mRNA_Ecto-sp13_S_contig72664.18409.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72664.18409.1
Unique NamemRNA_Ecto-sp13_S_contig72664.18409.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig72664.18409.1 vs. uniprot
Match: A0A6H5KY11_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KY11_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 5.730e-41
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 1
Query:    1 KRVFRERLEETKRHALAGGGDARLERQHSRGKLSARERLEVLLDPGSFREYDMLKTHRCTDFGMEKNLVPGDGVVRASAE 240
            KRVFRE+LEETKRHALAGGGDARLERQHSRGKLSARERL+VLLDPGSFREYDMLKTHRCTDFGMEK+LVPGDGVV    E
Sbjct:   29 KRVFREQLEETKRHALAGGGDARLERQHSRGKLSARERLDVLLDPGSFREYDMLKTHRCTDFGMEKDLVPGDGVVTGRGE 108          
BLAST of mRNA_Ecto-sp13_S_contig72664.18409.1 vs. uniprot
Match: A0A2P4XJF7_9STRA (Propionyl-CoA carboxylase beta chain, mitochondrial (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XJF7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.210e-27
Identity = 47/75 (62.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 KRVFRERLEETKRHALAGGGDARLERQHSRGKLSARERLEVLLDPGSFREYDMLKTHRCTDFGMEKNLVPGDGVV 225
            K  F++ LE+ ++ AL GGG  R+  QH++GKL+ARER+E+LLD G+FREYDMLK+HRC+DFGMEK   PGDGVV
Sbjct:   18 KLAFKDELEQARKRALEGGGAKRVANQHAKGKLTARERIELLLDKGTFREYDMLKSHRCSDFGMEKQQYPGDGVV 92          
BLAST of mRNA_Ecto-sp13_S_contig72664.18409.1 vs. uniprot
Match: A0A485L1X9_9STRA (Aste57867_14928 protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A485L1X9_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.990e-26
Identity = 52/75 (69.33%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 KRVFRERLEETKRHALAGGGDARLERQHSRGKLSARERLEVLLDPGSFREYDMLKTHRCTDFGMEKNLVPGDGVV 225
            K  F+++LEET++ AL GGG  R E QH++GKL+ARERLE+LLD GSFREYDMLKTHRC DFGMEK   PGDGV+
Sbjct:   21 KLAFKKKLEETRQKALLGGGAKRQEAQHNKGKLTARERLELLLDEGSFREYDMLKTHRCKDFGMEKQEYPGDGVI 95          
BLAST of mRNA_Ecto-sp13_S_contig72664.18409.1 vs. uniprot
Match: A0A397AT33_9STRA (CoA carboxyltransferase N-terminal domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AT33_9STRA)

HSP 1 Score: 106 bits (264), Expect = 2.720e-26
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 KRVFRERLEETKRHALAGGGDARLERQHSRGKLSARERLEVLLDPGSFREYDMLKTHRCTDFGMEKNLVPGDGVV 225
            K  F+++L+ET+  AL GGG  R E QH +GKLSARERLE+LLD G+FREYDMLKTHRC DFGME    PGDGVV
Sbjct:   21 KLAFKKKLDETRAQALLGGGIKRQEAQHKKGKLSARERLELLLDEGTFREYDMLKTHRCKDFGMEAQQYPGDGVV 95          
BLAST of mRNA_Ecto-sp13_S_contig72664.18409.1 vs. uniprot
Match: A0A662XUK0_9STRA (CoA carboxyltransferase N-terminal domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUK0_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.510e-25
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 1
Query:    1 KRVFRERLEETKRHALAGGGDARLERQHSRGKLSARERLEVLLDPGSFREYDMLKTHRCTDFGMEKNLVPGDGVV 225
            K  F++ L   ++ AL GGG  R+ +QH +GKL+ARER+E+L+D G+FREYDMLKTHRC+DFGME    PGDGVV
Sbjct:   18 KLAFQDELARARKQALEGGGAKRVAKQHEKGKLTARERIELLVDQGTFREYDMLKTHRCSDFGMESQQYPGDGVV 92          
BLAST of mRNA_Ecto-sp13_S_contig72664.18409.1 vs. uniprot
Match: A0A7S3HLN0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLN0_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.530e-25
Identity = 50/75 (66.67%), Postives = 57/75 (76.00%), Query Frame = 1
Query:    1 KRVFRERLEETKRHALAGGGDARLERQHSRGKLSARERLEVLLDPGSFREYDMLKTHRCTDFGMEKNLVPGDGVV 225
            K  FR RLE+ +  AL GGG  R++ QH RGKL+ARERL +LLD GSFREYDMLKTHRC +FGMEK    GDGVV
Sbjct:   36 KTAFRARLEKAREAALLGGGQKRIDTQHQRGKLTARERLSLLLDDGSFREYDMLKTHRCDEFGMEKEKYYGDGVV 110          
BLAST of mRNA_Ecto-sp13_S_contig72664.18409.1 vs. uniprot
Match: A0A6A5APU2_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5APU2_9STRA)

HSP 1 Score: 106 bits (264), Expect = 3.380e-25
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 KRVFRERLEETKRHALAGGGDARLERQHSRGKLSARERLEVLLDPGSFREYDMLKTHRCTDFGMEKNLVPGDGVV 225
            K  F+++L+ET+  AL GGG  R E QH +GKLSARERLE+LLD G+FREYDMLKTHRC DFGME    PGDGVV
Sbjct:   39 KLAFKKKLDETRAQALLGGGIKRQEAQHKKGKLSARERLELLLDEGTFREYDMLKTHRCKDFGMEAQQYPGDGVV 113          
BLAST of mRNA_Ecto-sp13_S_contig72664.18409.1 vs. uniprot
Match: A0A3R6WR59_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6WR59_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.920e-25
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:    1 KRVFRERLEETKRHALAGGGDARLERQHSRGKLSARERLEVLLDPGSFREYDMLKTHRCTDFGMEKNLVPGDGVV 225
            K  F+++L+ET+  AL GGG  R E QH +GKLSARERLE+LLD G+FREYDMLKTHRC DFGME    PGDGVV
Sbjct:   21 KLAFKKKLDETRAQALLGGGIKRQEAQHKKGKLSARERLELLLDEGTFREYDMLKTHRCKDFGMEAQQYPGDGVV 95          
BLAST of mRNA_Ecto-sp13_S_contig72664.18409.1 vs. uniprot
Match: W7T2I2_9STRA (Carboxyl transferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T2I2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.490e-25
Identity = 49/75 (65.33%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 KRVFRERLEETKRHALAGGGDARLERQHSRGKLSARERLEVLLDPGSFREYDMLKTHRCTDFGMEKNLVPGDGVV 225
            K  FR RLE+ +  AL GGG+ R+ +QH++GKL+ARERL +LLD G+FRE DMLKTHRCTDFGM+K + PGDGVV
Sbjct:   54 KNAFRVRLEDERAKALQGGGEKRVAKQHAKGKLTARERLSLLLDEGTFRESDMLKTHRCTDFGMQKEVYPGDGVV 128          
BLAST of mRNA_Ecto-sp13_S_contig72664.18409.1 vs. uniprot
Match: A0A3M2E268_9PROT (CoA carboxyltransferase N-terminal domain-containing protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3M2E268_9PROT)

HSP 1 Score: 98.2 bits (243), Expect = 8.000e-25
Identity = 44/70 (62.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:   16 ERLEETKRHALAGGGDARLERQHSRGKLSARERLEVLLDPGSFREYDMLKTHRCTDFGMEKNLVPGDGVV 225
            E LE+ + +A  GGG+ R+  QH++GKL+ARER+EVLLD GSF E+DM  THRCTDFGME+  +PGDGVV
Sbjct:    6 EELEQRRANARLGGGERRIAAQHAKGKLTARERIEVLLDEGSFEEFDMFVTHRCTDFGMERTKIPGDGVV 75          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72664.18409.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY11_9PHAE5.730e-4191.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2P4XJF7_9STRA1.210e-2762.67Propionyl-CoA carboxylase beta chain, mitochondria... [more]
A0A485L1X9_9STRA1.990e-2669.33Aste57867_14928 protein n=5 Tax=Aphanomyces TaxID=... [more]
A0A397AT33_9STRA2.720e-2668.00CoA carboxyltransferase N-terminal domain-containi... [more]
A0A662XUK0_9STRA1.510e-2560.00CoA carboxyltransferase N-terminal domain-containi... [more]
A0A7S3HLN0_9STRA1.530e-2566.67Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A6A5APU2_9STRA3.380e-2568.00Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A3R6WR59_9STRA5.920e-2568.00Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
W7T2I2_9STRA7.490e-2565.33Carboxyl transferase n=2 Tax=Monodopsidaceae TaxID... [more]
A0A3M2E268_9PROT8.000e-2562.86CoA carboxyltransferase N-terminal domain-containi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72664contigEcto-sp13_S_contig72664:417..662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score105.9
Seed ortholog evalue9e-21
Seed eggNOG ortholog157072.XP_008870869.1
Model size246
KEGG rclassRC00097,RC00367,RC00609,RC00942
KEGG koko:K01966,ko:K01969
KEGG ReactionR01859,R04138
KEGG Pathwayko00280,ko00630,ko00640,ko01100,ko01120,ko01130,ko01200,map00280,map00630,map00640,map01100,map01120,map01130,map01200
KEGG ModuleM00036,M00373,M00741
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.CoA carboxylase activity
EggNOG OGsCOG4799@1,KOG0540@2759
EC2.1.3.15,6.4.1.3,6.4.1.4
Cds size246
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.5047226-CDS-Ecto-sp13_S_contig72664:416..6621681463994.5047226-CDS-Ecto-sp13_S_contig72664:416..662Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72664 417..662 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72664.18409.1prot_Ecto-sp13_S_contig72664.18409.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72664 417..662 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72664.18409.1

>prot_Ecto-sp13_S_contig72664.18409.1 ID=prot_Ecto-sp13_S_contig72664.18409.1|Name=mRNA_Ecto-sp13_S_contig72664.18409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
KRVFRERLEETKRHALAGGGDARLERQHSRGKLSARERLEVLLDPGSFRE
YDMLKTHRCTDFGMEKNLVPGDGVVRASAER*
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mRNA from alignment at Ecto-sp13_S_contig72664:417..662+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72664.18409.1 ID=mRNA_Ecto-sp13_S_contig72664.18409.1|Name=mRNA_Ecto-sp13_S_contig72664.18409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72664:417..662+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCGAGTGTTTCGAGAGCGGCTGGAGGAAACGAAGCGCCACGCGCTGGC GGGGGGGGGCGACGCCCGCCTGGAGCGCCAGCACTCGAGGGGAAAGCTGT CGGCGAGAGAGAGGCTGGAAGTGCTGCTGGACCCGGGGTCTTTCCGTGAG TACGACATGCTCAAAACGCACCGCTGCACGGACTTCGGCATGGAGAAGAA CCTGGTGCCGGGGGATGGTGTGGTGAGAGCGAGTGCGGAACGTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72664:417..662+

>mRNA_Ecto-sp13_S_contig72664.18409.1 ID=mRNA_Ecto-sp13_S_contig72664.18409.1|Name=mRNA_Ecto-sp13_S_contig72664.18409.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72664:417..662+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGCGAGTGTTTCGAGAGCGGCTGGAGGAAACGAAGCGCCACGCGCTGGC
GGGGGGGGGCGACGCCCGCCTGGAGCGCCAGCACTCGAGGGGAAAGCTGT
CGGCGAGAGAGAGGCTGGAAGTGCTGCTGGACCCGGGGTCTTTCCGTGAG
TACGACATGCTCAAAACGCACCGCTGCACGGACTTCGGCATGGAGAAGAA
CCTGGTGCCGGGGGATGGTGTGGTGAGAGCGAGTGCGGAACGTTGA
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