mRNA_Ecto-sp13_S_contig7261.18401.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7261.18401.1
Unique NamemRNA_Ecto-sp13_S_contig7261.18401.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7261.18401.1 vs. uniprot
Match: D8LBW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBW8_ECTSI)

HSP 1 Score: 519 bits (1337), Expect = 7.260e-182
Identity = 259/292 (88.70%), Postives = 270/292 (92.47%), Query Frame = 1 
Query:   37 VAGLLLRFLCGHLTPLSYAHPMFALRSAHLQRGMHACGVGRPLCSKASGVETEGLVSLLVFHRHGDRSPLRGHTPDEELALPTAAASAAPAKAHGGSAVGTGDGGGSERAGQVAAPARSAENFWRGQLVPPEVVRRLDELYPVKRSPGEAVPPDEARLLIAPFGCLTSLGLQQLRDRGEKFRQLYSCDDIDNAKLEVFSTNYRRTQLSAQGFLDGLLRAGGRGGVPVVVRPKADDFLNQWESRGHEMHERMMVVESEPDFRATEETVGGPLKRRLHALDPALFPLPQGGRFR 912
            VAGLL RFLCGHLTPLSY HPMFA +S  L RG+HA GVGRPLCSKASG ET+GL+SLLVFHRHGDRSPLRGHTPDEELALPTAAA AAP    GGSAVGTGDGGGSE+ G+VAAP RSAENFWRGQLVPPEVVRRLDELYPVKRSPGEAVPPD+     APFGCLTSLGLQQL+DRGE+FRQ YSCDDIDNAKLEVFSTNYRRTQLSAQGFLDGLLRAGGRGGVPVVVRP+ADDFLNQWESRGHEM+ERMMVVESEPDFR TEETVGGPLKRRLHALDPALFPLPQGGRFR
Sbjct:    2 VAGLLPRFLCGHLTPLSYVHPMFAPQSTRLLRGLHARGVGRPLCSKASGSETQGLLSLLVFHRHGDRSPLRGHTPDEELALPTAAAPAAPGNTRGGSAVGTGDGGGSEKPGRVAAPVRSAENFWRGQLVPPEVVRRLDELYPVKRSPGEAVPPDKES---APFGCLTSLGLQQLQDRGEQFRQRYSCDDIDNAKLEVFSTNYRRTQLSAQGFLDGLLRAGGRGGVPVVVRPRADDFLNQWESRGHEMYERMMVVESEPDFRVTEETVGGPLKRRLHALDPALFPLPQGGRFR 290
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BLAST of mRNA_Ecto-sp13_S_contig7261.18401.1 vs. uniprot
Match: A0A6H5KWJ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWJ7_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 2.920e-58
Identity = 93/100 (93.00%), Postives = 98/100 (98.00%), Query Frame = 1 
Query:  613 AKLEVFSTNYRRTQLSAQGFLDGLLRAGGRGGVPVVVRPKADDFLNQWESRGHEMHERMMVVESEPDFRATEETVGGPLKRRLHALDPALFPLPQGGRFR 912
            ++LEVFSTNYRRTQLSAQGFLDGLLRAGGRGGVPVVVRP+ADDFLNQWESRGHEM+ERMMVVESEPDFR TEET+GGPLKR LHALDPALFPLPQGGRFR
Sbjct:   30 SRLEVFSTNYRRTQLSAQGFLDGLLRAGGRGGVPVVVRPRADDFLNQWESRGHEMYERMMVVESEPDFRVTEETIGGPLKRSLHALDPALFPLPQGGRFR 129
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BLAST of mRNA_Ecto-sp13_S_contig7261.18401.1 vs. uniprot
Match: A0A6H5JZD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZD7_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.830e-20
Identity = 44/53 (83.02%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:   40 AGLLLRFLCGHLTPLSYAHPMFALRSAHLQRGMHACGVGRPLCSKASGVETEG 198
            AGLL RFLC +LTPLSYAHPMFA RS  L R +HACGVGRPLCSKASGVETEG
Sbjct:    3 AGLLPRFLCRNLTPLSYAHPMFAPRSTRLLRVLHACGVGRPLCSKASGVETEG 55
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BLAST of mRNA_Ecto-sp13_S_contig7261.18401.1 vs. uniprot
Match: W7T876_9STRA (Histidine acid n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T876_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.760e-9
Identity = 55/227 (24.23%), Postives = 98/227 (43.17%), Query Frame = 1 
Query:  199 LVSLLVFHRHGDRSPLRGHTPDEELALPTAAASAAPAKAHGGSAVGTGDGGGSERAGQVAAPARSAENFWRGQLVPPEVVRRLDELYPVKRSPGEAVPPDEARLLIAPFGCLTSLGLQQLRDRGEKFRQLY--------------SCDDIDNAKLEVFSTNYRRTQLSAQGFLDGL--LRAGGRGGVPVVVRPKADDFLNQWESRGHEMHERMMVVESEPDFRATEE 831
            +  +++ HRHG+R+P+     +                                  G  AA A+  +  W  +L   E +  L+  +P++ S    +P D   ++  PFGCLT  GL+ +R+ G   R L+              +    ++ K++VFS+N+ RTQ SAQG L GL   +    G VPV VR + D  ++ ++++   + + +  V +   F   +E
Sbjct:   43 VCGMVILHRHGERAPVVNFYDN----------------------------------GSDAAVAQEEQKRWLRRLPNEEDMAFLNLHFPIQ-SAATRIPHD---VITRPFGCLTGKGLESMRNLGRSIRNLHPELLGGGEIKKHSDTPKRSESVKIKVFSSNFSRTQQSAQGLLHGLGAQQVAHSGQVPVFVREENDCTIHMYDNKPAGIQDEVNKVLTSSSFLCRQE 231
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BLAST of mRNA_Ecto-sp13_S_contig7261.18401.1 vs. uniprot
Match: A0A024FXP2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FXP2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 3.490e-6
Identity = 65/237 (27.43%), Postives = 98/237 (41.35%), Query Frame = 1 
Query:  199 LVSLLVFHRHGDRSPLRGHTPDEELALPTAAASAAPAKAHGGSAVGTGDGGGSERAGQVAAPARSAENFWRGQLVPPEVVRRLDELYPVKRSPGEAVPPDEARLLIAPFGCLTSLGLQQLRDRGEKFRQLYSCDDI--------DNAKLEVFSTNYRRTQLSAQGFLDGLLRAGGR-GGVPVVVRPKADDFLNQWE--SRGHEMHERMMVVESEPDFRATEETVGGPLKRRLHALDP 876
            L  + + HRHGDR+PL                                       AG      R A+  W  +L    V+  L   Y +     ++VP    RL  + FG LTS+G++Q+ +RG + RQ     D+        D   + VF+ ++ RTQLS +  L GLL A  +   + + + P   DFLN++   S+   M  RM   +SE  FR  E     P+K +L  + P
Sbjct:    5 LRQVQIVHRHGDRTPLWNVF-----------------------------------AGHKMEEQREAKR-WLTKLPSDAVLSDLCGKYVLASQTPQSVP---NRLPSSEFGRLTSIGMEQMIERGVQLRQNLDPQDVEGTFFSQLDPENVMVFANSHERTQLSVKALLLGLLHAEKKLFPLQINLLPIDQDFLNRYSFYSQLVAMKARMETTDSELRFREAEMK---PIKEQLCGVLP 199
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7261.18401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LBW8_ECTSI7.260e-18288.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWJ7_9PHAE2.920e-5893.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZD7_9PHAE4.830e-2083.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7T876_9STRA4.760e-924.23Histidine acid n=1 Tax=Nannochloropsis gaditana Ta... [more]
A0A024FXP2_9STRA3.490e-627.43Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7261contigEcto-sp13_S_contig7261:112..3167 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score521.5
Seed ortholog evalue2.6e-145
Seed eggNOG ortholog2880.D8LBW8
Preferred nameMBAP2
Model size916
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.acid phosphatase activity
EggNOG OGsKOG3720@1,KOG3720@2759
Ec32 ortholog descriptionHistidine phosphatase superfamily
Ec32 orthologEc-20_003560.1
Cds size915
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7261.18401.1prot_Ecto-sp13_S_contig7261.18401.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7261 112..3167 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463994.0682714-CDS-Ecto-sp13_S_contig7261:111..2431681463994.0682714-CDS-Ecto-sp13_S_contig7261:111..243Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7261 112..243 -
1681463994.0887046-CDS-Ecto-sp13_S_contig7261:672..8381681463994.0887046-CDS-Ecto-sp13_S_contig7261:672..838Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7261 673..838 -
1681463994.1019185-CDS-Ecto-sp13_S_contig7261:1077..11791681463994.1019185-CDS-Ecto-sp13_S_contig7261:1077..1179Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7261 1078..1179 -
1681463994.1199949-CDS-Ecto-sp13_S_contig7261:1504..16851681463994.1199949-CDS-Ecto-sp13_S_contig7261:1504..1685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7261 1505..1685 -
1681463994.1376925-CDS-Ecto-sp13_S_contig7261:1969..21061681463994.1376925-CDS-Ecto-sp13_S_contig7261:1969..2106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7261 1970..2106 -
1681463994.160852-CDS-Ecto-sp13_S_contig7261:2970..31671681463994.160852-CDS-Ecto-sp13_S_contig7261:2970..3167Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7261 2971..3167 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7261.18401.1

>prot_Ecto-sp13_S_contig7261.18401.1 ID=prot_Ecto-sp13_S_contig7261.18401.1|Name=mRNA_Ecto-sp13_S_contig7261.18401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=305bp
VAHAVESCCPRTVAGLLLRFLCGHLTPLSYAHPMFALRSAHLQRGMHACG
VGRPLCSKASGVETEGLVSLLVFHRHGDRSPLRGHTPDEELALPTAAASA
APAKAHGGSAVGTGDGGGSERAGQVAAPARSAENFWRGQLVPPEVVRRLD
ELYPVKRSPGEAVPPDEARLLIAPFGCLTSLGLQQLRDRGEKFRQLYSCD
DIDNAKLEVFSTNYRRTQLSAQGFLDGLLRAGGRGGVPVVVRPKADDFLN
QWESRGHEMHERMMVVESEPDFRATEETVGGPLKRRLHALDPALFPLPQG
GRFR*
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mRNA from alignment at Ecto-sp13_S_contig7261:112..3167-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7261.18401.1 ID=mRNA_Ecto-sp13_S_contig7261.18401.1|Name=mRNA_Ecto-sp13_S_contig7261.18401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7261:112..3167- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGCTCACGCGGTCGAGTCCTGCTGCCCGAGAACGGTGGCAGGGCTGCT
TCTGCGTTTTCTGTGCGGGCACCTGACACCGCTGAGTTACGCTCATCCCA
TGTTTGCACTACGGAGCGCGCACCTACAGCGCGGTATGCATGCATGTGGT
GTCGGGCGCCCGCTGTGCTCCAAGGCATCCGGTGTCGAGACGGAAGGGTG
AGTTCCGCCGCGAAGTTGATGATAGACGCTGTCCGCGCGACTGCTACTGC
TGGAATGCTTTTGTTGTTTTCAATTGTGACACAGTGCAGGTCTGGATTCG
TTCGTTTTCTACGCATGTAGTCCCACCCAATTTAATGGGTTCGCTATCGT
GGTGTTGCCGCTATGCGGTCTGCTGTGACAGAACCTTGCGCCTACAGGCA
GGTCAACGCTGTGGGACATAAAACATGAGCAACCGCCTTTGTACCGAGTA
CTCTTTCTGGTTGAAGACCGACACTTTCTTAGGCCGTGACCAAGAATGAA
GTTTTCCGCGGATGTGCTTTAGCCGGAGCGCCATATCGCGCAGCCGCTCT
CGAAGAAAATCGTAGCATCTATCAATGTTGGTGCATCCACTTGCAGTACC
GTTGACATCACTGGCGTGATCTACATGGTGAAGGTACAATACGGCCAAAG
GGTGAACGCTTGCATGTGTGGTGGTGCGTGCGCGTTACATGTACCTGCAC
GCTTTGGTTAGGAAAGGAGACCGAGGTTTCCATAAAGTTTTACTACGAGT
AATGCACCTCCGGCCTCCCAAGCACAAACTCCGTGCGGACACCAGCACGG
CCACACCCAATGCGACGGTAGCCCATCTTCGAAACCGGAGTTGTAGTGGT
ATCTCCTACCGTAATGATGCAAGAGTTATGTGTTGTTAGCTCGACAGGTC
TTGATACAATATGCGTAAGACAGCTTGACTGTGATCCAGCTTGTTTCTCT
GGAAGCAAGAGATGCGTCCAGAGTACATTACTACTAGCAGCCAAGGATCT
CTCACGTACCTACCCCCCCCTGCCCACGCCCGCGCGCCCCTTCCCTGGTC
ACCCCCTCCAGCCTTGTATCCTTGCTTGTTTTCCATCGGCATGGGGACAG
GTCGCCTCTGCGTGGACACACGCCAGACGAGGAGCTAGCTTTGCCGACAG
CAGCAGCATCAGCAGCACCAGCAAAAGCTCACGGCGGCAGCGCCGTCGGT
AAGGAAGGGCGGAGAGCAACAAAGGGCTGTTGTTGCAGCACTCCCATTGG
GTGAAGCCCCGCGTCGAACACGGCAAAGCCTCTCCCTTTAATCAAAATCC
CTTGGCCGAGGCATCACACACATGTTGACGCTTGCGAGTTTAAATCCTGT
TTAGTTACGAGTTGACTAAACAGTAGGAAACTCGAGCCAGTATCAGGACC
TTTGTTTGGCTGCAGAAACGCAGCGCGTCGATATCATGCCTGTCGATGGA
AACAATACCGTTTCCTTCTTTCTATGGGACAGGTACAGGAGACGGCGGGG
GTTCGGAGAGAGCCGGGCAGGTCGCAGCGCCGGCGAGATCGGCAGAGAAT
TTTTGGAGGGGGCAGCTGGTGCCGCCGGAGGTGGTCCGGAGACTCGACGA
GCTGTACCCGGTCAAGCGTTCGCCCGGGGAGGCAGTTCCGCCTGATGAGG
CGCGTTTATTGATGTTTTTGTTGTTGTTGTTGTTGCTGTTGTTGTTGCTT
TTGTTGTTGCTGTTGCTGTTCATGTTCTGTGAAACGTTTGACCTTCGGGA
AGCGTTGTTGGGTCGTTGTTGCCGGAGTTTCTTCTCCTGCTGCCGTTGCC
GCTGTTGTGGTTGTTCCTGCTGCCGCTGCTGCTGCTTTTGCTGTTGCGGG
CGTTGTTGTTCTTCTTGTCTTTGTTCTTCAGGTATGGGATAGTTTACGTG
TTGATCGACGGTCATCGCTCATCTTTTGCTGTTCACGGCTACTACTGTGG
CATGCTTGGTGTGTGCTTCGGTGGAGAAAGCAGGAGAGCGCACCGTTCGG
CTGCCTGACGTCTCTGGGGCTGCAGCAGCTTCGAGATAGGGGAGAGAAGT
TCAGGCAACTTTACTCCTGTGACGACATTGACAACGCAAAGTGAGAGATC
TGGTACAGCCGAAAAAGGAAAACCACCATGCCTGCTGCTGATGCTGCATT
CACCACCACAACAACTACTACCACTAAAGCACCAGTCACCACCGCACCAC
AGTTCCTTGGTATAGCAGGTGTTGAGTGAAACCATTCATGTTTAAACGTC
GCGTGGCTAACGGGGGACGTATGATTTCTATCGTACCAGAAGAAGAAATC
ATCTCCCCAGCCGTGCATAACACTTCCAGGTTGGAAGTGTTCTCGACCAA
CTACCGCCGGACGCAGCTGTCGGCGCAAGGTTTTCTGGACGGGCTTTTAA
GGGCGGGCGGGAGGGGCGGCGTACCCGTGGTGGTTAGGCCTAAAGCGGAC
GACTTTCTCAATCAGTGGGAGAGCCGAGGGCACGAAATGCACGAGGTGTG
TGAAACCGTGGTGGGGGGGGCTCGCAGGCGGGAAGGGTGGGCGCGGGAAA
GCGTGATAGAGTGTCCCATGTGTGTCACCGTGCTTGCACCGCACAGGATG
AGGTCTTGCAGACCGGGGTACCCTGCTGCGGTGTTTCGACAATTAACACT
TCGGACCCTTCGGGGTCGAGTGTCCCCTCCTGCGCAGGACGTTGTTCTTG
AACTCGACCCGGAAATTTCCCGGCACGTTCTTCGCGTCAGGCGTACACCA
AAGGACCTGCACCTCGCCGACCGGTTCGCACCCCTCGTTTTCGTATTTTT
CTCTGATGTCGTCTTGGTTTCTTTTCTCCGGCACACTGGTGATTCGGCTG
CAGAAAAACCCGCATCCCGCGTGAAAAACTCCCGTCCCGCGTGTAAATTC
CTTCCTTCAATTCAAACCTCATAGCGCATGATGGTGGTCGAGTCCGAGCC
TGACTTCCGGGCGACGGAGGAGACCGTTGGAGGACCGTTGAAGAGAAGGC
TTCACGCGCTCGACCCTGCGCTCTTCCCGCTGCCTCAAGGAGGCAGATTT
CGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7261:112..3167-

>mRNA_Ecto-sp13_S_contig7261.18401.1 ID=mRNA_Ecto-sp13_S_contig7261.18401.1|Name=mRNA_Ecto-sp13_S_contig7261.18401.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=915bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7261:112..3167- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGCTCACGCGGTCGAGTCCTGCTGCCCGAGAACGGTGGCAGGGCTGCT
TCTGCGTTTTCTGTGCGGGCACCTGACACCGCTGAGTTACGCTCATCCCA
TGTTTGCACTACGGAGCGCGCACCTACAGCGCGGTATGCATGCATGTGGT
GTCGGGCGCCCGCTGTGCTCCAAGGCATCCGGTGTCGAGACGGAAGGCCT
TGTATCCTTGCTTGTTTTCCATCGGCATGGGGACAGGTCGCCTCTGCGTG
GACACACGCCAGACGAGGAGCTAGCTTTGCCGACAGCAGCAGCATCAGCA
GCACCAGCAAAAGCTCACGGCGGCAGCGCCGTCGGTACAGGAGACGGCGG
GGGTTCGGAGAGAGCCGGGCAGGTCGCAGCGCCGGCGAGATCGGCAGAGA
ATTTTTGGAGGGGGCAGCTGGTGCCGCCGGAGGTGGTCCGGAGACTCGAC
GAGCTGTACCCGGTCAAGCGTTCGCCCGGGGAGGCAGTTCCGCCTGATGA
GGCGCGTTTATTGATCGCACCGTTCGGCTGCCTGACGTCTCTGGGGCTGC
AGCAGCTTCGAGATAGGGGAGAGAAGTTCAGGCAACTTTACTCCTGTGAC
GACATTGACAACGCAAAGTTGGAAGTGTTCTCGACCAACTACCGCCGGAC
GCAGCTGTCGGCGCAAGGTTTTCTGGACGGGCTTTTAAGGGCGGGCGGGA
GGGGCGGCGTACCCGTGGTGGTTAGGCCTAAAGCGGACGACTTTCTCAAT
CAGTGGGAGAGCCGAGGGCACGAAATGCACGAGCGCATGATGGTGGTCGA
GTCCGAGCCTGACTTCCGGGCGACGGAGGAGACCGTTGGAGGACCGTTGA
AGAGAAGGCTTCACGCGCTCGACCCTGCGCTCTTCCCGCTGCCTCAAGGA
GGCAGATTTCGGTGA
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