mRNA_Ecto-sp13_S_contig7269.18413.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7269.18413.1 vs. uniprot
Match: A0A6H5K9Y9_9PHAE (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Y9_9PHAE) HSP 1 Score: 468 bits (1203), Expect = 3.900e-162 Identity = 261/324 (80.56%), Postives = 264/324 (81.48%), Query Frame = 1
Query: 1 RAPRVFLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSXXXXXXXX---------------------SAGGADKDVELRVECLTRRQPGIGGGG--EVEDVDTPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGTVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLSSYLRN---------------------GDRSLPDIVFVCKERDVDAPPLLEALAEYEQALSEERRQDHVNSSGGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 840
RAPRV+LNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATS S GADK VELRVECLTRRQPGIGGGG EVEDVD PEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKG VSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTL+SYLR+ GD SLPDIVFVCKERDVDAPPLLEALAEYEQA SEERRQDHVNSS GSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL
Sbjct: 142 RAPRVYLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSSSTSSSSRLERSGEKIGSGRGGRRGRGKRSTVGADKVVELRVECLTRRQPGIGGGGDGEVEDVDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLASYLRSLELRQSSCDLSSIIGLARDRGGDLSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEERRQDHVNSSDGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 465
BLAST of mRNA_Ecto-sp13_S_contig7269.18413.1 vs. uniprot
Match: D7G8G1_ECTSI (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G1_ECTSI) HSP 1 Score: 404 bits (1039), Expect = 8.040e-140 Identity = 225/291 (77.32%), Postives = 234/291 (80.41%), Query Frame = 1
Query: 94 MRLRDGSPVRVFDGVNGEFLAAVATSXXXXXXXX-------------------SAGGADKDVELRVECLTRRQPGIGGGG--EVEDVDTPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGTVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLSSYLRN---------------------GDRSLPDIVFVCKERDVDAPPLLEALAEYEQALSEERRQDHVNSSGGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 840
MRLRDG+PVRVFDGVNGEFLAAVATS SAGGA+K +ELRVECLTRRQPGIGGGG EVED+D PEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKG VSDASMLDRLGAVTAVEAAEQCERMTVPP+ASPVTL+SYLR+ GDRSLPDIVFVCKERDVDAPPLLEALAEYEQA SE+RRQDHVNSS +RNANAAFLIGPEGGFDPDEIG LAQYPFVRFVSLGRTVLRAETAAVYAL
Sbjct: 1 MRLRDGNPVRVFDGVNGEFLAAVATSSSSSSRLERSGEKIGSGRGGRRGRGKRSAGGAEKVIELRVECLTRRQPGIGGGGGGEVEDLDAPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGAVSDASMLDRLGAVTAVEAAEQCERMTVPPMASPVTLASYLRSLELRHSSCDGSSIVGLARDRDGDRSLPDIVFVCKERDVDAPPLLEALAEYEQAFSEQRRQDHVNSSDDNRNANAAFLIGPEGGFDPDEIGTLAQYPFVRFVSLGRTVLRAETAAVYAL 291
BLAST of mRNA_Ecto-sp13_S_contig7269.18413.1 vs. uniprot
Match: A0A835ZHN8_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN8_9STRA) HSP 1 Score: 150 bits (378), Expect = 1.470e-40 Identity = 110/255 (43.14%), Postives = 146/255 (57.25%), Query Frame = 1
Query: 94 MRLRDGSPVRVFDGVNGEFLAAVATSXXXXXXXXSAGG---ADKDVELRVECLTRRQPGIGGGGEVEDVDTPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGTVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLSSYL---RNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQALSEERRQDHVNSSGGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 840
MRLRDGS VR F+G +GE+L ++ + + G A + L+VE R Q D+D + L+ API++QR+K+LVEKA E+G + + PVLTA TQ+ DA RL + A+EAAEQCER+++P + P L L + + +FVC+ER +PPLLEALA A V SS A AAFL+GPEGGF DE LA P+++ VSLG TVLRAETAA+YAL
Sbjct: 1 MRLRDGSTVRAFNGRDGEYLCTLSQTDGSSSSKPAGKGRRSAKPALALQVEQQLRSQ----AEDSCADLD---VWLLCAPIKRQRMKLLVEKATELGVTCIAPVLTAHTQEAL--DAEGTSRLLPI-AIEAAEQCERLSLPHLHPPAPLPELLARWHSEPHTRARQLFVCQERSPQSPPLLEALAAASAARG-------VPSSA----APAAFLVGPEGGFSADEREMLAGLPWIQGVSLGATVLRAETAALYAL 234
BLAST of mRNA_Ecto-sp13_S_contig7269.18413.1 vs. uniprot
Match: W7TJZ1_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJZ1_9STRA) HSP 1 Score: 149 bits (376), Expect = 2.490e-38 Identity = 102/283 (36.04%), Postives = 156/283 (55.12%), Query Frame = 1
Query: 1 RAPRVFLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSXXXXXXXXSAGGADKDVELR---VECLTRRQPGIGGGGEVEDVDTPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGTVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLSSYLRNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQALSEERRQDHVNSSGGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 840
R+PR+++ A L V ++ +Q YL+ VMRLR G+ VRVF+ +GE++A VA G +DK R V + + + GGG + D ++ L FAP+++ RLK+L EKA E+G + L PVLT T M+ ++ VEAAEQCER+ VP V +T + L +R +++C+ER+ A P++E L + ++E+R+ G+ + +IGPEGGF P E+ A+ +P R VSLG +VLRAETA + A+
Sbjct: 156 RSPRLYVPEALLGKHVPVPISTDQRHYLLKVMRLRPGAYVRVFNRRDGEWIAVVADEAPDMEPKREIGRSDKKRTRRGSDVSLIAKARIREGGGEQRNDEGESKLRLCFAPLKRARLKILFEKATEMGVTHLQPVLTEHTDVAPRHAEEMMKKMEGGL-VEAAEQCERIGVPEVLPAMTFDALLEE-ERGGGGRLYICRERE-GARPIMEVLERDWKEINEDRKNGKKEEHRGT----PSIVIGPEGGFSPRELAAMKGHP--RLVSLGPSVLRAETAGLVAV 429
BLAST of mRNA_Ecto-sp13_S_contig7269.18413.1 vs. uniprot
Match: A0A199YJ05_9PROT (Ribosomal RNA small subunit methyltransferase E n=12 Tax=Thalassospira TaxID=168934 RepID=A0A199YJ05_9PROT) HSP 1 Score: 142 bits (357), Expect = 2.960e-37 Identity = 106/265 (40.00%), Postives = 144/265 (54.34%), Query Frame = 1
Query: 52 VQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSXXXXXXXXSAGGADKDVELRVECLTRRQPGIGGGGEVEDVDTPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGTVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLSSYLRNGDRSLPDI--VFVCKERDVDAPPLLEALAEYEQALSEERRQDHVNSSGGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 840
++L PEQ+ YL VMRL+ G+PV++F+G++GE+L ++ G + +LR + G EV LVFAPI+KQRL L+EKAVE+GA L PV+T Q G ++D LDRL A +EAAEQCER+TVP V PV L ++ N LP+ + C E P+ E L++ A D+ N N A +IGPEGGF DE+ + + PF VSLG +LRAETAA+ AL
Sbjct: 24 IELAPEQSHYLEHVMRLKPGTPVKIFNGLDGEWLGTISE------LRKKKGSVTAERQLRAQ-----------GNEVGPT------LVFAPIKKQRLDFLIEKAVELGAQSLQPVIT---QHG-ITDKVRLDRLQAQV-IEAAEQCERLTVPEVCEPVRLLDWVAN----LPENHHLLFCDETG-SGSPIGEVLSQL-LAKGAGSFIDNTNV------VNHAIVIGPEGGFSADELERIRKQPFATPVSLGPRILRAETAAIAAL 248
BLAST of mRNA_Ecto-sp13_S_contig7269.18413.1 vs. uniprot
Match: A0A367XFC7_9PROT (Ribosomal RNA small subunit methyltransferase E n=5 Tax=Thalassospira TaxID=168934 RepID=A0A367XFC7_9PROT) HSP 1 Score: 141 bits (356), Expect = 4.170e-37 Identity = 102/277 (36.82%), Postives = 147/277 (53.07%), Query Frame = 1
Query: 10 RVFLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSXXXXXXXXSAGGADKDVELRVECLTRRQPGIGGGGEVEDVDTPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGTVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLSSYLRNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQALSEERRQDHVNSSGGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 840
R+F++ A + G + L+PEQ+ YL VMRL+ G+PV++F+G +GE+LA ++ K + VE R Q G L FAPI+KQRL L+EK+VE+G +RL P++TA + ++D LDRL A +EAAEQ ER+ VP + +PV L +L N + + C E +P + EY L+E + + + N +IGPEGGF PDEI + + F VSLG +LRAETAA+ AL
Sbjct: 11 RLFVSDA-ITAGAEMALSPEQSHYLEHVMRLKPGTPVKIFNGADGEWLATISELRK------------KKGAVTVESRLRDQQNSTGPA-----------LAFAPIKKQRLDFLIEKSVELGVTRLMPIITAHS----ITDKVRLDRLQAQV-IEAAEQSERLDVPEIDAPVKLYDWLANWPEN--SHLLFCDETGSGSP-----IGEY---LTESLAKPAGSVIDNNNVVNHTLVIGPEGGFAPDEIDRIRKQSFATAVSLGPRILRAETAAIAAL 248
BLAST of mRNA_Ecto-sp13_S_contig7269.18413.1 vs. uniprot
Match: UPI00143106BB (16S rRNA (uracil(1498)-N(3))-methyltransferase n=2 Tax=Thalassospira TaxID=168934 RepID=UPI00143106BB) HSP 1 Score: 141 bits (356), Expect = 4.170e-37 Identity = 105/266 (39.47%), Postives = 141/266 (53.01%), Query Frame = 1
Query: 43 GQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSXXXXXXXXSAGGADKDVELRVECLTRRQPGIGGGGEVEDVDTPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGTVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLSSYLRNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQALSEERRQDHVNSSGGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 840
G ++L PEQ+ YL VMRL+ G+PV++F+G++GE+L + G D +LR + G EV LVFAPI+KQRL L+EKAVE+G RL PV+T Q G ++D LDRL + +EAAEQCER+TVP V PV L ++ N S + C E P+ E L++ A D+ N N A +IGPEGGF DE+ + + F VSLG +LRAETAA+ AL
Sbjct: 21 GSEIELAPEQSHYLEHVMRLKPGTPVKIFNGLDGEWLGTIIA------LRKKKGSVTADRQLREQ-----------GSEVGPT------LVFAPIKKQRLDFLIEKAVELGVERLQPVIT---QHG-ITDKVRLDRLQSQV-IEAAEQCERLTVPEVCEPVRLLDWVANVPES--HHLLFCDETG-SGSPIGEVLSQL-LAKGAGSVIDNTNV------VNHAIVIGPEGGFSADELERIRKQSFATPVSLGPRILRAETAAIAAL 248
BLAST of mRNA_Ecto-sp13_S_contig7269.18413.1 vs. uniprot
Match: A0A4D9D730_9STRA (16S rRNA (uracil(1498)-N(3))-methyltransferase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D730_9STRA) HSP 1 Score: 149 bits (375), Expect = 7.930e-37 Identity = 102/283 (36.04%), Postives = 155/283 (54.77%), Query Frame = 1
Query: 1 RAPRVFLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSXXXXXXXXSAGGADKDVELR---VECLTRRQPGIGGGGEVEDVDTPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGTVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLSSYLRNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQALSEERRQDHVNSSGGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 840
R+PR+++ A L V ++ +Q YL+ VMRLR G+ VRVF+ +GE++A +A G +DK R V + + Q GGG + D ++ L FAP+++ RLK+L EKA E+G + L PVLT T M+ ++ VEAAEQCER+ VP V +T + L +R +++C+ER A P++E L + ++E+R+ G+ + +IGPEGGF P E+ A+ +P R VSLG +VLRAETA + A+
Sbjct: 607 RSPRLYVPEALLGRHVPVPISADQRHYLLKVMRLRPGAYVRVFNRRDGEWIAVIADEAPDMEPKREIGRSDKKRTRRGSDVSLIAKAQIREGGGEQRNDEGESKLRLCFAPLKRARLKILFEKATEMGVTHLQPVLTEYTDVAPRHAEEMMTKMERGL-VEAAEQCERIGVPEVLPAMTFDALLEE-ERDGGGRLYICRERG-GARPIMEVLERDSKEINEDRKNGKKEEHRGT----PSIVIGPEGGFSPRELAAMKGHP--RLVSLGPSVLRAETAGLVAV 880
BLAST of mRNA_Ecto-sp13_S_contig7269.18413.1 vs. uniprot
Match: K2LDN9_9PROT (Ribosomal RNA small subunit methyltransferase E n=9 Tax=Thalassospiraceae TaxID=2844866 RepID=K2LDN9_9PROT) HSP 1 Score: 139 bits (349), Expect = 4.530e-36 Identity = 105/265 (39.62%), Postives = 144/265 (54.34%), Query Frame = 1
Query: 52 VQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSXXXXXXXXSAGGADKDVELRVECLTRRQPGIGGGGEVEDVDTPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGTVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLSSYLRNGDRSLPDI--VFVCKERDVDAPPLLEALAEYEQALSEERRQDHVNSSGGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 840
++L PEQ+ YL VMRL+ G+PV++F+G++GE+L ++ G + +LR + G E+ LVFAPI+KQRL L+EKAVE+G +L PV+T Q G ++D LDRL A VEAAEQCER+TVP V PV L ++ N LP+ + C E P+ E L++ A D+ N N A +IGPEGGF DE+ + + PF VSLG +LRAETAA+ AL
Sbjct: 24 IELAPEQSHYLEHVMRLKPGTPVKIFNGLDGEWLGTISE------LRKKKGRVTAEQQLREQ-----------GQELGPT------LVFAPIKKQRLDFLIEKAVELGVEKLQPVIT---QHG-ITDKVRLDRLQAQV-VEAAEQCERLTVPEVCEPVRLLDWVAN----LPENHRLLFCDETG-SGSPIGEVLSQL-LAKGAGSFIDNTNV------VNHAIVIGPEGGFSADELERIRKQPFATPVSLGPRILRAETAAIAAL 248
BLAST of mRNA_Ecto-sp13_S_contig7269.18413.1 vs. uniprot
Match: A0A8J6LQW5_9PROT (Ribosomal RNA small subunit methyltransferase E n=2 Tax=Euryhalocaulis TaxID=1712422 RepID=A0A8J6LQW5_9PROT) HSP 1 Score: 137 bits (345), Expect = 9.560e-36 Identity = 104/278 (37.41%), Postives = 141/278 (50.72%), Query Frame = 1
Query: 7 PRVFLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFLAAVATSXXXXXXXXSAGGADKDVELRVECLTRRQPGIGGGGEVEDVDTPEIELVFAPIRKQRLKMLVEKAVEVGASRLTPVLTARTQKGTVSDASMLDRLGAVTAVEAAEQCERMTVPPVASPVTLSSYLRNGDRSLPDIVFVCKERDVDAPPLLEALAEYEQALSEERRQDHVNSSGGSRNANAAFLIGPEGGFDPDEIGALAQYPFVRFVSLGRTVLRAETAAVYAL 840
PR+F++ A L G + L +Q YLV+VMR +DG PVRVF+G +GE+ A VA A ++L + + P P++ L+FAP++K R +VEKA E+GA+R+ PV T T S+ +DR+ A+ A EAAEQ ER+ +P +A TL L D + P + C E + PP+L+AL GG A LIGPEGGF DE L FVR VSLG +LRA+TAA AL
Sbjct: 5 PRLFIDAA-LGKGAEIALEKDQAHYLVNVMRRKDGDPVRVFNGKDGEWRAEVA----------QATKRAATIKLAEQTRPQHAP-------------PDLWLLFAPVKKSRTDFIVEKATELGAARIAPVFTRYTN----SERVRMDRMEAL-AREAAEQTERLDLPDIAEARTLDQALDGWDAARP--LIYCDEGG-EVPPMLKAL-------------------GGLETGKLAVLIGPEGGFSEDERARLKSLDFVRPVSLGPRILRADTAAAAAL 231 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7269.18413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7269.18413.1 >prot_Ecto-sp13_S_contig7269.18413.1 ID=prot_Ecto-sp13_S_contig7269.18413.1|Name=mRNA_Ecto-sp13_S_contig7269.18413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp RAPRVFLNGANLHVGQTVQLTPEQTRYLVSVMRLRDGSPVRVFDGVNGEFback to top mRNA from alignment at Ecto-sp13_S_contig7269:3310..4269+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7269.18413.1 ID=mRNA_Ecto-sp13_S_contig7269.18413.1|Name=mRNA_Ecto-sp13_S_contig7269.18413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=960bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7269:3310..4269+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7269:3310..4269+ >mRNA_Ecto-sp13_S_contig7269.18413.1 ID=mRNA_Ecto-sp13_S_contig7269.18413.1|Name=mRNA_Ecto-sp13_S_contig7269.18413.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7269:3310..4269+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |