mRNA_Ecto-sp13_S_contig7267.18411.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7267.18411.1
Unique NamemRNA_Ecto-sp13_S_contig7267.18411.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7267.18411.1 vs. uniprot
Match: D8LE19_ECTSI (Rab28, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE19_ECTSI)

HSP 1 Score: 435 bits (1118), Expect = 7.960e-154
Identity = 212/218 (97.25%), Postives = 214/218 (98.17%), Query Frame = 1 
Query:    1 ERNDPKVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRIFLPGDVQVTMQMWDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGIALSRPQLDAAGGVLSASIVNYRRHDEEVHGGELPDYTSRRPKTCTLS 654
            ER   KVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRI LPGDVQVTMQ+WDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQ+LDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGIALSRPQLDAAGGVLSASIVNYRRHDEEVHGGELPDYTSRRPKTCTLS
Sbjct:   25 ERLQYKVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRILLPGDVQVTMQIWDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQDLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGIALSRPQLDAAGGVLSASIVNYRRHDEEVHGGELPDYTSRRPKTCTLS 242
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BLAST of mRNA_Ecto-sp13_S_contig7267.18411.1 vs. uniprot
Match: A0A6H5JPJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPJ9_9PHAE)

HSP 1 Score: 428 bits (1101), Expect = 5.420e-150
Identity = 211/227 (92.95%), Postives = 214/227 (94.27%), Query Frame = 1 
Query:    1 ERNDPKVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRIFLPGDVQVTMQMWDIGGQSIGSKMMSKYIFGAH---------AVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGIALSRPQLDAAGGVLSASIVNYRRHDEEVHGGELPDYTSRRPKTCTLS 654
            E N  KVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRI LPGDVQVTMQ+WDIGGQSIGSKMMSKYIFGAH         AVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAH+FADDNNMYTFFMSAKSGDQVDACFHRIAGHLSG+ALSRPQLDAAGGVLSASIVNYRRHDEEVHGGELPDYTSRRPKTCTLS
Sbjct:   96 EPNGSKVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRILLPGDVQVTMQVWDIGGQSIGSKMMSKYIFGAHVRSGGTGLIAVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHRFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGVALSRPQLDAAGGVLSASIVNYRRHDEEVHGGELPDYTSRRPKTCTLS 322
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BLAST of mRNA_Ecto-sp13_S_contig7267.18411.1 vs. uniprot
Match: A0A7S0HTS2_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HTS2_9EUKA)

HSP 1 Score: 263 bits (672), Expect = 4.960e-86
Identity = 118/212 (55.66%), Postives = 163/212 (76.89%), Query Frame = 1 
Query:   16 KVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRIFLPGDVQVTMQMWDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGIALSRPQLDAAGGVLSASIVNYRRHDEEVHGGELPDYTSRRPKTCTL 651
            KVILLGDG VGKTSIA RF +  F++ YKQTIG+DFF+KR+ LPG+V V +Q+WDIGGQ+IG KM+  YI+GA AV++CYDITNY SFQNL+DW+RLV +TF+   MPYV +VGNK DL+HMRAV+     QFAD+N+MY+F +SAK+GD V +CF+R+A  L+G+ L++P+L+ A  ++ A IVN+ +HD+E   G   + + ++   C +
Sbjct:   26 KVILLGDGAVGKTSIAMRFTEDHFAKAYKQTIGVDFFIKRLVLPGEVHVALQIWDIGGQTIGGKMIGNYIYGAQAVLLCYDITNYQSFQNLEDWFRLVRRTFQGSAMPYVTLVGNKTDLNHMRAVKAEKHSQFADENDMYSFLLSAKTGDNVSSCFYRLAADLAGVVLTKPELEIASKIVRAEIVNHPQHDQE---GASAESSGKKKGACVM 234
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BLAST of mRNA_Ecto-sp13_S_contig7267.18411.1 vs. uniprot
Match: A0A835YXE0_9STRA (Rab28, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXE0_9STRA)

HSP 1 Score: 263 bits (671), Expect = 6.370e-86
Identity = 128/221 (57.92%), Postives = 170/221 (76.92%), Query Frame = 1 
Query:    1 ERNDPKVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRIFLPGDVQVTMQMWDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGIALSRP---QLDAAGGVLSASIVNYRRHDEEVHGGELPDYTSRRPKTCTLS 654
            E+   K+ILLGDG VGKTSIA RFA+  FSQ YKQTIGLDFF+KRI LPGD+ V +Q+WDIGGQSIGSKM+  YI G+HAVI CYD+TN DSF +L+DW  LV+K+      P +A+ GNKCDLSH+RAVR+ + + FAD ++M  +FMSAKSGDQV+ACFHR+A  L+ ++LS+    +LD A  V++A IVN+ RHD  V+ GE+P++T +  ++C++S
Sbjct:   14 EQQQFKIILLGDGAVGKTSIANRFAKESFSQSYKQTIGLDFFIKRIVLPGDISVALQLWDIGGQSIGSKMLGNYIHGSHAVIFCYDVTNADSFLDLEDWRSLVMKSAADD-KPVMALAGNKCDLSHIRAVRSEAINTFADKHDMQVYFMSAKSGDQVNACFHRLAAQLAEVSLSKADLQRLDGAENVVTAEIVNHPRHDPNVNKGEVPEFT-KTGRSCSVS 232
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BLAST of mRNA_Ecto-sp13_S_contig7267.18411.1 vs. uniprot
Match: A0A7S0P625_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P625_9EUKA)

HSP 1 Score: 259 bits (662), Expect = 2.780e-84
Identity = 118/196 (60.20%), Postives = 158/196 (80.61%), Query Frame = 1 
Query:   16 KVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRIFLPGDVQVTMQMWDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGIALSRPQLDAAGGVLSASIVNYRRHDEEVHG 603
            KVILLGDG VGKTSIA RF +  F++ YKQTIGLDFF+KR+ LPGDV V +Q+WDIGGQ+IG KM+S YI+GA AV++CYDITNY++FQNL+DW+RLV +TF +G MPYV + GNK DL+HMRAV+    +QFA++N M T FMSAK+GD V +CF+++A  L+G+ LS+P+L+ A  ++ A IVN+ +  E++HG
Sbjct:   37 KVILLGDGAVGKTSIAMRFTEDHFAKTYKQTIGLDFFIKRLVLPGDVNVALQIWDIGGQTIGGKMISNYIYGAQAVLLCYDITNYETFQNLEDWFRLVRRTFSQGNMPYVVLAGNKTDLNHMRAVKLEKHNQFAEENEMITAFMSAKTGDAVSSCFYKVAADLAGVVLSKPELEVASKIVKAEIVNHPQ--EDLHG 230
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BLAST of mRNA_Ecto-sp13_S_contig7267.18411.1 vs. uniprot
Match: A0A7S1CBI3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CBI3_9STRA)

HSP 1 Score: 257 bits (657), Expect = 1.230e-83
Identity = 120/201 (59.70%), Postives = 157/201 (78.11%), Query Frame = 1 
Query:   16 KVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRIFLPGDVQVTMQMWDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGIALSRPQLDAAGGVLSASIVNYRRHDEEVHGGELPD 618
            KVILLGDG VGKTSIA RF    FS+MYKQTIGLDFF+KR+ LPGD+ V +Q+WDIGGQSIG KM+  YI+GA AV++CYD+TNY SFQNL+DWYRLV +T     MPYVA+VGNK DL+HMRAV+    + F+D+N+MY++FMSAK+GD V + F+RIA  L+G+ L++P+++    V+ A +VN++R+D  V   E PD
Sbjct:   25 KVILLGDGAVGKTSIAARFTNDYFSKMYKQTIGLDFFIKRLVLPGDIHVALQIWDIGGQSIGGKMIKNYIYGAQAVLLCYDVTNYASFQNLEDWYRLVQQTHAADAMPYVALVGNKTDLNHMRAVKLDKHNLFSDENDMYSYFMSAKTGDSVASSFYRIAADLAGVVLTKPEIEVESKVVKAELVNHQRNDPAV---EEPD 222
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BLAST of mRNA_Ecto-sp13_S_contig7267.18411.1 vs. uniprot
Match: A0A5D6Y7L2_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y7L2_9STRA)

HSP 1 Score: 255 bits (652), Expect = 3.880e-83
Identity = 121/212 (57.08%), Postives = 161/212 (75.94%), Query Frame = 1 
Query:   16 KVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRIFLPGDVQVTMQMWDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGIALSRPQLDAAGGVLSASIVNYRRHDEEVHGGELPDYTSRRPKTCTL 651
            KVI+LGDG VGKTS+A R  + +FS +YKQTIGLDFF+KR+ LPGD QVT+Q+WDIGGQSIG KM+  YIFGA AV++ YDIT+Y+SFQNL+DWYRLV +TF+   MPYV +VGNK DL+H+RAV+     QFA++N++ +FF+SAK+GDQV+A F ++A  L+GI LS+  LD    VL A IVN+ ++D +V   ++      +P  CTL
Sbjct:   17 KVIILGDGAVGKTSVAMRHTEDNFSNIYKQTIGLDFFLKRLALPGDTQVTLQIWDIGGQSIGGKMLKNYIFGAQAVLLVYDITSYESFQNLEDWYRLVRRTFDDEHMPYVGLVGNKIDLNHLRAVKAAKHKQFAEENDLKSFFVSAKTGDQVNATFRQVASDLAGIVLSKTDLDVETPVLKAQIVNHEQNDPDVKSVDM----RAKPSKCTL 224
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BLAST of mRNA_Ecto-sp13_S_contig7267.18411.1 vs. uniprot
Match: A0A2R5GAN9_9STRA (Ras-related protein Rab-28 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GAN9_9STRA)

HSP 1 Score: 255 bits (651), Expect = 3.790e-82
Identity = 119/213 (55.87%), Postives = 155/213 (72.77%), Query Frame = 1 
Query:   16 KVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRIFLPGDVQVTMQMWDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGIALSRPQLDAAGGVLSASIVNYRRHDEEVHGGELPDYTSRRPKTCTLS 654
            KVILLGDG+VGKTS ATRF QG F + YKQTIGLDFF+KR+ LPG++ V +Q+WDIGGQSIGSKM+S YI+GA A+++ YDITNY SF+NL+DW RLV K F +G MP+VA+V NKCDL H+R V     + FAD+N  Y++ +SAKSGD V   FHR+A  L+G+ L+RP+   A  V+ A I+++ + D EV+    P Y S     C +S
Sbjct:   75 KVILLGDGSVGKTSTATRFTQGHFKRTYKQTIGLDFFIKRLVLPGEINVALQIWDIGGQSIGSKMISNYIYGADAIVLMYDITNYQSFRNLEDWMRLVRKVFSEGPMPHVALVANKCDLEHVRTVTKEKHNDFADENEFYSYSLSAKSGDNVRGTFHRLAADLAGVTLTRPEFQVAHQVVKAEIIDHEKDDPEVNA---PSYASGSKSHCIIS 284
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BLAST of mRNA_Ecto-sp13_S_contig7267.18411.1 vs. uniprot
Match: A0A7S0LHF5_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LHF5_9EUKA)

HSP 1 Score: 253 bits (647), Expect = 4.770e-82
Identity = 115/191 (60.21%), Postives = 151/191 (79.06%), Query Frame = 1 
Query:   16 KVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRIFLPGDVQVTMQMWDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGIALSRPQLDAAGGVLSASIVNYRRHD 588
            KVILLGDG VGKTS+A RF +  F++ YKQTIGLDFF+KR+ LPG V + +Q+WDIGGQ+IG KM+  YI+GA AV++CYDITNY +FQNL+DWYRLV +TF +G MP+V ++GNK DL+HMRAV+     QFA++N+M T FMSAK+GD V +CF++IA  LSGI LS+P L+ A  ++ A IVN+ + D
Sbjct:   37 KVILLGDGAVGKTSVAMRFTEDHFAKTYKQTIGLDFFIKRLILPGGVNIALQIWDIGGQTIGGKMIQNYIYGAQAVLLCYDITNYQTFQNLEDWYRLVRRTFTQGTMPHVVLIGNKTDLNHMRAVKLEKHTQFAEENDMSTAFMSAKTGDAVTSCFYKIAAELSGIVLSKPDLEVASKIVKAEIVNHPQDD 227
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BLAST of mRNA_Ecto-sp13_S_contig7267.18411.1 vs. uniprot
Match: A0A813DPM1_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813DPM1_POLGL)

HSP 1 Score: 252 bits (643), Expect = 1.260e-81
Identity = 116/194 (59.79%), Postives = 155/194 (79.90%), Query Frame = 1 
Query:   16 KVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRIFLPGDVQVTMQMWDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQNLDDWYRLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMSAKSGDQVDACFHRIAGHLSGIALSRPQLDAAGGVLSASIVNYRRHDEEV 597
            KVILLGDG VGKTS+ATRF +  F++ YKQTIGLDFFVKR+ LPGDV V +Q+WDIGGQSIG KM+S YI G++AV++CYDITNY+SFQ+L+DW  LV +TF +  +PYVA++GNK DL+HMRAV+     QFAD+N++YT+F+SA++GDQV   F RIA  L+G+ L++P+L+ A     A +VN+ RHD ++
Sbjct:   25 KVILLGDGAVGKTSLATRFCEDHFAKQYKQTIGLDFFVKRVVLPGDVHVCLQIWDIGGQSIGGKMVSNYIHGSNAVVLCYDITNYESFQHLEDWLFLVKRTFGESPLPYVALMGNKHDLAHMRAVKVDKHTQFADENDLYTYFVSARTGDQVHPSFFRIAADLAGVTLTKPELEVAQKPTKAELVNHPRHDPDL 218
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7267.18411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE19_ECTSI7.960e-15497.25Rab28, Ras superfamily GTPase n=1 Tax=Ectocarpus s... [more]
A0A6H5JPJ9_9PHAE5.420e-15092.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0HTS2_9EUKA4.960e-8655.66Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A835YXE0_9STRA6.370e-8657.92Rab28, ras superfamily GTPase n=1 Tax=Tribonema mi... [more]
A0A7S0P625_9EUKA2.780e-8460.20Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S1CBI3_9STRA1.230e-8359.70Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A5D6Y7L2_9STRA3.880e-8357.08Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A2R5GAN9_9STRA3.790e-8255.87Ras-related protein Rab-28 n=1 Tax=Hondaea ferment... [more]
A0A7S0LHF5_9EUKA4.770e-8260.21Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A813DPM1_POLGL1.260e-8159.79Hypothetical protein n=2 Tax=Polarella glacialis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7267contigEcto-sp13_S_contig7267:4461..6787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score434.1
Seed ortholog evalue3.9e-119
Seed eggNOG ortholog2880.D8LE19
Preferred nameRAB40C
Model size657
KEGG koko:K07901,ko:K07915,ko:K07928,ko:K17199
KEGG Pathwayko04144,ko04152,ko04530,ko04972,map04144,map04152,map04530,map04972
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000131,GO:0000166,GO:0000910,GO:0001411,GO:0001882,GO:0001883,GO:0002790,GO:0003006,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005783,GO:0005886,GO:0005933,GO:0005934,GO:0005935,GO:0005937,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0006903,GO:0006904,GO:0006906,GO:0006914,GO:0006996,GO:0007049,GO:0007107,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009306,GO:0009653,GO:0009987,GO:0010927,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0017157,GO:0019001,GO:0019867,GO:0019953,GO:0022402,GO:0022406,GO:0022413,GO:0022414,GO:0022607,GO:0030133,GO:0030154,GO:0030427,GO:0030435,GO:0030437,GO:0031090,GO:0031321,GO:0031410,GO:0031521,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0032502,GO:0032505,GO:0032506,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032940,GO:0032989,GO:0032991,GO:0033036,GO:0034293,GO:0034613,GO:0035639,GO:0035690,GO:0036094,GO:0042221,GO:0042493,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043332,GO:0043934,GO:0043935,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0045184,GO:0046903,GO:0048193,GO:0048278,GO:0048284,GO:0048468,GO:0048646,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051234,GO:0051286,GO:0051301,GO:0051321,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0051716,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0070727,GO:0070887,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072657,GO:0072659,GO:0090174,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098805,GO:0098876,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:1901265,GO:1901363,GO:1903046,GO:1903530,GO:1990778
Exons5
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0078@1,KOG0078@2759
Ec32 ortholog descriptionRab28, Ras superfamily GTPase
Ec32 orthologEc-05_004380.1
Cds size657
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04031,ko04121,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.6056147-CDS-Ecto-sp13_S_contig7267:4460..46491681463994.6056147-CDS-Ecto-sp13_S_contig7267:4460..4649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7267 4461..4649 -
1681463994.6170704-CDS-Ecto-sp13_S_contig7267:4894..49981681463994.6170704-CDS-Ecto-sp13_S_contig7267:4894..4998Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7267 4895..4998 -
1681463994.625899-CDS-Ecto-sp13_S_contig7267:5467..55941681463994.625899-CDS-Ecto-sp13_S_contig7267:5467..5594Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7267 5468..5594 -
1681463994.6348732-CDS-Ecto-sp13_S_contig7267:5821..59101681463994.6348732-CDS-Ecto-sp13_S_contig7267:5821..5910Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7267 5822..5910 -
1681463994.6438267-CDS-Ecto-sp13_S_contig7267:6639..67871681463994.6438267-CDS-Ecto-sp13_S_contig7267:6639..6787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7267 6640..6787 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7267.18411.1prot_Ecto-sp13_S_contig7267.18411.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7267 4461..6787 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7267.18411.1

>prot_Ecto-sp13_S_contig7267.18411.1 ID=prot_Ecto-sp13_S_contig7267.18411.1|Name=mRNA_Ecto-sp13_S_contig7267.18411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=219bp
ERNDPKVILLGDGTVGKTSIATRFAQGDFSQMYKQTIGLDFFVKRIFLPG
DVQVTMQMWDIGGQSIGSKMMSKYIFGAHAVIMCYDITNYDSFQNLDDWY
RLVVKTFEKGVMPYVAMVGNKCDLSHMRAVRTTSAHQFADDNNMYTFFMS
AKSGDQVDACFHRIAGHLSGIALSRPQLDAAGGVLSASIVNYRRHDEEVH
GGELPDYTSRRPKTCTLS*
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mRNA from alignment at Ecto-sp13_S_contig7267:4461..6787-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7267.18411.1 ID=mRNA_Ecto-sp13_S_contig7267.18411.1|Name=mRNA_Ecto-sp13_S_contig7267.18411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7267:4461..6787- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACGGAACGATCCCAAGGTTATCCTCCTGGGAGACGGCACCGTGGGCAA
GACGTCGATCGCTACGAGGTTCGCACAGGGTGACTTCTCCCAGATGTACA
AACAGACAATCGGCTTGGACTTCTTTGTGAAGAGAATTTTTTTGCCAGGT
GGGAGGCTTGACCCTACTCTGAACGCTCTTCTTTGTACTACCTATGTTGC
GTGCTCCTGCCCGGAAATTAGTATCAATCGTCTTGAGGTTTGTGTGTCTG
CATTTTTATTTTCGTGTGCTAGCCGCTACTCTAGCAGAAACGTAAAAACA
TTTTCAGTGCTCGTGCCGGGAAGGAAGCAGGTTTACACCTACCAAGCGCG
TCATTGAAACTGGCATTAACCTTGATGTTGGTGGAGAGACAAAACGCGTT
GCTGGATTTCGTGAACGGGGCACACCTGTGACTCAATCTTCCACGTTTTC
ATGAGTTCGCTTTCATGATTCTCCATGATTCACCACGTAACACGATGCTT
CGGCCGACCTTGCACCTAGAGCTTCCTCCCCCTTGGGAATTGCCCAACCA
AAAAAATTGGCCCAAACGATGGTGGGAACCTTGAGATGCCGTCTGGGGTA
CCATTTTTCGGGAGGAACATTCTGCAGTACCGTCCTCTTTCATGGAGTTG
TTCGTTCGGATAATCAAGACTCGGCAGCCCGGGGGGGGGTATCGTAATCA
CATGCGGTTGTAGTTGTGGTAGAAACCCCGTCTCCCCCCCCGCGGATGAA
TCTGATGTATCCCCCCTTCCGCCCCTACTACAATTTTTCCAGAAGAGGGA
TAATTCTTGTGTGCTTCGGTGACAACATTTCAGCCCACACGACGTAACAG
TTTGCTTTTCCTCTCGTCATCGCGAAGGTGATGTTCAGGTGACCATGCAA
ATGTGGGACATCGGAGGGCAGAGCATCGGGAGCAAAATGATGTCCAAGTA
TATTTTTGGGGCACATGTGAGATCAGGGGGGATGGGTCTCATCGTATGCT
AGAATCCCCGTGGAATAAGTGGAACTACATTTTCTGTTTTGTGCGAAAGC
CTATCACACAGAGCATAGCTCCCACAACCGTCGACTCTCTAGGGTAGTGC
ACGGATGACTGCCCAACTCACAAACCTATGTTCCGCTCTACCGATACATA
CGACGACGCGACATGGGTTCCCCACCGTGCCCCGCCCTTTCAGGCAGTGA
TAATGTGCTACGACATCACCAATTACGACAGCTTCCAAAACCTGGATGAC
TGGTACCGGCTGGTTGTCAAAACCTTCGAGAAAGGGGTGATGCCGTACGT
GGCAATGGTTGGAAATAAATGTGAGCCGCGAAAGGGGGGTACTCAACAAG
CTGTATTGACTGCTCCTAGATAAAACATGGATCGACATGGATGCCATGGC
GAGTTGACAAGTTTGATTGGTGACATTTGGTTCTGCCTGCGATGAAAGGC
CTTTCAGTCGCGAACCACTCCGCTTCCTGGAGGTTCGTTGTCGTCCTCAA
GCGGTTTGATCGATCTATTGCCGTGCTCAGCGATGCGGATTGATCAACCA
CTCGGCCGATCGTGAACTGTTGGAATGGTGGGACTATCTGAAGGGAATGG
CTCTGGCCTTCTCCGCCCCTTCGAGAACAAGAATATTTCCTCTTACTCTC
GCTTTTTCTTCGCTAGCGCAGTTTCTGATCCCCCAGCTAGACTTCAAACC
ACGCTTCTGTCAAACGTGTAGCTGAGCACCACCAAACGTCTTTGCCTGCA
CCACCGTCGGATGGACGACTGCCGTGGACGCTGCTGCAGGCGACCTGAGT
CACATGCGAGCCGTGAGGACGACAAGCGCTCATCAGTTCGCCGACGACAA
CAACATGTACACCTTCTTCATGTCGGCTAAGTCAGGGGATCAGGTGCAGA
CGAACGAACGCGATACGCCATCACACATCAATCGAAATTTGTTTCAGCCC
CCTTGGCGTTCTCGCATGTTACCCTCGCTGGCTCGACGTCTATGCGTAAC
TCTATCGAGCTAGCCCTACCCATCGCTCTGCGCCTGTTTCTTGCTTTGTG
TCCGATGCCGACTACTTCAAACATGTCGCGATGTTGTACTCCAAATCGAC
ATGGATTAACGAAACCGTGCGTTTCCTATCAACTTCAGGTAGACGCGTGC
TTTCACCGAATAGCGGGCCATCTGTCAGGAATCGCTCTATCCAGACCACA
GCTTGACGCAGCTGGAGGAGTGCTAAGCGCGAGCATCGTCAACTACAGGC
GCCACGACGAAGAAGTGCACGGTGGCGAACTACCCGATTACACCTCTCGA
CGTCCCAAGACTTGCACACTGTCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7267:4461..6787-

>mRNA_Ecto-sp13_S_contig7267.18411.1 ID=mRNA_Ecto-sp13_S_contig7267.18411.1|Name=mRNA_Ecto-sp13_S_contig7267.18411.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7267:4461..6787- (Ectocarpus species13 EcNAP12_S_4_19m)
GAACGGAACGATCCCAAGGTTATCCTCCTGGGAGACGGCACCGTGGGCAA
GACGTCGATCGCTACGAGGTTCGCACAGGGTGACTTCTCCCAGATGTACA
AACAGACAATCGGCTTGGACTTCTTTGTGAAGAGAATTTTTTTGCCAGGT
GATGTTCAGGTGACCATGCAAATGTGGGACATCGGAGGGCAGAGCATCGG
GAGCAAAATGATGTCCAAGTATATTTTTGGGGCACATGCAGTGATAATGT
GCTACGACATCACCAATTACGACAGCTTCCAAAACCTGGATGACTGGTAC
CGGCTGGTTGTCAAAACCTTCGAGAAAGGGGTGATGCCGTACGTGGCAAT
GGTTGGAAATAAATGCGACCTGAGTCACATGCGAGCCGTGAGGACGACAA
GCGCTCATCAGTTCGCCGACGACAACAACATGTACACCTTCTTCATGTCG
GCTAAGTCAGGGGATCAGGTAGACGCGTGCTTTCACCGAATAGCGGGCCA
TCTGTCAGGAATCGCTCTATCCAGACCACAGCTTGACGCAGCTGGAGGAG
TGCTAAGCGCGAGCATCGTCAACTACAGGCGCCACGACGAAGAAGTGCAC
GGTGGCGAACTACCCGATTACACCTCTCGACGTCCCAAGACTTGCACACT
GTCGTGA
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