mRNA_Ecto-sp13_S_contig72637.18407.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72637.18407.1
Unique NamemRNA_Ecto-sp13_S_contig72637.18407.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72637.18407.1 vs. uniprot
Match: A0A6H5JBR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBR4_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.780e-9
Identity = 42/51 (82.35%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:  208 EANGVPAALAQPGGEGDQXXXPVWEEXXXXXXXXXPEDVEPPAWMVELESA 360
            E NGV AAL QPGGEGDQ    VWEE XXXXXXX PEDVEPPAWMVELESA
Sbjct:  482 EGNGVSAALVQPGGEGDQQQL-VWEEQXXXXXXXEPEDVEPPAWMVELESA 531
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72637.18407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JBR4_9PHAE1.780e-982.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72637contigEcto-sp13_S_contig72637:2..403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size403
Hectar predicted targeting categoryother localisation
Exons1
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.4217901-UTR-Ecto-sp13_S_contig72637:1..221681463994.4217901-UTR-Ecto-sp13_S_contig72637:1..22Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig72637 2..22 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.4345648-CDS-Ecto-sp13_S_contig72637:22..4031681463994.4345648-CDS-Ecto-sp13_S_contig72637:22..403Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72637 23..403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72637.18407.1prot_Ecto-sp13_S_contig72637.18407.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72637 23..403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72637.18407.1

>prot_Ecto-sp13_S_contig72637.18407.1 ID=prot_Ecto-sp13_S_contig72637.18407.1|Name=mRNA_Ecto-sp13_S_contig72637.18407.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=127bp
MAKLESATLVQPGGEGDQQQEPMWEEQQPQQEQQQGVDIAPEGYLQQPGL
LLDLQQQEQDQAEANGVPAALAQPGGEGDQQQQPVWEEQEQQQEQQEPED
VEPPAWMVELESATLVKPGGEGDQQQE
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mRNA from alignment at Ecto-sp13_S_contig72637:2..403+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72637.18407.1 ID=mRNA_Ecto-sp13_S_contig72637.18407.1|Name=mRNA_Ecto-sp13_S_contig72637.18407.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72637:2..403+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATGTGGAGCCCCCTGCATGGATGGCGAAGCTCGAGTCAGCAACGTTGGT
GCAGCCCGGCGGGGAGGGAGATCAGCAGCAAGAACCGATGTGGGAGGAGC
AACAGCCGCAGCAAGAGCAGCAGCAGGGGGTAGATATTGCGCCTGAAGGG
TATTTGCAGCAGCCCGGGTTACTGCTGGACCTGCAGCAGCAGGAGCAGGA
TCAGGCGGAGGCAAACGGTGTCCCAGCAGCGTTGGCGCAGCCCGGCGGAG
AGGGAGATCAGCAGCAACAACCGGTGTGGGAGGAGCAAGAGCAGCAGCAA
GAGCAGCAGGAACCGGAAGATGTGGAGCCCCCTGCATGGATGGTGGAGCT
CGAGTCAGCAACGTTGGTGAAGCCTGGTGGAGAAGGAGATCAGCAGCAAG
AA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72637:2..403+

>mRNA_Ecto-sp13_S_contig72637.18407.1 ID=mRNA_Ecto-sp13_S_contig72637.18407.1|Name=mRNA_Ecto-sp13_S_contig72637.18407.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72637:2..403+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAAGCTCGAGTCAGCAACGTTGGTGCAGCCCGGCGGGGAGGGAGA
TCAGCAGCAAGAACCGATGTGGGAGGAGCAACAGCCGCAGCAAGAGCAGC
AGCAGGGGGTAGATATTGCGCCTGAAGGGTATTTGCAGCAGCCCGGGTTA
CTGCTGGACCTGCAGCAGCAGGAGCAGGATCAGGCGGAGGCAAACGGTGT
CCCAGCAGCGTTGGCGCAGCCCGGCGGAGAGGGAGATCAGCAGCAACAAC
CGGTGTGGGAGGAGCAAGAGCAGCAGCAAGAGCAGCAGGAACCGGAAGAT
GTGGAGCCCCCTGCATGGATGGTGGAGCTCGAGTCAGCAACGTTGGTGAA
GCCTGGTGGAGAAGGAGATCAGCAGCAAGAA
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