mRNA_Ecto-sp13_S_contig726.18396.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig726.18396.1
Unique NamemRNA_Ecto-sp13_S_contig726.18396.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig726.18396.1 vs. uniprot
Match: D8LBZ9_ECTSI (TLDc domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBZ9_ECTSI)

HSP 1 Score: 570 bits (1469), Expect = 6.560e-201
Identity = 284/322 (88.20%), Postives = 287/322 (89.13%), Query Frame = 2
Query:   74 MRTPGTTALLWSCLQGVNSFTVPPQALGKTHRSLSAPSSAAVVTRVEHEDRTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKFFTMFFGNKDDAPGGDLDRITVKKFPDQYPAEKILQAEPVQGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTTKRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQEGSERMGRSKLGSYYERLPAAYGGASIFAPGDNGGSAEMVDLKAYVGVYERGEKIPFDDAIPFSLS 1039
            MRTPGTTALLWSCLQGVNSFTVPPQALGKTHRSLSAPSSA VVTRVEHEDRTC                                EKFF+MFFGNKDDAPGGDLDRITVKKFPDQYPAEKILQAEPV+GDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDT KRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQ+GSERMGRSKLGSYYERLPAAYGGASIFAPGDNGG AEMVDLKAYVGVYERGEKIPFDDAIPFSLS
Sbjct:    1 MRTPGTTALLWSCLQGVNSFTVPPQALGKTHRSLSAPSSATVVTRVEHEDRTCRTSSSRGSRSTCVRAKGGTGEEEAGEEQQDVIEKFFSMFFGNKDDAPGGDLDRITVKKFPDQYPAEKILQAEPVKGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTNKRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQKGSERMGRSKLGSYYERLPAAYGGASIFAPGDNGGIAEMVDLKAYVGVYERGEKIPFDDAIPFSLS 322          
BLAST of mRNA_Ecto-sp13_S_contig726.18396.1 vs. uniprot
Match: A0A6V1NAM7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NAM7_HETAK)

HSP 1 Score: 314 bits (804), Expect = 1.760e-100
Identity = 158/239 (66.11%), Postives = 188/239 (78.66%), Query Frame = 2
Query:  329 EKFFTMFFGNKDDAPGGDLDRITVKKFPDQYPAEKILQAEPVQGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTTK--RAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQEGSERMGRSKLGSYYERLPAAYGGASIFAPGDNGGSAEMVDLKAYVGVYERGEKIPFDDAIPFSLS 1039
            EK F+ FFG K++ P G L R   + FPDQ+PA K   A+PV GDSKDMAV RPLLKQTELE RKLKLVYDA +NGW P AFHKGVD  GPG++V KTKGGAV+GGYNPKGWVGYGEYRPGLSAFLFTW DG+T    +A+KLRKIGGAGLAV DKPE GP+FG+DG  + M    +R+ +  LGSYYER+P   G  S+FA G++  + E+VDLKAYVG+Y +GE+IPF+DAIPFSL+
Sbjct:   71 EKLFSFFFGQKEEEPLG-LKRFNKETFPDQFPATKTEFADPVPGDSKDMAVFRPLLKQTELESRKLKLVYDANKNGWNPTAFHKGVDKLGPGVIVAKTKGGAVIGGYNPKGWVGYGEYRPGLSAFLFTWPDGNTVDYTKALKLRKIGGAGLAVIDKPEEGPVFGADGLCIRMAPKKQRIAQCSLGSYYERMPG--GKKSLFAQGESLANTELVDLKAYVGIYAKGEEIPFNDAIPFSLT 306          
BLAST of mRNA_Ecto-sp13_S_contig726.18396.1 vs. uniprot
Match: A0A835YK91_9STRA (TLDc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK91_9STRA)

HSP 1 Score: 290 bits (743), Expect = 4.050e-92
Identity = 150/245 (61.22%), Postives = 185/245 (75.51%), Query Frame = 2
Query:  329 EKFFTMFFGNK---DDAPGGDLDRITVKKFPDQYPAEKILQAEPVQGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTTKRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQEGS-----ERMGRSKLGSYYERLPAAYGGASIFAPGDNGGSAEMVDLKAYVGVYERGEKIPFDDAIPFSLS 1039
            E+FF   FG K   D+AP G + R+T++ FPDQYPA K   A+PV GD+KDMA+ RP L QT LE RKLK VYDA R+GW+PAAFH+GVD KGPG+V+ +T GGAVVGGYNPKGWVG  EYRPGLSAFLFTW DGDT+KR +KLRK+GGAGLA +D+   GP FGS+G  V +  GS     ER+ R KLG+YYER+P   GG S+FAPG+ G +A++ +LKA+VGVY + E+IPFDD I  S +
Sbjct:   11 ERFFGFVFGQKALDDEAPMG-MKRMTIENFPDQYPATKDRWADPVAGDTKDMALFRPALAQTMLEKRKLKCVYDAARDGWRPAAFHRGVDKKGPGVVLARTAGGAVVGGYNPKGWVGESEYRPGLSAFLFTWPDGDTSKRPVKLRKVGGAGLACYDRASTGPFFGSEGLCVPLDAGSGGGGAERVARCKLGAYYERMPD--GGNSMFAPGEKG-AAQLTELKAFVGVYAKDEEIPFDDVIYLSFT 251          
BLAST of mRNA_Ecto-sp13_S_contig726.18396.1 vs. uniprot
Match: A0A7S4EVG5_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EVG5_CHRCT)

HSP 1 Score: 249 bits (635), Expect = 2.470e-74
Identity = 126/236 (53.39%), Postives = 163/236 (69.07%), Query Frame = 2
Query:  329 EKFFTMFFGNKDDAPGGDLDRITVKKFPDQYPAEKILQAEPVQGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTTKRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQEGSERMGRSKLGSYYERLPAAYGGASIFAPGDNGGSAEMVDLKAYVGVYERGEKIPFDDAIPFSL 1036
            EK F +FFG   +     L R      PD YPA K   A+PV+GD ++  ++RPLLK T LE+  L+L YDA R+GW+ A FH+ VD  GP +VV +T+GGAV GGY PKG+ GYGEYR  ++AFL+TW DGDT +  +KL+K+GGAGLA  D+PE GP FG++G  + M  GSER+ RSKLG YYER+P   GG SIFA  DN    E+ +L+ YVGV+  GE+IPFD AIPF++
Sbjct:  139 EKLFGVFFGAPQEGEVAGLARTA--SAPDTYPATKTEFADPVEGDIEEATILRPLLKNTNLEYLPLRLAYDANRDGWRAADFHEKVDKTGPCIVVCETEGGAVCGGYAPKGFAGYGEYRGSIAAFLYTWPDGDTDRAPIKLQKMGGAGLATIDEPETGPRFGAEGLSIPMDPGSERIARSKLGPYYERMPD--GGGSIFAANDNSKRCELKELRVYVGVWPEGERIPFDGAIPFAI 370          
BLAST of mRNA_Ecto-sp13_S_contig726.18396.1 vs. uniprot
Match: A0A7S0DY99_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0DY99_9CRYP)

HSP 1 Score: 240 bits (612), Expect = 2.790e-69
Identity = 129/244 (52.87%), Postives = 159/244 (65.16%), Query Frame = 2
Query:  329 EKFFTMFFGNKDDAPGG-DLDRITVKKFPDQYPAEKILQAEPVQGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTTKRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQE-------GSERMGRSKLGSYYERLPAAYGGASIFAPGDNGGSAEMVDLKAYVGVYERGEKIPFDDAIPFSL 1036
            EKFF   FG    +P    L R    KFP+ YPA     A PV  D       RPLL +T LE R+LKLV+DA R+GW P AFH  VD  GPG+V+ +T+ GAVVGGYNPKGWVGYGEYR  ++AFLF+W DGDT+K A+KLRK+GGAGLA  D PE GP FG+DG  + ++        G ER+ R KLG YYE+ P   G  +IF   +   +A + DLK YVGVYE GE+IP++DA+PF L
Sbjct:  272 EKFFASLFGKIGASPEQVGLKRFDQSKFPELYPATLTEFAAPVASDDATAQQFRPLLAKTSLEKRELKLVFDANRDGWTPGAFHGAVDKLGPGVVLARTEQGAVVGGYNPKGWVGYGEYRGSIAAFLFSWPDGDTSKPAIKLRKVGGAGLACIDDPESGPRFGADGLHIPLEAPRSEAEAGRERLARCKLGPYYEKRPD--GSNTIFTKAEKA-TATLTDLKVYVGVYEEGEEIPYNDALPFQL 512          
BLAST of mRNA_Ecto-sp13_S_contig726.18396.1 vs. uniprot
Match: A0A0M0JKV5_9EUKA (TLDc domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JKV5_9EUKA)

HSP 1 Score: 228 bits (582), Expect = 2.120e-68
Identity = 122/231 (52.81%), Postives = 154/231 (66.67%), Query Frame = 2
Query:  344 MFFGNKDDAPGGDLDRITVKKFPDQYPAEKILQAEPVQGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTTKRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQEGSERMGRSKLGSYYERLPAAYGGASIFAPGDNGGSAEMVDLKAYVGVYERGEKIPFDDAIPFSL 1036
            MFFG+        L R      PD YPA K   A PV+GD  +MA+IRPLLK T LE   L+LVYDA ++GW  A+FH GVD +GP +V+ KTKGG V GGY PKG+ G+GEYR  ++AFLFTW DGD  + A+KL+K GG  LA  D+PE GP FG+DG  V M+ G ER+  SKLG YYE +P   G  S+F PGD G + E+  ++AY G +  GE+IPF+ AIPF+L
Sbjct:    1 MFFGDPQQGDVAGLRRTAGA--PDTYPATKTEFALPVEGDDTEMALIRPLLKNTNLELLPLRLVYDANKDGWNAASFHGGVDAQGPCVVLCKTKGGCVCGGYAPKGFAGFGEYRGSIAAFLFTWPDGDVRQPAVKLQKQGGGSLATIDEPETGPRFGADGLTVFMRPGRERLATSKLGPYYEVMPD--GRRSVFGPGD-GMTCELTSVRAYAGCWPEGERIPFNGAIPFAL 226          
BLAST of mRNA_Ecto-sp13_S_contig726.18396.1 vs. uniprot
Match: A0A7S1TFM7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFM7_9RHOD)

HSP 1 Score: 230 bits (587), Expect = 3.950e-68
Identity = 126/246 (51.22%), Postives = 164/246 (66.67%), Query Frame = 2
Query:  329 EKFFTMFFGNKDDAPGGDLDRITVKKFPDQYPAEKILQAEPVQGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTTKRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQE-------GSERMGRSKLGSYYERLPAAYGGASIFAPGDNG---GSAEMVDLKAYVGVYERGEKIPFDDAIPFSL 1036
            EK F +FFG K++ P G L R    +FP+Q+PA     AE VQGDSKD+A+ RPLL +T+L  R L+LV+D   +GW   AFH+ VD +G G+V+ +T  G V GGYNPKGWVGYGE R  +++FLFTW DG+T K AMK+RK+G A L+V D PE GP FG+D   + +Q+       GSE+  RSKLGSYYERLP    G +   P  +    G   +  +K +VGVYE GE+IPF+DA+PFSL
Sbjct:   59 EKLFGVFFGKKEENPLG-LKRFDRDRFPEQFPAPLDEFAEAVQGDSKDVALFRPLLARTQLCRRSLRLVFDTDSDGWTAEAFHRAVDRQGAGVVLLRTVDGVVCGGYNPKGWVGYGESRGSVASFLFTWPDGNTNKPAMKMRKVGQAYLSVLDNPETGPQFGADSLVIPLQDTRLRGPDGSEKQARSKLGSYYERLPD---GRNCLFPDSSHPRKGYCYVDSVKVFVGVYEEGEQIPFNDALPFSL 300          
BLAST of mRNA_Ecto-sp13_S_contig726.18396.1 vs. uniprot
Match: A0A448ZH24_9STRA (TLDc domain-containing protein n=2 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZH24_9STRA)

HSP 1 Score: 230 bits (587), Expect = 5.700e-68
Identity = 125/236 (52.97%), Postives = 156/236 (66.10%), Query Frame = 2
Query:  329 EKFFTMFFGNKDDAPGGDLDRITVKKFPDQYPAEKILQAEPVQGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTTKRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQEGSERMGRSKLGSYYERLPAAYGGASIFAPGDNGGSAEMVDLKAYVGVYERGEKIPFDDAIPFSL 1036
            +K F++FFG K+  P G + R   ++FP+QYPA     AEPV  D KDMAV+RP+LK T LE R LKL Y A R+GW P +FH+ VD  G GLVV  T+ G V GGYNPKGWVGYGE R  ++AFL+ +  G T++   KLRK+GG  LA  D PE GP FG+D   + +++ S R+ RSKLGSYYER P   GG ++F  G  G S  + DLK Y GVY  GE IPF DA PF+L
Sbjct:   83 DKIFSVFFGKKEATPMG-MKRFGRERFPEQYPAVLDEWAEPVASDDKDMAVLRPMLKNTNLETRGLKLTYSANRDGWDPVSFHRKVDKLGGGLVVCTTEDGLVCGGYNPKGWVGYGEARGSIAAFLYVFTKG-TSELPTKLRKVGGPSLAQQDLPETGPSFGADSLVIPLEKSSPRVARSKLGSYYERFPG--GGNTLF--GKRGSSVRLKDLKVYHGVYAEGEYIPFTDAEPFAL 312          
BLAST of mRNA_Ecto-sp13_S_contig726.18396.1 vs. uniprot
Match: A0A5J4YZD4_PORPP (TLDc domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZD4_PORPP)

HSP 1 Score: 229 bits (583), Expect = 1.800e-67
Identity = 121/235 (51.49%), Postives = 169/235 (71.91%), Query Frame = 2
Query:  359 KDDAPGGDLDRITVKKFPDQYPAEKILQAEPVQGDSKD--MAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTTKRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGM-------QEGSERMGRSKLGSYYERLPAAYGGASIFAPGDNGGSAEMVDLKAYVGVYERGEKIPFDDAIPFSL 1036
            K+  P G L R    KFP+ +PAE   QA+PV+GD KD  + +IRP++ +T L+ R ++ V+DA+ +GWK A+FH+ VD +GP +V+ +TKGGAVVGGY+PKGWVGYGE R  ++AFLFTW DGDT+KR++KLRKIG A +A  D+PE GP FG++G  + +        +G+ER+ R KLG+YY++LP   G  S+FA G+ G   E+V L+A+VG+Y   E+IPF DA+PFSL
Sbjct:   75 KEKTPFG-LARFDRDKFPELWPAELEEQADPVEGDEKDPDLQLIRPMMARTSLQTRPMECVFDAEVHGWKAASFHRCVDKRGPAVVLARTKGGAVVGGYSPKGWVGYGESRGSIAAFLFTWPDGDTSKRSIKLRKIGMASMASMDQPESGPRFGAEGLTIPLLDARATEYDGTERVARCKLGTYYDKLPD--GSKSLFAHGE-GLLTELVSLRAFVGIYGSDEEIPFLDALPFSL 305          
BLAST of mRNA_Ecto-sp13_S_contig726.18396.1 vs. uniprot
Match: A0A7S2ZTI4_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZTI4_9RHOD)

HSP 1 Score: 223 bits (568), Expect = 1.310e-65
Identity = 117/243 (48.15%), Postives = 165/243 (67.90%), Query Frame = 2
Query:  329 EKFFTMFFGNKDDAPGGDLDRITVKKFPDQYPAEKILQAEPVQGDSKDMAVIRPLLKQTELEFRKLKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGYGEYRPGLSAFLFTWRDGDTTKRAMKLRKIGGAGLAVWDKPECGPLFGSDGFGVGMQ-------EGSERMGRSKLGSYYERLPAAYGGASIFAPGDNGGSAEMVDLKAYVGVYERGEKIPFDDAIPFSL 1036
            EK F + FG +++ P G   R    +FP+QY A     A+PV  D+++MA+ RP+L +T+L  R+L+L+YDA+ +GW  +AFH+ V+ KG G+V+  T+GG V GGYNPKGWVGYGE R  L++FLFTW  GDT+K A+KLRK+GG  ++V D PE GP FG+DG  V +        +GSE++  SKLG++YE  P   G   +F+  + G   ++V L+AY GVYE GE+IPFDDA+P +L
Sbjct:   40 EKLFGLIFGKQEETPLG-FQRFDRDRFPEQYEATLDEFADPVASDTEEMALFRPMLARTQLVTRELQLLYDAEEHGWTASAFHECVNKKGAGVVLAVTEGGTVCGGYNPKGWVGYGESRGSLASFLFTWPGGDTSKPAIKLRKVGGKSMSVLDDPETGPKFGADGLVVMLMSPFQTELDGSEKIASSKLGTFYEVRPD--GVRHLFSKAE-GKKTKLVSLRAYFGVYEEGEEIPFDDAVPVAL 278          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig726.18396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBZ9_ECTSI6.560e-20188.20TLDc domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6V1NAM7_HETAK1.760e-10066.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YK91_9STRA4.050e-9261.22TLDc domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S4EVG5_CHRCT2.470e-7453.39Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A7S0DY99_9CRYP2.790e-6952.87Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A0M0JKV5_9EUKA2.120e-6852.81TLDc domain-containing protein n=1 Tax=Chrysochrom... [more]
A0A7S1TFM7_9RHOD3.950e-6851.22Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A448ZH24_9STRA5.700e-6852.97TLDc domain-containing protein n=2 Tax=Pseudo-nitz... [more]
A0A5J4YZD4_PORPP1.800e-6751.49TLDc domain-containing protein n=1 Tax=Porphyridiu... [more]
A0A7S2ZTI4_9RHOD1.310e-6548.15Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig726contigEcto-sp13_S_contig726:1725..7232 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score573.9
Seed ortholog evalue4.6e-161
Seed eggNOG ortholog2880.D8LBZ9
Model size1568
Hectar predicted targeting categorysignal peptide
Exons7
EggNOG free text desc.TLD
EggNOG OGs2BGQI@1,2S19X@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-20_003910.1
Cds size969
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig726.18396.1prot_Ecto-sp13_S_contig726.18396.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig726 2251..7159 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463993.5707026-UTR-Ecto-sp13_S_contig726:1724..22501681463993.5707026-UTR-Ecto-sp13_S_contig726:1724..2250Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig726 1725..2250 -
1681463993.655384-UTR-Ecto-sp13_S_contig726:7159..72321681463993.655384-UTR-Ecto-sp13_S_contig726:7159..7232Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig726 7160..7232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463993.5822635-CDS-Ecto-sp13_S_contig726:2250..24131681463993.5822635-CDS-Ecto-sp13_S_contig726:2250..2413Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig726 2251..2413 -
1681463993.5925078-CDS-Ecto-sp13_S_contig726:2613..27351681463993.5925078-CDS-Ecto-sp13_S_contig726:2613..2735Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig726 2614..2735 -
1681463993.602879-CDS-Ecto-sp13_S_contig726:3548..36601681463993.602879-CDS-Ecto-sp13_S_contig726:3548..3660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig726 3549..3660 -
1681463993.6131313-CDS-Ecto-sp13_S_contig726:4238..43711681463993.6131313-CDS-Ecto-sp13_S_contig726:4238..4371Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig726 4239..4371 -
1681463993.6234398-CDS-Ecto-sp13_S_contig726:5002..51721681463993.6234398-CDS-Ecto-sp13_S_contig726:5002..5172Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig726 5003..5172 -
1681463993.6334867-CDS-Ecto-sp13_S_contig726:6685..68591681463993.6334867-CDS-Ecto-sp13_S_contig726:6685..6859Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig726 6686..6859 -
1681463993.6447563-CDS-Ecto-sp13_S_contig726:7064..71591681463993.6447563-CDS-Ecto-sp13_S_contig726:7064..7159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig726 7065..7159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig726.18396.1

>prot_Ecto-sp13_S_contig726.18396.1 ID=prot_Ecto-sp13_S_contig726.18396.1|Name=mRNA_Ecto-sp13_S_contig726.18396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=323bp
MRTPGTTALLWSCLQGVNSFTVPPQALGKTHRSLSAPSSAAVVTRVEHED
RTCCTSSSRGSSSTRVRAKGGAGEEEAGEEQQDIIEKFFTMFFGNKDDAP
GGDLDRITVKKFPDQYPAEKILQAEPVQGDSKDMAVIRPLLKQTELEFRK
LKLVYDAKRNGWKPAAFHKGVDFKGPGLVVGKTKGGAVVGGYNPKGWVGY
GEYRPGLSAFLFTWRDGDTTKRAMKLRKIGGAGLAVWDKPECGPLFGSDG
FGVGMQEGSERMGRSKLGSYYERLPAAYGGASIFAPGDNGGSAEMVDLKA
YVGVYERGEKIPFDDAIPFSLS*
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mRNA from alignment at Ecto-sp13_S_contig726:1725..7232-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig726.18396.1 ID=mRNA_Ecto-sp13_S_contig726.18396.1|Name=mRNA_Ecto-sp13_S_contig726.18396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5508bp|location=Sequence derived from alignment at Ecto-sp13_S_contig726:1725..7232- (Ectocarpus species13 EcNAP12_S_4_19m)
TGCTCCCGCGTCCTGCTTCCTGCTCGTGGTTGTTTTCCTCGCAGGAGTTA TCGTTAGGGGTTAGATACATACCATGCGGACACCAGGAACAACAGCTCTC TTGTGGTCTTGTCTTCAGGGTGTGAACTCGTTCACGGTACCTCCACAAGC ATTGGGCAAGACGCACAGGTAACAAGCACGTAATGCTGTTGGGGTGGAAC AACAGCAGCATCTCTTCTGCGCCCGTGTTCGCCTCGTCAAGACTCACGCA GAGACAGCAGGGGCGCCTGACACGCACACCGTGGAAGGACCTACTTGTGT TCCTCCGCGTTCATCACAGGTTCCCAACCTAAGGACCGGGAACTGCTCCA CGGTACTGCTACTGCTTTTGCAGGTCCCTTTCTGCACCAAGCTCAGCTGC CGTCGTCACGCGGGTTGAACATGAAGATCGTACATGCTGTACCAGCAGCA GCAGGGGCAGCAGCAGCACACGCGTGAGGGCAAAGGGAGGTGCGGGCGAG GAAGAGGCAGGGGAAGAACAACAGGATATCATCGAGAAGTTTTTCACGTG CGTGGTCATACACCAGGGGCCAAGGGGTGGTCTTTGTCTTGTAGTTGCCC CGCTTCGTGTGCATGTGATGACGTCCTCTTTATCATTTTACGTACGCCCA AACAACAGAAGGGGATCCTGCAAAATACCTGGTTGCTCTGTGCACTAGGG AGAATTTTTGGCATGGAATGTGTTACTTGTTTCGTGCTTTTTCTAGGGGT CGTTAGTTATTCAACCACTGGTGATCTTTCTGAGCGATGCGAGGGTGACC TTGGTTTTCAACAAAAAAGCACACGCTGCTGTGGATGCGCAGCACAGCAG TACGTCCCTCGGCAGAAAATGAGGGTACCACAACTGGCGAGACGGCGGTG TTGGAGCACGACGTAGGTTCCGTGAAGAGAAAGCCCAGAGAGGGATCACT GGAGCGTTTGGGCTTTTGCATGTGATGTGGGGGAAGCCAAACCCGTGGAA AAGCGTTGCGTCGTTACGGCCTAGTTAACCAATCGCCTGGCCTCACAAGA TGTTCATGTGTGACCTTTACCCCTGCGACCTGCTTTCCCGATCGCATGCC CAACCTAAGACACGAAATGAAATCATGAGCAGGAAGTTTGTTGTGTATCC GCCCTTCATCTCGGTTTAACTTTGAATAGCCGACCTTGAAGGGCCAGTTT AAGCGCCGGAAGCCGGAGCTAGATGTCGCCATTCTGAAGTACCCCCCCCC CTGGTTTCGCGAGGATTATATCTAAGCTCCCGCCGTGTCCCTTATAGTGT AGTCGTACGCCGATCACACCGTGATGATGACGATTTCCCGTCGACGATAT GTGAAGCACACGCTCACTGCAGCGAACGCAGCCACATCACAACGCCACCA AGACAGCAACGCAACAGTGTAGGCGTAGTCTTGGTAGGCTACAGCAGCAG CAGCACGGCAAAACACGCGTATGATGCGTGTGAACGTAAGAAGCGCAACC ATCGTGGCAACCTCGCTTGGTCATTGAGGTGTACCAACAAGCACTTATTG GCGGACCTTCGACGGATACTAATAAACAACGTTTTCCTTTTCTTGAGTTT TATGCTCAATCGCACGAGACCTAGCTATACACGAGCTTGAGCGGTTGCCC ATCCGAGCCATGCCGATGCGCTATGTGCCAACACATAGCTAAGAACAGCA GTTTGCGCTGAGAGCGTGCGTGCGTACCGGCAGCTACACGTCTGTGTTTT GAAAGCAATGACGCTATGTCGTATCTACAAGCGGGCGGAGGCCGCCGGAT CCCTGTTGCGGCGACGCAGCAAGCGTGATTGATTGTTTTGACGACATGAC AAGACCCTGCTGCACGATCTTCGGTTTGCTTGACGCCCTCTGGAAAGGCT GCCCCAGCGTGCGAACACAGGTGGACGGTGGTACCTGTCGCCCCAGAGTA GGTAGTCAAGGTTACCACCGCTGCTCTCCATAAACCCAGTGCTTGCCGCT ACTGCTGCTGCTGCTGCTGGTACCCTGCCCCACCCGCTTCATTTTCTTCC CCACATGCAGCATGTTTTTCGGGAACAAGGACGATGCGCCGGGAGGAGAC CTGGATCGCATCACGGTCAAGAAGTTTCCGGACCAGTACCCCGCCGAGAA AATTCTCCAGGCAGAGCCGGTTCAAGGGGACTCCAAAGACATGGCCGTCA TCCGGCCGCTGCTCAAGCAAACCGAGCTAGGTGTGAAACGCGAAGACGTG GCTGCTGCTGCTGCTGCTGTTGTTGGCTCCATACTTGGAAAATCTGTCCT GGTCTCTGCCTAACAGGGCCTTCTATCATCCGTTATTACGATGATCCGAA CTGGGAGTAGCTTGTCGTATAGGCGTGTCTGGATAGGGTATCGGCAATCG GCGGGCTCGCGACAAGGAGAAAGTTTTTTTTGTATTAACCTCGCCTCATC CTCTCACGCACGTCCCAATCCGCGGGCGAGGCGATACGCAATAGGGGTAA ACCCCTAGGACACCCTAGAAATGTCCATACCACGCACCTCACCAATTACC CGGTATTCCTCTCTATCACATGCAATGGGAACATACCGTACCATCCACTT GTCATTTTGCTAACAGTATCGCCATCATTCGTTCCGGTTTCAGCTGACGC GGACACCTTCCGTGGTCACCGCCCTACCAAAGGTAACATTCTGGTAACAC TTTTTTTTTCAGCGCTAGCAAGCATTCCCACGTGTTGCTAAAAAGTGGTC AGACCCCAAACCCTTATTTCAAGAGGTCACGTGCGAAAACGACGGTTGTT CTGTTTACCCTTTGTTCTGCTGGGCCGCTGCTACGTATCTGGCATCTCCT TCTTGAAACAGAATTCCGGAAGCTCAAGCTGGTGTACGACGCGAAGCGAA ACGGGTGGAAACCCGCTGCATTCCATAAGGGGGTGGATTTCAAGGGCCCC GGGCTCGTGGTGGGCAAAACCAAGGGAGGGGCCGTCGTTGGCGGGTACGT CAGAGAGTATAACGTAGGCTGCATAGGGTACAACCGTATCCCTTGGACCG CATTTCGAATTTCAACGCTCGAATGCTCAACGACGACGAAGCTGTGTAAT CATACTGATAAGTTTTCGGAAAGGTCTCGCCGAGACAGTTCCAACGCCGC CATTTCCGGCACCGCTACTACGGTTGCTTTTCCTGCCAAGGAGTGTTCGA GTTGTGAAAATCGGTCCAGGGGGTGTGATGTCTTAGGTCCATTGGGTATG ATATCTTGGGTCATGTCACCTACGGTTACACGAAAGCACAAAGACAGGCG GCACGAGGCTATGTACAACAGGCGTCGCGTACGGAAGGGGCAATGTCGTC AATAGCTTTCATCATTTTTCAATCGATTTGTTTCTTATCAAAATGGTGAA TTTCCACACACAACACCAATCAATCGCTGTGTTGGAATTTGTACAACATA TCCGTGTGATGTTTTGTGTTTTCGGCAAGTGGCGAAGGCCATGTTGTCGG TTTTCAAAGGACTCACCTTAACACACGCAACGCGATCTAACGTAACAAAT CACGTACGCGTGTCCGGCGCAGGTACAACCCGAAAGGGTGGGTGGGGTAC GGCGAGTACAGACCGGGCTTGTCGGCCTTCTTGTTCACGTGGCGGGACGG GGACACCACCAAGAGAGCGATGAAGCTCAGAAAGGTCAGCCACAAGGTTG TGGTGCGAAGCTTGTGAAAACGCTTCGGGTGCTTCGACGAGGGCGGGGGG GAGGAGGCAGTGGGAATTGGTGATGTGGCTAATGGCCATGCCGTGTCGCA CCGGGCAGAGTACGCTTTCATTTTCGACGCGGGGGGGGGAGCACCGACCA CAAACGTTGTCACAGATTTTACTGGCTTTTCTGTACTCTCTTGTTTGCTT GCTCTTTGCGTCCTTGTTCGAACAGCTCCCAACACTCAAAATACCTTTTC ATTCGTGGTGATACTCGACAGATAAAAGGACCGAGTTGGATGAGTGTAAG TACGTGCGTTCATCGGAGCTACGCGCCTCCCATGACCGTCACGATACCCC TCGCCCTGCCCCAAACCTACCGCTCAATATAGGACAGCAGAGAGCACCCA AATATTCTCGGTATCTCCTCTAGGAGATAAAACAGGTATGATCCGCTTCG AAAGGGGCACATGCGCCGTAGATAACCAAAGTGGGTTAGAGACGAGTAAT TGTGTCGTACTCCCCCTCGGGCCCGTTGTTTTCAAGCCCTTTGCCAAGAT CCGGCAGATGTAGAACGCGATTGTGTTGCTGTTCCGCCGCCTTTCGCATA TTTTCGATTGCTTTTTATGCCTCCGATTTCGTCCTTCAGAGCGGTGGCGT GGCTCTGCCGTCGATACCTGTACCTCAATAGCACTCCCAAGATATGACCG ACATCCCACCCCTCCCCATCCTTAGTGGATCCTGATCAAACCCCGTGCGC CCTTCTTATCCTTCGGTTCCGCCGCTTACCTTGTGTGTCGACGGTAGATT GGGGGGGCGGGGCTCGCTGTCTGGGATAAGCCGGAGTGCGGTCCTTTGTT CGGCTCGGATGGTTTCGGGGTGGGGATGCAGGAGGGCTCGGAGCGAATGG GCAGGAGTAAGCTGGGCAGGTGTGTGTATGTGTTTTTTTAGCTTCCATAG CATCGACCGCGCTAGTCGGCTCACCAATTGTATACGGTGTGCTTTCTGAT CCTCTGTGTTGCTAGCGTCGATTGTGTCACCATTAACACGATTGATCGGA AGCCTTGCCCCCGTCCTCGTCGCCCACTGCTTCGGCCGCCGGTATGTTTT TGCGATGCCACGCGAATAGCTACTACGAGCGGCTTCCTGCTGCCTACGGA GGGGCGAGCATCTTCGCCCCGGGAGACAACGGCGGCTCCGCGGAAATGGT TGATCTCAAGGCGTACGTGGGCGTGTACGAGAGGGGGGAGAAGATTCCCT TCGACGACGCGATTCCTTTCTCTCTCAGCTGATCTGCATCCCGTCTGTTT TGGGTATTGGCGGAACTTCGATGGGGGACGTCGCTTGTATTCTCCTTGTC GGTGGTACAACACGAGTTAGCCGAGGGACCCCTTAGACCTTAAACGGCAG CAGTGTCCGAACGATGCCGGTTTCTGGGCTGGCATAGAGTGATGTATCAC AGGATGAGTCATGTTATTTTCAGCTTTTTGGCCTTTCCCCAATACCTTGA AACCAATATTGTTTGCTCCTGTCAACATGTGTTGAGCGCTCAATATGTGA CCGCTTCGGTGTGTTGTTTGACCTTGTTTGACCGCATCCATCCACGTTCC TCGTGTTCTCGTCCAGGCGCACCAAAGCTAGGTCAGCCCCCATTGAACGA AAGGAAACGAGTGTATTGGCAGCTACTGCTGCTGCGTATGTGGCAGCAGT TTTTGGGTCAGCTTGCCGCTTATTTATGACGTCGTGACGTTTCATCCCGC CCACTGGAGAGTCGAACTCTGGTTGTGATCCAGCCGATCCTCGTTACGGG GAAGAGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig726:1725..7232-

>mRNA_Ecto-sp13_S_contig726.18396.1 ID=mRNA_Ecto-sp13_S_contig726.18396.1|Name=mRNA_Ecto-sp13_S_contig726.18396.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=969bp|location=Sequence derived from alignment at Ecto-sp13_S_contig726:1725..7232- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGACACCAGGAACAACAGCTCTCTTGTGGTCTTGTCTTCAGGGTGT
GAACTCGTTCACGGTACCTCCACAAGCATTGGGCAAGACGCACAGGTCCC
TTTCTGCACCAAGCTCAGCTGCCGTCGTCACGCGGGTTGAACATGAAGAT
CGTACATGCTGTACCAGCAGCAGCAGGGGCAGCAGCAGCACACGCGTGAG
GGCAAAGGGAGGTGCGGGCGAGGAAGAGGCAGGGGAAGAACAACAGGATA
TCATCGAGAAGTTTTTCACCATGTTTTTCGGGAACAAGGACGATGCGCCG
GGAGGAGACCTGGATCGCATCACGGTCAAGAAGTTTCCGGACCAGTACCC
CGCCGAGAAAATTCTCCAGGCAGAGCCGGTTCAAGGGGACTCCAAAGACA
TGGCCGTCATCCGGCCGCTGCTCAAGCAAACCGAGCTAGAATTCCGGAAG
CTCAAGCTGGTGTACGACGCGAAGCGAAACGGGTGGAAACCCGCTGCATT
CCATAAGGGGGTGGATTTCAAGGGCCCCGGGCTCGTGGTGGGCAAAACCA
AGGGAGGGGCCGTCGTTGGCGGGTACAACCCGAAAGGGTGGGTGGGGTAC
GGCGAGTACAGACCGGGCTTGTCGGCCTTCTTGTTCACGTGGCGGGACGG
GGACACCACCAAGAGAGCGATGAAGCTCAGAAAGATTGGGGGGGCGGGGC
TCGCTGTCTGGGATAAGCCGGAGTGCGGTCCTTTGTTCGGCTCGGATGGT
TTCGGGGTGGGGATGCAGGAGGGCTCGGAGCGAATGGGCAGGAGTAAGCT
GGGCAGCTACTACGAGCGGCTTCCTGCTGCCTACGGAGGGGCGAGCATCT
TCGCCCCGGGAGACAACGGCGGCTCCGCGGAAATGGTTGATCTCAAGGCG
TACGTGGGCGTGTACGAGAGGGGGGAGAAGATTCCCTTCGACGACGCGAT
TCCTTTCTCTCTCAGCTGA
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