mRNA_Ecto-sp13_S_contig7262.18405.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7262.18405.1
Unique NamemRNA_Ecto-sp13_S_contig7262.18405.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7262.18405.1 vs. uniprot
Match: A0A6H5JZC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC0_9PHAE)

HSP 1 Score: 258 bits (659), Expect = 7.930e-77
Identity = 158/184 (85.87%), Postives = 160/184 (86.96%), Query Frame = 1 
Query:    1 PRRKSGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEATPGRRRVRLSADVRGYLCPRDEGRLLRSGLVTSSIKIGAERHSVEAI-----VLVLDRKYRGPAVAVEAGPGDAVRMAATSASLARQGAXXXXXXXXXXXXXXXXQGAVEDHRGSDERETGGDAGRGTERTTAHTGGDALGE 537
            P R SGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEATPGRRRVRLSADVRGYLCPRDEGRLLRSGLVTSSIKIGAERHSVEAI     VLVLDRKYRGPAVA E GPGDA RM A SASL R    XXXXXXXXXXXXXXXQGAV+DH GSDERE GGDAGR  ERTT H+ GDAL E
Sbjct:  851 PTRISGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEATPGRRRVRLSADVRGYLCPRDEGRLLRSGLVTSSIKIGAERHSVEAITGDGTVLVLDRKYRGPAVATEPGPGDAARMTAASASLPRHNGAXXXXXXXXXXXXXXXQGAVKDHHGSDEREPGGDAGREAERTTVHSEGDALHE 1034
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7262.18405.1 vs. uniprot
Match: D7FXV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV0_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 1.510e-24
Identity = 77/179 (43.02%), Postives = 78/179 (43.58%), Query Frame = 1 
Query:    1 PRRKSGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEATPGRRRVRLSADVRGYLCPRDEGRLLRSGLVTSSIKIGAERHSVEAIVLVLDRKYRGPAVAVEAGPGDAVRMAATSASLARQGAXXXXXXXXXXXXXXXXQGAVEDHRGSDERETGGDAGRGTERTTAHTGGDALGE 537
            PRRKSGLRPGRGWEIGAAGGGGF LEES GYDLCLPVGVVEA PGRRR                                                                                               G VEDHRGSDERET GDAGRGTERTTAH+GGDAL E
Sbjct:  647 PRRKSGLRPGRGWEIGAAGGGGFLLEESEGYDLCLPVGVVEANPGRRR-----------------------------------------------------------------------------------------------GTVEDHRGSDERETCGDAGRGTERTTAHSGGDALDE 730
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7262.18405.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZC0_9PHAE7.930e-7785.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXV0_ECTSI1.510e-2443.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7262contigEcto-sp13_S_contig7262:4301..4856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size541
Hectar predicted targeting categoryother localisation
Exons2
Cds size540
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.3493018-CDS-Ecto-sp13_S_contig7262:4300..45671681463994.3493018-CDS-Ecto-sp13_S_contig7262:4300..4567Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7262 4301..4567 +
1681463994.3593276-CDS-Ecto-sp13_S_contig7262:4582..48551681463994.3593276-CDS-Ecto-sp13_S_contig7262:4582..4855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7262 4583..4855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7262.18405.1prot_Ecto-sp13_S_contig7262.18405.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7262 4301..4855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7262.18405.1

>prot_Ecto-sp13_S_contig7262.18405.1 ID=prot_Ecto-sp13_S_contig7262.18405.1|Name=mRNA_Ecto-sp13_S_contig7262.18405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=180bp
PRRKSGLRPGRGWEIGAAGGGGFRLEESGGYDLCLPVGVVEATPGRRRVR
LSADVRGYLCPRDEGRLLRSGLVTSSIKIGAERHSVEAIVLVLDRKYRGP
AVAVEAGPGDAVRMAATSASLARQGAAAAASSSAASSPDGGGQGAVEDHR
GSDERETGGDAGRGTERTTAHTGGDALGEA
back to top

mRNA from alignment at Ecto-sp13_S_contig7262:4301..4856+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7262.18405.1 ID=mRNA_Ecto-sp13_S_contig7262.18405.1|Name=mRNA_Ecto-sp13_S_contig7262.18405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=556bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7262:4301..4856+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCAGGAGGAAGTCCGGGCTTAGGCCCGGTCGCGGGTGGGAGATCGGGGC
CGCCGGGGGCGGCGGCTTCCGGCTGGAGGAGTCCGGGGGCTACGACCTGT
GTCTTCCCGTGGGGGTCGTGGAGGCGACCCCGGGACGTCGCAGGGTGAGG
CTCTCGGCGGACGTGCGGGGCTACCTGTGCCCGCGCGACGAGGGGCGGCT
GCTGAGGAGCGGCCTGGTGACGTCGTCTATCAAGATCGGGGCGGAGAGGC
ACTCGGTGGAGGCGATCACCGGCGACGGCACGGTGCTGGTTCTGGACCGG
AAGTACCGGGGGCCGGCCGTGGCCGTCGAAGCGGGGCCCGGGGATGCAGT
GCGGATGGCAGCGACTTCGGCGTCCTTGGCGCGGCAAGGTGCTGCTGCTG
CGGCTTCTTCTTCTGCCGCGTCGTCACCGGACGGTGGTGGACAGGGGGCG
GTCGAAGACCACCGCGGCTCGGATGAACGCGAAACCGGCGGTGATGCCGG
TCGCGGAACGGAACGGACCACCGCGCACACCGGGGGTGACGCACTAGGTG
AAGCCG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7262:4301..4856+

>mRNA_Ecto-sp13_S_contig7262.18405.1 ID=mRNA_Ecto-sp13_S_contig7262.18405.1|Name=mRNA_Ecto-sp13_S_contig7262.18405.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7262:4301..4856+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCAGGAGGAAGTCCGGGCTTAGGCCCGGTCGCGGGTGGGAGATCGGGGC
CGCCGGGGGCGGCGGCTTCCGGCTGGAGGAGTCCGGGGGCTACGACCTGT
GTCTTCCCGTGGGGGTCGTGGAGGCGACCCCGGGACGTCGCAGGGTGAGG
CTCTCGGCGGACGTGCGGGGCTACCTGTGCCCGCGCGACGAGGGGCGGCT
GCTGAGGAGCGGCCTGGTGACGTCGTCTATCAAGATCGGGGCGGAGAGGC
ACTCGGTGGAGGCGATCGTGCTGGTTCTGGACCGGAAGTACCGGGGGCCG
GCCGTGGCCGTCGAAGCGGGGCCCGGGGATGCAGTGCGGATGGCAGCGAC
TTCGGCGTCCTTGGCGCGGCAAGGTGCTGCTGCTGCGGCTTCTTCTTCTG
CCGCGTCGTCACCGGACGGTGGTGGACAGGGGGCGGTCGAAGACCACCGC
GGCTCGGATGAACGCGAAACCGGCGGTGATGCCGGTCGCGGAACGGAACG
GACCACCGCGCACACCGGGGGTGACGCACTAGGTGAAGCC
back to top