mRNA_Ecto-sp13_S_contig7261.18402.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7261.18402.1
Unique NamemRNA_Ecto-sp13_S_contig7261.18402.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7261.18402.1 vs. uniprot
Match: D8LBW9_ECTSI (Novel cap binding protein nCBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBW9_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 5.770e-31
Identity = 67/69 (97.10%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:    1 RADREKDLEKWGKVRKDPTSHRDXXXXXXXGDPAFRDRAEFRDRDTTDRDWGRLRRPGPPPGVGGGLRG 207
            R DREKDLEKWGKVRKDPTSHRDXXXXXXXGDP FRDRAEFRDRDTTDRDWGRLRRPGPPPGVGGGLRG
Sbjct:  414 RVDREKDLEKWGKVRKDPTSHRDXXXXXXXGDPTFRDRAEFRDRDTTDRDWGRLRRPGPPPGVGGGLRG 482
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7261.18402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBW9_ECTSI5.770e-3197.10Novel cap binding protein nCBP n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7261contigEcto-sp13_S_contig7261:6606..7527 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score125.9
Seed ortholog evalue7.1e-27
Seed eggNOG ortholog2880.D8LBW9
Preferred nameEIF4E2
Model size208
KEGG koko:K03259
KEGG Pathwayko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04910,map01521,map03013,map04066,map04150,map04151,map04211,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
GOsGO:0000339,GO:0000340,GO:0001701,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005845,GO:0006412,GO:0006417,GO:0006518,GO:0006807,GO:0007275,GO:0007553,GO:0007554,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010565,GO:0010566,GO:0010605,GO:0010608,GO:0010629,GO:0010817,GO:0010893,GO:0017148,GO:0019216,GO:0019218,GO:0019222,GO:0019538,GO:0019899,GO:0030371,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031625,GO:0032268,GO:0032269,GO:0032350,GO:0032352,GO:0032501,GO:0032502,GO:0032991,GO:0034248,GO:0034249,GO:0034518,GO:0034641,GO:0034645,GO:0043009,GO:0043043,GO:0043170,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044389,GO:0044424,GO:0044444,GO:0044464,GO:0045182,GO:0045834,GO:0045940,GO:0045966,GO:0045998,GO:0046885,GO:0046886,GO:0046889,GO:0046890,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050810,GO:0051094,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0060255,GO:0062012,GO:0062013,GO:0065007,GO:0065008,GO:0071704,GO:0080090,GO:0090030,GO:0090031,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2000026,GO:2000112,GO:2000113
Exons2
EggNOG free text desc.translation initiation factor activity
EggNOG OGsCOG5053@1,KOG1669@2759
Ec32 ortholog descriptionnovel cap binding protein nCBP
Ec32 orthologEc-20_003570.2
Cds size207
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03012,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.1986392-CDS-Ecto-sp13_S_contig7261:6605..67731681463994.1986392-CDS-Ecto-sp13_S_contig7261:6605..6773Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7261 6606..6773 -
1681463994.2125304-CDS-Ecto-sp13_S_contig7261:7488..75271681463994.2125304-CDS-Ecto-sp13_S_contig7261:7488..7527Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7261 7489..7527 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7261.18402.1prot_Ecto-sp13_S_contig7261.18402.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7261 6606..7527 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7261.18402.1

>prot_Ecto-sp13_S_contig7261.18402.1 ID=prot_Ecto-sp13_S_contig7261.18402.1|Name=mRNA_Ecto-sp13_S_contig7261.18402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
RADREKDLEKWGKVRKDPTSHRDRDRDRERGDPAFRDRAEFRDRDTTDRD
WGRLRRPGPPPGVGGGLRG
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mRNA from alignment at Ecto-sp13_S_contig7261:6606..7527-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7261.18402.1 ID=mRNA_Ecto-sp13_S_contig7261.18402.1|Name=mRNA_Ecto-sp13_S_contig7261.18402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=922bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7261:6606..7527- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGCGGATCGCGAGAAGGACTTGGAGAAGTGGGGGAAGGTGTGTGCGTG
GGTTTTTGTTGTGTTGAGGTTTGAACGTTTCAGTTTTAACAAGGCGCAAT
AGTAGGGGAAGGAGGGAGCGATTCTGCTTCAAAAACAACGGATTTTGGAT
GCGCGTATTGTGCTTCTGTATACATTCGCCACCTCGCTGCCGCTGTTTCT
TGTTTTTTGGAGGCATCGTTACTCGAGCATACGTACGAGAAAGGCGGTGA
TTGTTGCCGCTTTGGCTTTTGTCTTCGTGTCCGTGAAAACAGGGTTATTC
ATGAAACTCAGGGGAGGTAATGGGACATGGGGATTGTAACGGCACTTAGC
GGTGTTCATGGATTTCAGGGTGTTCCCTTTTGTCTTCTTGGTACAGCGCT
GTGCCCTGAATAGTGCCAGTATGTGCCCAGAGATTTTACCGGCACTATAC
GGGACACCGACACTATTCAAAGTACACAAACATCTTGGCATTTGAGTGTG
TGCGAGCCGAAACCAGAGGCACTATACCGGGCATCCGGCACTGTACAAGT
CCCAGTACTGTTCGGGGCGCTCTGAGGGTTGGTGGCCTCTCCCTTTATGT
GTAGCTTCTTCCCACGCCCACGCCGCTCTCCAGTGCCCCGGCTCTCGTGA
GTCAAACAACACGTCCCCATACGTACATTACAACGTAATCTGACCACCGT
CACTGACAACCGAAACATGACACACGGTACCGCCCATGGAACAACCAACA
ACAGGTGCGGAAAGACCCGACCAGCCACCGGGACAGAGACCGGGACAGGG
AGCGAGGCGACCCGGCGTTCCGTGATCGCGCGGAATTCCGAGACAGAGAC
ACCACCGACCGCGACTGGGGAAGGCTCCGCCGCCCGGGCCCGCCTCCGGG
CGTTGGAGGTGGTCTCAGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7261:6606..7527-

>mRNA_Ecto-sp13_S_contig7261.18402.1 ID=mRNA_Ecto-sp13_S_contig7261.18402.1|Name=mRNA_Ecto-sp13_S_contig7261.18402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7261:6606..7527- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGCGGATCGCGAGAAGGACTTGGAGAAGTGGGGGAAGGTGCGGAAAGA
CCCGACCAGCCACCGGGACAGAGACCGGGACAGGGAGCGAGGCGACCCGG
CGTTCCGTGATCGCGCGGAATTCCGAGACAGAGACACCACCGACCGCGAC
TGGGGAAGGCTCCGCCGCCCGGGCCCGCCTCCGGGCGTTGGAGGTGGTCT
CAGGGGG
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