mRNA_Ecto-sp13_S_contig7262.18404.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7262.18404.1
Unique NamemRNA_Ecto-sp13_S_contig7262.18404.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7262.18404.1 vs. uniprot
Match: D7FXV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV0_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 4.430e-29
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 2 
Query:   68 QGQVTASHKGGGASRAAVTAVCCLTPDVVLIGTDSGQLVTYSLNLPVVKNFRSSKSADQKR 250
            QGQVTASH+GGGASRAAVTAVCCLTPDVVL+GTDSGQL TYSLNLPVVKNFRSSKSADQKR
Sbjct:  415 QGQVTASHRGGGASRAAVTAVCCLTPDVVLVGTDSGQLATYSLNLPVVKNFRSSKSADQKR 475
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BLAST of mRNA_Ecto-sp13_S_contig7262.18404.1 vs. uniprot
Match: A0A6H5JZC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZC0_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.540e-23
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 2 
Query:   89 HKGGGASRAAVTAVCCLTPDVVLIGTDSGQLVTYSLNLPVVKNFRSSKSADQKR 250
             +GGGASRAAVTAVCCL+PDVVL+GTDSGQLVTYSLNLPVVKNFRSSKSADQKR
Sbjct:  647 QRGGGASRAAVTAVCCLSPDVVLVGTDSGQLVTYSLNLPVVKNFRSSKSADQKR 700
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7262.18404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXV0_ECTSI4.430e-2995.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZC0_9PHAE1.540e-2392.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7262contigEcto-sp13_S_contig7262:2689..3787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size254
Hectar predicted targeting categoryother localisation
Exons2
Cds size252
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.3075886-CDS-Ecto-sp13_S_contig7262:2688..27581681463994.3075886-CDS-Ecto-sp13_S_contig7262:2688..2758Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7262 2689..2758 +
1681463994.3204577-CDS-Ecto-sp13_S_contig7262:3604..37861681463994.3204577-CDS-Ecto-sp13_S_contig7262:3604..3786Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7262 3605..3786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7262.18404.1prot_Ecto-sp13_S_contig7262.18404.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7262 2689..3786 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7262.18404.1

>prot_Ecto-sp13_S_contig7262.18404.1 ID=prot_Ecto-sp13_S_contig7262.18404.1|Name=mRNA_Ecto-sp13_S_contig7262.18404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
EGGRVASVAVFAGEGEAARAVPAGPGDSVPQGWRRVPRGRYRRLLPHPRR
RSHRHGLRPARHLLPQPPRGEELQVIQERRPEAG
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mRNA from alignment at Ecto-sp13_S_contig7262:2689..3787+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7262.18404.1 ID=mRNA_Ecto-sp13_S_contig7262.18404.1|Name=mRNA_Ecto-sp13_S_contig7262.18404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1099bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7262:2689..3787+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGGGGGCGTGTTGCGAGTGTGGCGGTTTTTGCCGGGGAAGGCGAAGC
AGCTCGTGCCGTACCTGCAGGTGGGAGAGGGATACAGGGGGGGGGGGAGG
GAGGCAGGGAGAGACAGAGGGAGAGACAGAGACAGAGAGAGAGTGCGTTT
CTTCTGTTGCTACCGTTGTATCGTTAATCCGGAAGAGTGAATGTGCCCCT
CTCATGACCCTCCCTCACGGGGTCCCGGATTATGGACTCAAGTACTCTTT
TAACCGCAGTGAGACTGGCGTCCTTTCATTGGTCAGCCGGTTGGCGCGGT
CGATGCTAACGTGTAAACACATTGACACGCACAGATAAACGGACAGAGAG
ATAAGGGGAACACGCAGGGGGGGGGTGGGGAACGACTTATATGGGCGGGG
TTAGGCGTGAAACAGCAGTGTTTGGCCGTAGATCCGCGCAAGGGTGCTGG
AAAGGACAGGCCAACGGTAGAAAAAAGGTAGGCAGCGATGGCGGTGGCGC
TGCGCGTGCTCCTGGTCCTTGTGTTGATCGAAGCAGCGGCGTAATTAGCA
CGCCGCATATCTAAACTTCAGTTCTCACGTGGCGCAAAAGGGGATGGCCT
TATTTGTTGTCTCGACGATATTCGTCAGGCGAAAACACACAACCTCTGTA
CGGTATGTGAACGCCCGTGAGGGATACGGTTCCGCACTCTCCCCCCTTTG
AAACGAAGCACTAGTATTTGGACATGTATTTCCACCGGCTGTGTTTTTTT
TATGTTCTCTTTCTGCCGGAGCCCGCGTCCGCGTCAAGCACCCGAGTACC
TCTACGTTGCGCTCCCTTTTCCCAGCACACAACCCTCCCCTCTCCCTCGT
GACCGCCAGCGCAACGCCAAAGAACTTCGCACCCCCGTCCCCCCCCGCCG
AACCCCCCCCCTCCAGGGCCAGGTGACAGCGTCCCACAAGGGTGGAGGCG
CGTCCCGCGCGGCCGTTACCGCCGTCTGCTGCCTCACCCCAGACGTCGTT
CTCATCGGCACGGACTCAGGCCAGCTCGTCACCTACTCCCTCAACCTCCC
CGTGGTGAAGAACTTCAGGTCATCCAAGAGCGCCGACCAGAAGCGGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7262:2689..3787+

>mRNA_Ecto-sp13_S_contig7262.18404.1 ID=mRNA_Ecto-sp13_S_contig7262.18404.1|Name=mRNA_Ecto-sp13_S_contig7262.18404.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7262:2689..3787+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGGGGGCGTGTTGCGAGTGTGGCGGTTTTTGCCGGGGAAGGCGAAGC
AGCTCGTGCCGTACCTGCAGGGCCAGGTGACAGCGTCCCACAAGGGTGGA
GGCGCGTCCCGCGCGGCCGTTACCGCCGTCTGCTGCCTCACCCCAGACGT
CGTTCTCATCGGCACGGACTCAGGCCAGCTCGTCACCTACTCCCTCAACC
TCCCCGTGGTGAAGAACTTCAGGTCATCCAAGAGCGCCGACCAGAAGCGG
GC
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