSWPSVQEAAVARGTVVVFNVFPSVGNMFVILHNIIKTARLLEVALLLNWQRFEGFREAFDPASIKWDLDQPTLVQQAAPRSQGAEAERLYPFTFPDGQMVLSHWQLETIARKVGLPGTSVDEMAAALEEGYSKIGGLGRLSRETVQNERFSVLPCAWNMLLRRSPAMMASLEAHNPWMTHEFNPRPKKYVAWHIRTSHGETNGSFTPHVHTYIFHRQSSTSVLPIFLSATDAAERMCPRFFDQDVPITPVYISSNSKTMARNCTVLAATLAAEHKVGPGFVDLGIDDVDAHTTFSKNPKATALNAFIDYLYLMDSSIIVQTGSSFSFTVASIKGMSCHGVAKPEGLPVKNLNVCLPADC 372
BLAST of mRNA_Ecto-sp13_S_contig727.18415.1 vs. uniprot
Match: A0A6H5JS37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS37_9PHAE) HSP 1 Score: 316 bits (809), Expect = 4.890e-96 Identity = 209/584 (35.79%), Postives = 281/584 (48.12%), Query Frame = 2
Query: 89 YRRATRFPAWYECRGVGDSDRVVCSSTDRVYE-------HRTSVS--------------EEKLSSNSSTSDVRFKTDPTISSTWWAFEGQSEMPRGKRTGFNGSVWIDCNGYYAYG------------------------------------GDVEIGRDHHRNLARAFEDEGVPSTEPHTEPLAKQDSVAIGLLVHDTIEEDGEGRADFFVRT-TDDDCDAIWTSWPAVQETAIARGTVLVFDVFPSIGNLFITLHRIIKTARLLEVALALRWRRFHGFRAAFDPASIKWDQDLTTLFQRAQQSTQGAEFERLYPFSFLDGQMVLSHWQLQILARKTGI----PDTSLAEKAAAIGEGFSNTTLRSLSRDIVQSSRLPLQPCVWNMFLRRSAAMMASLEAHNPWTSHGFG-PRPKDYVAWHIRTSDGESKMSFLPDVHRYIFHGQSSTTVFPIFQSATDAAKNMCPRVFHEDVPMTPVYISSNSKSMSRNCTALAAEHGIGSGFVDLGIDDVDAHTDFSRNPEATALNAFIDYLYLMDASIVVQTGSSFSSTVASIKGFICRTKGNPEEMPVLDLKICMPADC 1651
+RR TR A R GD +CS D Y HRT E S + DVR P WWA +G G + W+DC+GYYA+G G VE G + RNL D G S E + + A G + V D +CD +W +WPA+QE+AIA GTV+VFD+ +GN F+ L II+ AR LE+ L + W+ F GFR AFD +KWD D +RA++ ++G + F F DG MVL QL +LA K GI PD + + +R +Q+ QPC WNMF+RRSAAMM LEA+NPW G R + Y+A+ IRT++GE+ SF P +H YIF+ ST V + +AT+ AK CP F+ D P++ISSNS SM+RNC+A AA + G VD+G+ DAHT FS +P+ AL AF+D+L+++DA +VV+T SSFS T +KG C EMP+ L +C+PA C
Sbjct: 8 HRRPTRPSAPQPYRCDGDHAEALCSKIDSDYSIPTVTGAHRTEQGGVTGGGDTASAGTLREAFPSETRQEDVRLSVPPQY--IWWACKGTRRSSPGDVGDVGDAAWVDCDGYYAFGRREVNPTCRSEPDEKGSDWFGLLSANNPENPEFIPPGRVE-GLPNPRNLELLEADRG-QSFEEVSSSSSGGVPAAQGTAXXXXXXXXXXXXXNQLVHAPADSECDELWRTWPAMQESAIANGTVVVFDLVSRVGNAFMDLRNIIQVARWLELGLVINWKGFQGFRDAFDTGELKWDIDTEPFRRRAKEISRGVNPSGFHLFRFYDGFMVLCDHQLTMLASKVGIAIQHPDAMMLQLKKVFP-----VKIRYWISGGLQNGLPASQPCTWNMFVRRSAAMMRRLEAYNPWRVEGSSMSRFQKYIAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFAATEEAKGACPAAFNADEGDVPLFISSNSMSMARNCSAEAAGRKMLPGLVDVGVPVGDAHTTFSAHPKIAALKAFVDFLFILDAEVVVRTASSFSGTAVEMKGMNCFEAKVSVEMPISGLYVCVPAGC 582
BLAST of mRNA_Ecto-sp13_S_contig727.18415.1 vs. uniprot
Match: A0A6H5JUR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUR5_9PHAE) HSP 1 Score: 300 bits (768), Expect = 7.670e-95 Identity = 145/219 (66.21%), Postives = 176/219 (80.37%), Query Frame = 2
Query: 995 LRSLSRDIVQSSRLPLQPCVWNMFLRRSAAMMASLEAHNPWTSHGFGPRPKDYVAWHIRTSDGESKMSFLPDVHRYIFHGQSSTTVFPIFQSATDAAKNMCPRVFHEDVPMTPVYISSNSKSMSRNCTALAAEHGIGSGFVDLGIDDVDAHTDFSRNPEATALNAFIDYLYLMDASIVVQTGSSFSSTVASIKGFICRTKGNPEEMPVLDLKICMPADC 1651
+R SRDIV++S LQ C WNM LRRS ++MASL+A+NPWT GFG RP +YVAWHIRTS+GE+K SF PDVH+YIF+GQ+S VFP+F SAT A+ CP+++H+++P+ PVYISSNSK+MSRNCTALAAE+ I SGFVDLGI D DAHT +S NP+ATALNAFIDYLYLMD+SI+VQTGSSF+ TVASIKG CR + PV L IC+P DC
Sbjct: 1 MRVFSRDIVRNSPDSLQACAWNMLLRRSHSIMASLDANNPWTPAGFGSRPAEYVAWHIRTSNGETKESFSPDVHQYIFNGQTSAAVFPLFLSATSFAEKACPKLYHDNIPIMPVYISSNSKTMSRNCTALAAENKIQSGFVDLGIADSDAHTGYSANPDATALNAFIDYLYLMDSSIIVQTGSSFAFTVASIKGTSCRGAPKTKGAPVRSLYICLPNDC 219
BLAST of mRNA_Ecto-sp13_S_contig727.18415.1 vs. uniprot
Match: A0A6H5KDJ4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ4_9PHAE) HSP 1 Score: 238 bits (607), Expect = 9.880e-70 Identity = 137/319 (42.95%), Postives = 193/319 (60.50%), Query Frame = 2
Query: 707 LLEVALALRWRRFHGFRAAFDPASIKWDQDLTTLFQRAQQSTQGAEFERLYPFSFLDGQMVLSHWQLQILARKTGIPDTSLAEKAAAIGEGFSNTTLRSLSRDIVQSSRLPLQP-CVWNMFLRRSAAMMASLEAHNPWTSHGFGPRPK-DYVAWHIRTSDGESKMSFLPDVHRYIFHGQSSTTVFPIFQSATDAAKNMCPRVFHEDVPMTPVYISSNSKSMSRNCTALAAEHGIGSGFVDLGIDDVDAHTDFSRNPEATALNAFIDYLYLMDASIVVQTGSSFSSTVASIKGFICRTKGNPEEMPV--LDLKICMPADC 1651
+LEVAL + +F FR AF+P IKWD D R + ++G + E + FLDG +++S QL++++ G+ + + A + F N R + ++ L L P C WNM LRRS MM S+EAH PW + G PR Y AWHIRTS+GE++ SF RYIF+ +S ++ P+F S +A++ CP F + +PVYISSNSKS +RNC+A A + I + FVDLGI+ DAHT FS+NP+ T +NAFID+LYLMDA I+V+T SSFS + IK + C ++PV + L +C+PADC
Sbjct: 1 MLEVALIINLDQFPAFRVAFEPEVIKWDLDTEPFKLRGGEISKGVDAEDRHALQFLDGFLIVSDHQLEVMSASFGVGSGTHSGIKAGFRKAFKNRW-----RHYLATANLDLAPPCAWNMVLRRSPTMMNSMEAHTPWVTAGDSPRAHAHYHAWHIRTSEGETERSF--SKQRYIFNNVASQSICPMFVSTREASEEACPSRFSGND--SPVYISSNSKSTARNCSAEARKKDIETAFVDLGINAQDAHTAFSKNPD-TVVNAFIDFLYLMDADIIVRTASSFSGAIIDIKSYRCMD-AYLGKLPVFRMHLFVCVPADC 308
BLAST of mRNA_Ecto-sp13_S_contig727.18415.1 vs. uniprot
Match: D8LBV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV4_ECTSI) HSP 1 Score: 219 bits (557), Expect = 7.880e-60 Identity = 143/421 (33.97%), Postives = 201/421 (47.74%), Query Frame = 2
Query: 236 DVRFKTDPTISSTWWAFEGQSEMPRGKRTGFNGSVWIDCNGYYAYG--------------------GDVEIGRDHHRNLARAFEDEGVPSTEPHTEPLAKQDS----------------VAIGLLVHDTIEEDGEGRADFFVRT-TDDDCDAIWTSWPAVQETAIARGTVLVFDVFPSIGNLFITLHRIIKTARLLEVALALRWRRFHGFRAAFDPASIKWDQDLTTLFQRAQQSTQGAEFERLYPFSFLDGQMVLSHWQLQILARKTGI----PDTSLAEKAAAIGEGFSNTTLRSLSRDIVQSSRLPLQPCVWNMFLRRSAAMMASLEAHNPWTSHGFG-PRPKDYVAWHIRTSDGESKMSFLPDVHRYIFHGQSSTTVFPIFQSATDAAKNMCPRVFHEDVPMTPVYISSNSKSMSRN 1372
DVR P WWA +G G + W+DC+GYYA+G G + + ++ EG+P+ P L + D VA G + V D +CD +W +WPA+QE+AIA GTV+VFD+ +GN F+ L II+ AR LE+ L + W+ F GFR AFD +KWD D +RA+ ++G + F F DG MVL QL +LA K GI PD + + +R +Q+ QPC WNMF++RSA+MM SLE +NPW G R + YVA+ IRT++GE+ SF P +H YIF+ ST V + +AT+ AK +CP F+ D P++ISSNS + R+
Sbjct: 78 DVRLSVPP--QHIWWACKGTRRSSAGDVGDVGDAAWVDCDGYYAFGRQEVNPTCRSEPDEKGSEWFGLLSANNPENPEFIQSGRVEGLPN--PRNLELLEADRGQSFEEVSSSSSGGVPVAQGAAXXXXXXXXXXXXXNQLVHAPADSECDELWRTWPAMQESAIANGTVVVFDLVSRVGNAFMDLRNIIQVARWLELGLVVNWKGFQGFRDAFDTGELKWDIDTEPFRRRAKAISRGVNPSGFHLFWFYDGFMVLCDHQLTMLASKMGIAIQHPDAMVLQLKKVFP-----VKIRYWISGRLQNGLPASQPCTWNMFVKRSASMMRSLEVYNPWRVEGSSMSRFQKYVAFQIRTTEGETAGSFDPKIHTYIFNNLRSTVVCNWYFTATEEAKGVCPAAFNADEGDVPLFISSNSIVLLRH 489
BLAST of mRNA_Ecto-sp13_S_contig727.18415.1 vs. uniprot
Match: A0A6H5L130_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L130_9PHAE) HSP 1 Score: 162 bits (410), Expect = 2.030e-43 Identity = 83/144 (57.64%), Postives = 102/144 (70.83%), Query Frame = 2
Query: 11 ARGATNVAHVQGSGIHPLCIVLEDVHYRRATRFPAWYECRGVGDSDRVVCSSTDRVYEHRTSVSEEKLSSNSSTSDVRFKTDPTISSTWWAFEGQSEMPRGKRTGFNGSVWIDCNGYYAYGGDVEIGRDHHRNLARAFEDEGVP 442
AR ATNV +QG+G+HPLC LE + FPAWY C G GD+D VVCSS+DRVYEHRTS+ +E SS ST+++RF TD T SSTWW FEG+ E+P +RTGF G WIDC+GYYA+GG+V+ D RN+ RA E E P
Sbjct: 8 ARSATNVGDLQGTGVHPLCRALEGGP--QTDSFPAWYSCHGGGDNDMVVCSSSDRVYEHRTSLFDENWSSAFSTTNLRFMTDST-SSTWWVFEGRREIPPDERTGFTGPAWIDCDGYYAHGGEVDGEGD--RNMQRALEGEERP 146
BLAST of mRNA_Ecto-sp13_S_contig727.18415.1 vs. uniprot
Match: A0A6H5JBZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ2_9PHAE) HSP 1 Score: 156 bits (395), Expect = 8.240e-42 Identity = 73/109 (66.97%), Postives = 88/109 (80.73%), Query Frame = 2
Query: 1325 MTPVYISSNSKSMSRNCTALAAEHGIGSGFVDLGIDDVDAHTDFSRNPEATALNAFIDYLYLMDASIVVQTGSSFSSTVASIKGFICRTKGNPEEMPVLDLKICMPADC 1651
M P + S SKSM+RNCTALAAEH + +GFVDLGIDD+DAHT FS+NP ATALNAFIDYLYLMD+S+++QTGSSFSSTVA +K CR +P E+PV L +C+P DC
Sbjct: 1 MFPPFFRSRSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNATALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKRLNVCLPHDC 109 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig727.18415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig727.18415.1 >prot_Ecto-sp13_S_contig727.18415.1 ID=prot_Ecto-sp13_S_contig727.18415.1|Name=mRNA_Ecto-sp13_S_contig727.18415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=451bp MPRGKRTGFNGSVWIDCNGYYAYGGDVEIGRDHHRNLARAFEDEGVPSTEback to top mRNA from alignment at Ecto-sp13_S_contig727:1391..12607- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig727.18415.1 ID=mRNA_Ecto-sp13_S_contig727.18415.1|Name=mRNA_Ecto-sp13_S_contig727.18415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=11217bp|location=Sequence derived from alignment at Ecto-sp13_S_contig727:1391..12607- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig727:1391..12607- >mRNA_Ecto-sp13_S_contig727.18415.1 ID=mRNA_Ecto-sp13_S_contig727.18415.1|Name=mRNA_Ecto-sp13_S_contig727.18415.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig727:1391..12607- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |