mRNA_Ecto-sp13_S_contig7267.18410.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7267.18410.1
Unique NamemRNA_Ecto-sp13_S_contig7267.18410.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7267.18410.1 vs. uniprot
Match: A0A6H5JGL4_9PHAE (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGL4_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 9.310e-80
Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 1 
Query:    1 RDAFTFAPKPLREGRVLRAMTRADVDGVVSLAFEEYYNGPMDFSAGIQGGLAVLESAWRSALRNGKFQEADKERLTDWLEMIWLRIMIQWGFSMREQFGKGGRDHRVFCISDEKARNLGGDGDGGS 378
            RDAFTFAPKPLREGRVLRAM RADVDGVV+LAFEEYYNGPMDFSAG++GG AVLESAWRSALRNGKFQEADKERLTDWLEMIWLRIMIQWGFSMREQFGKGGRDHRVFCISDEKA +LGGDGDGGS
Sbjct:  138 RDAFTFAPKPLREGRVLRAMKRADVDGVVNLAFEEYYNGPMDFSAGLRGGFAVLESAWRSALRNGKFQEADKERLTDWLEMIWLRIMIQWGFSMREQFGKGGRDHRVFCISDEKAGHLGGDGDGGS 263
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BLAST of mRNA_Ecto-sp13_S_contig7267.18410.1 vs. uniprot
Match: D8LE20_ECTSI (N-acetyltransferase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE20_ECTSI)

HSP 1 Score: 219 bits (557), Expect = 3.190e-70
Identity = 105/109 (96.33%), Postives = 107/109 (98.17%), Query Frame = 1 
Query:   58 MTRADVDGVVSLAFEEYYNGPMDFSAGIQGGLAVLESAWRSALRNGKFQEADKERLTDWLEMIWLRIMIQWGFSMREQFGKGGRDHRVFCISDEKARNLGGDGDGGSSK 384
            M RADVDGVVSLAFEEYYNGPMDFSAGI+GG AVLESAWRSALRNGKFQEADKERLTDWLEMIWLRIMIQWGFSMREQFGKGGRDHRVFCISDEKARNLGGDG+GGSSK
Sbjct:    1 MKRADVDGVVSLAFEEYYNGPMDFSAGIRGGFAVLESAWRSALRNGKFQEADKERLTDWLEMIWLRIMIQWGFSMREQFGKGGRDHRVFCISDEKARNLGGDGEGGSSK 109
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7267.18410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JGL4_9PHAE9.310e-8094.44N-acetyltransferase domain-containing protein n=1 ... [more]
D8LE20_ECTSI3.190e-7096.33N-acetyltransferase domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7267contigEcto-sp13_S_contig7267:200..2952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score220.3
Seed ortholog evalue5.1e-55
Seed eggNOG ortholog2880.D8LE20
Model size384
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2E7YR@1,2SEGS@2759
Cds size384
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.5327747-CDS-Ecto-sp13_S_contig7267:199..2661681463994.5327747-CDS-Ecto-sp13_S_contig7267:199..266Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7267 200..266 -
1681463994.5432494-CDS-Ecto-sp13_S_contig7267:1131..12151681463994.5432494-CDS-Ecto-sp13_S_contig7267:1131..1215Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7267 1132..1215 -
1681463994.5521984-CDS-Ecto-sp13_S_contig7267:2114..22551681463994.5521984-CDS-Ecto-sp13_S_contig7267:2114..2255Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7267 2115..2255 -
1681463994.5610614-CDS-Ecto-sp13_S_contig7267:2860..29521681463994.5610614-CDS-Ecto-sp13_S_contig7267:2860..2952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7267 2861..2952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7267.18410.1prot_Ecto-sp13_S_contig7267.18410.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7267 200..2952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7267.18410.1

>prot_Ecto-sp13_S_contig7267.18410.1 ID=prot_Ecto-sp13_S_contig7267.18410.1|Name=mRNA_Ecto-sp13_S_contig7267.18410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
RDAFTFAPKPLREGRVLRAMTRADVDGVVSLAFEEYYNGPMDFSAGIQGG
LAVLESAWRSALRNGKFQEADKERLTDWLEMIWLRIMIQWGFSMREQFGK
GGRDHRVFCISDEKARNLGGDGDGGSSK
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mRNA from alignment at Ecto-sp13_S_contig7267:200..2952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7267.18410.1 ID=mRNA_Ecto-sp13_S_contig7267.18410.1|Name=mRNA_Ecto-sp13_S_contig7267.18410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7267:200..2952- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGATGCCTTCACATTCGCCCCGAAGCCGCTGCGGGAAGGAAGAGTGCT
GCGAGCAATGACGCGAGCGGACGTCGATGGAGTCGTTAGCCTGTAAGTCG
TGTGCCGTGACGAAAAACTACATGTAATGTTTTGTACATGGACTGCAGCA
GTAGTGCAACGTGTGAAACGCACATGTGGTACAACATATTTGTGAAGCAC
TTCGAACGTATTTTAGTGCAGGCAGCGAGGCATCCTATCCATTCGACATG
CAGCAGAGGACCGCAGCCTGCAGATAGCTTTGCGGATTTTGACGCCCATG
GCCGGCATTCTGTATATGGTTACGAAGCTTGACCTGCCCACGCGCAGCAT
TCCTCACACATTGGCGCGGCACTTTGCAGCAGTTCAGCGGTTTCTGTCAA
CAAAGGGTCTTCGTTCTGCCCCCGAGTTGCCTACACAGCTCCTGGAGGAC
TTCCCGCGATGTCGAAAATGCCTTTGAACTTGCGTGCTACAGACGTGGGG
GATCATACGCGGACGTATCGGTTCACGGTTAAAACGGTGCCGAGATGCCG
TCAAGACGTTCGAACGCCACCCATGTCTGCTGCCTTATTCACCGTCAACC
GGGGTCTATTTCGTCCCGTGGTTCCTTCTTTCTCGTTACCGATCTCTGCC
TTCATCGATGTCGGCATCGGTTGTGCTCAACGTGTGCTCGCTTCCAGAGC
ATTCGAGGAGTACTACAACGGGCCCATGGATTTTTCCGCCGGCATCCAGG
GAGGACTTGCCGTGTTGGAGTCGGCGTGGCGAAGCGCACTTCGGAACGGG
AAGTTCCAAGAGGCGGACAAGGAACGGCTGACCGACTGGTACGTACCGTT
GTAGATTAGAGAGCACTTCTCGCTAACCTGCTGTGTAACTTTACCGCTCT
CTGTCTCCCTTTTTGCGTATCCCCGTATGTCTCTTACAGCTCTCTCTCTC
TCTCTTTCTTCCTCTGCATATCCCTGTCATTCTCCACCTAAAGTTGTAGA
AGTTTCTCGTTGGCATTGGTGCTGCGTGCACAGGAGCAGGGGACGCTGCT
GCTATGCGAAGAAACGATATTGTACGTCTTGAGTGCCACTTTTTTGTGTA
CGGGCCAGAAGCTCGGAGCCCCACGACTTGAAAACGGATGTTGAACCGTT
AACTGTCCTCATGGGAGGGAGCAGCTGCCGTCGAGCTTGCCCAAAACCGC
ATGTCAAGTTCCAATAAGTGTATCAAATATGTAACGTCGAGCCCCGGTCA
GACAGTGGCCTCTGAGTCTTCCAGGAGTAAGCGGTTGGGAATCGATGGCA
GGGGCATCGGGCGATCTCTACAAGTCTCCTCCTGGGAAGCTGGGGGACGG
TACCTCCAAAAGTGCCCCTCTGATGAGAACGAGGAGGGGGGGGGGGGGGG
GGGGGAGGGGCACCGTAGGCTGCATTGATCGTACCTCAAGGAATAAGCAT
GAAGTTAGACCATGAATCCCCTCGTGCTGCCCTTCTCGACGTCATCATCC
CCGCCTTCCACCCCACCTCCAAGGTTGTCTCAGGCCCCCGCCAGGGGTCG
AAGAAGCGGCCAAGGGGCCGAGGAAATATTTTAGCAGTATGCAAACGTAC
GCGGAAATGGTCAAAAAGCCACCTCAGCAGCTTATGAAATGTGGTCCCCT
TAATCCGGCATCTCCATCACCCCGTCCCTTTTGTACGTACGGCTCCCTCC
GTCACCCACTACTCCCCGGGGGGGAACTGCTCATCAGGTTGGAGATGATT
TGGCTGCGGATCATGATACAGTGGGGGTTTAGCATGCGTGAACAATTCGG
GAAGGGTGGGCGCGATCACAGGTGTGCATATCTTCGCTCAGCACTGTGTA
CTGTATTATATGATGTTTTTTTAACTGTTATGATGCTGGCACGTGCCAGT
AAAAGCCGCTAACCCTACCCTAGCGTTTAGGTTCAACCAGGCGGGGCATT
TATTGGCCTGGTCTCAGGTGACTCGCCCCAATGATGAATCGACAGGCCAG
GATGAGCAGCACACGTGGATGGGCATCAATCCACCTTCAACCTATGTTGT
CTTTAATAACGCCATCGATGGGCTGTGTTGTGTACTGAAGGAGTGCACGC
AACGGAACGAGGTGGTACGCTCCGCCCAACGCTCCTTGCCTTGTGGCCGC
ATAGTGTTAGGTACAGGGTTGTGCCATCGCGATGATATGTGGATGCATCT
TCGTCGGCCGTACTAACAAGCGTTTCGTGCACCGTAAAACCGCCACAAAC
GGAAGTTCTACAACAGGTGGCACCTTAGTTTCGGCGTCGCCCCTAGCATC
CACGCGGCGTTGGCCACACCAACTCGTGCGGACGGACATGTCAGGGGTTC
TATCAAAGACTATCGTCTGTGTAGACCACAGAAATCGTTTCTTGATGTAT
ACCCGTCGGTTTACGACGGGACGAGAACAAGTTACTAAGGTGTGTTGTTT
GGGATGGAGAGATACCAACAGCGAAGCCGGCGACAACGAAAGCAGTGATT
CCCTTGAAAAGAGACGTCCAGACGTCTAACTCTTTCTCCGTCTGGCTTTG
AGCTTGTTGCCGATATTTTGTTCCATGAAGACTACGATGGCTTTTTGGAA
AGTCACGACAAGACACAAACATGCCGTTTCAATTTTGTCTTCGACGACTC
CCCGCCCGCCCCGTTGGTTTTGTCTTTCTACCAAAGGGTGTTCTGCATCT
CCGACGAGAAGGCTAGGAATTTAGGAGGCGACGGGGACGGCGGCTCCTCC
AAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7267:200..2952-

>mRNA_Ecto-sp13_S_contig7267.18410.1 ID=mRNA_Ecto-sp13_S_contig7267.18410.1|Name=mRNA_Ecto-sp13_S_contig7267.18410.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7267:200..2952- (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGATGCCTTCACATTCGCCCCGAAGCCGCTGCGGGAAGGAAGAGTGCT
GCGAGCAATGACGCGAGCGGACGTCGATGGAGTCGTTAGCCTAGCATTCG
AGGAGTACTACAACGGGCCCATGGATTTTTCCGCCGGCATCCAGGGAGGA
CTTGCCGTGTTGGAGTCGGCGTGGCGAAGCGCACTTCGGAACGGGAAGTT
CCAAGAGGCGGACAAGGAACGGCTGACCGACTGGTTGGAGATGATTTGGC
TGCGGATCATGATACAGTGGGGGTTTAGCATGCGTGAACAATTCGGGAAG
GGTGGGCGCGATCACAGGGTGTTCTGCATCTCCGACGAGAAGGCTAGGAA
TTTAGGAGGCGACGGGGACGGCGGCTCCTCCAAG
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