mRNA_Ecto-sp13_S_contig7265.18408.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7265.18408.1
Unique NamemRNA_Ecto-sp13_S_contig7265.18408.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7265.18408.1 vs. uniprot
Match: D7G8F1_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F1_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 5.880e-40
Identity = 88/101 (87.13%), Postives = 91/101 (90.10%), Query Frame = 1 
Query:    1 REPPQGPLAMPWPTCKGPSRLSYGSTPVQHPGDGAFVGFDAIFGCNGAVFSVSKADDASGGIPAAASSLGGGATGGTGRGMADAQAXXXXXXXXLRSARFE 303
            REPPQG LAMPWPTCKGPSRLSYGSTPVQHPG GAF GFDAIFGCNGAV SVS ADDASGG+PAAA+SLGGGATGG GRGM DAQAXXXXXXXX  SAR +
Sbjct:  364 REPPQGSLAMPWPTCKGPSRLSYGSTPVQHPGGGAFGGFDAIFGCNGAVSSVSTADDASGGVPAAAASLGGGATGGAGRGMTDAQAXXXXXXXXXXSARVD 464
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7265.18408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8F1_ECTSI5.880e-4087.13Putative NIN-like transcription factor n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7265contigEcto-sp13_S_contig7265:5148..5765 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size618
Hectar predicted targeting categoryother localisation
Exons1
Cds size591
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.4604406-UTR-Ecto-sp13_S_contig7265:5147..51741681463994.4604406-UTR-Ecto-sp13_S_contig7265:5147..5174Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7265 5148..5174 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.4724085-CDS-Ecto-sp13_S_contig7265:5174..57651681463994.4724085-CDS-Ecto-sp13_S_contig7265:5174..5765Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7265 5175..5765 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7265.18408.1prot_Ecto-sp13_S_contig7265.18408.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7265 5175..5765 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7265.18408.1

>prot_Ecto-sp13_S_contig7265.18408.1 ID=prot_Ecto-sp13_S_contig7265.18408.1|Name=mRNA_Ecto-sp13_S_contig7265.18408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
MPWPTCKGPSRLSYGSTPVQHPGDGAFVGFDAIFGCNGAVFSVSKADDAS
GGIPAAASSLGGGATGGTGRGMADAQAGVAEAQAGLRSARFEELCALDRL
LFGDRSLSPPAAATAAVAAAAPGTVAASAVAATAASGSCAAGRLSDIARR
TTGCANGATNLNPESAASAFLGRVGDKASSPAHVGADPWRVDATRQ*
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mRNA from alignment at Ecto-sp13_S_contig7265:5148..5765+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7265.18408.1 ID=mRNA_Ecto-sp13_S_contig7265.18408.1|Name=mRNA_Ecto-sp13_S_contig7265.18408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7265:5148..5765+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAGAGCCGCCCCAAGGGCCCCTTGCAATGCCGTGGCCAACATGCAAGGG
TCCAAGCCGGCTCTCGTACGGCAGCACTCCTGTGCAGCACCCGGGGGACG
GAGCTTTTGTCGGCTTCGACGCGATCTTCGGCTGCAACGGCGCCGTTTTT
TCTGTTTCCAAGGCGGACGATGCCTCGGGCGGTATTCCCGCCGCTGCTTC
TTCTCTGGGAGGCGGGGCGACCGGCGGCACCGGGAGAGGCATGGCGGACG
CACAGGCAGGAGTAGCGGAGGCACAAGCAGGGCTGAGGAGCGCCAGGTTC
GAGGAGCTGTGCGCGCTGGACAGGCTTCTGTTCGGCGACAGGAGTTTGTC
GCCCCCTGCTGCCGCTACTGCTGCTGTTGCCGCCGCTGCTCCTGGTACCG
TTGCTGCTTCTGCGGTCGCGGCCACCGCCGCTTCTGGCTCCTGTGCCGCC
GGCCGCCTTTCCGACATAGCTAGGAGGACCACTGGGTGCGCCAACGGCGC
TACAAACCTGAATCCTGAGTCTGCTGCTTCTGCTTTTCTCGGTAGGGTTG
GTGATAAAGCCTCTTCCCCCGCGCACGTCGGCGCTGATCCGTGGAGAGTC
GATGCTACCCGGCAATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7265:5148..5765+

>mRNA_Ecto-sp13_S_contig7265.18408.1 ID=mRNA_Ecto-sp13_S_contig7265.18408.1|Name=mRNA_Ecto-sp13_S_contig7265.18408.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7265:5148..5765+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTGGCCAACATGCAAGGGTCCAAGCCGGCTCTCGTACGGCAGCAC
TCCTGTGCAGCACCCGGGGGACGGAGCTTTTGTCGGCTTCGACGCGATCT
TCGGCTGCAACGGCGCCGTTTTTTCTGTTTCCAAGGCGGACGATGCCTCG
GGCGGTATTCCCGCCGCTGCTTCTTCTCTGGGAGGCGGGGCGACCGGCGG
CACCGGGAGAGGCATGGCGGACGCACAGGCAGGAGTAGCGGAGGCACAAG
CAGGGCTGAGGAGCGCCAGGTTCGAGGAGCTGTGCGCGCTGGACAGGCTT
CTGTTCGGCGACAGGAGTTTGTCGCCCCCTGCTGCCGCTACTGCTGCTGT
TGCCGCCGCTGCTCCTGGTACCGTTGCTGCTTCTGCGGTCGCGGCCACCG
CCGCTTCTGGCTCCTGTGCCGCCGGCCGCCTTTCCGACATAGCTAGGAGG
ACCACTGGGTGCGCCAACGGCGCTACAAACCTGAATCCTGAGTCTGCTGC
TTCTGCTTTTCTCGGTAGGGTTGGTGATAAAGCCTCTTCCCCCGCGCACG
TCGGCGCTGATCCGTGGAGAGTCGATGCTACCCGGCAATAG
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