mRNA_Ecto-sp13_S_contig72525.18387.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72525.18387.1
Unique NamemRNA_Ecto-sp13_S_contig72525.18387.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig72525.18387.1 vs. uniprot
Match: D7G7P0_ECTSI (Glycine/D-amino acid oxidase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7P0_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 1.680e-43
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLI 219
            SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLI
Sbjct:    5 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLI 77          
BLAST of mRNA_Ecto-sp13_S_contig72525.18387.1 vs. uniprot
Match: A0A6H5L433_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L433_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 5.540e-38
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLI 219
            SGMQSPLSFGGFACLTRH+KRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERV ANLI
Sbjct:  471 SGMQSPLSFGGFACLTRHMKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVGANLI 543          
BLAST of mRNA_Ecto-sp13_S_contig72525.18387.1 vs. uniprot
Match: A0A7S0F7P2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia arenysensis TaxID=697910 RepID=A0A7S0F7P2_9STRA)

HSP 1 Score: 100 bits (249), Expect = 4.780e-23
Identity = 47/73 (64.38%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLI 219
            SG+QSPLSFGGF  LTRH+ RI  A+SEALE DLL K  LGL+N YQP+L++ WMFQK+MSV +GE VD   +
Sbjct:  584 SGIQSPLSFGGFGALTRHLDRIGGAISEALENDLLHKDDLGLINDYQPNLSAAWMFQKAMSVKMGENVDPKFV 656          
BLAST of mRNA_Ecto-sp13_S_contig72525.18387.1 vs. uniprot
Match: A0A7S3PA49_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3PA49_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 9.590e-23
Identity = 44/73 (60.27%), Postives = 59/73 (80.82%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLI 219
            SG+QSPLSFGGF  LTRH++RIS A+ +AL  DLL K+ LG +NAY P+L++TWMFQ+SMSV +G+ VD+  +
Sbjct:   50 SGIQSPLSFGGFGALTRHLERISGAVHDALADDLLHKEDLGKINAYTPNLSATWMFQRSMSVRMGQSVDSKFV 122          
BLAST of mRNA_Ecto-sp13_S_contig72525.18387.1 vs. uniprot
Match: K8EY35_9CHLO (FAD dependent oxidoreductase n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8EY35_9CHLO)

HSP 1 Score: 97.8 bits (242), Expect = 4.180e-22
Identity = 44/65 (67.69%), Postives = 56/65 (86.15%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVG 195
            SGMQSPLSFGG AC+ RH+ RIS AL+EALE D++DKK+LG +NAYQP+L++ W+FQ+ MSV VG
Sbjct:  451 SGMQSPLSFGGLACMLRHLPRISLALTEALEADIVDKKALGTINAYQPALSAAWLFQRCMSVQVG 515          
BLAST of mRNA_Ecto-sp13_S_contig72525.18387.1 vs. uniprot
Match: A0A7S2N0B1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N0B1_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 6.030e-22
Identity = 42/73 (57.53%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLI 219
            SG+QSPLSFGGF  LTRH++R+S+ +SEALE D L K  L  +NAY P+L++ WMFQK+MSV +G+ VD   +
Sbjct:   52 SGIQSPLSFGGFGALTRHLERLSDGISEALEADCLHKDDLAEINAYTPNLSAAWMFQKAMSVRMGQNVDPKFV 124          
BLAST of mRNA_Ecto-sp13_S_contig72525.18387.1 vs. uniprot
Match: A0A1Z5KQS6_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQS6_FISSO)

HSP 1 Score: 96.7 bits (239), Expect = 1.080e-21
Identity = 45/73 (61.64%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLI 219
            SG+QSPLSFGGF  LTRH+ RI+ A+SEALE DLL K  LG +N Y P+L++TWMFQK+MSV  G++ DA+ +
Sbjct:  985 SGIQSPLSFGGFGALTRHLSRITGAVSEALELDLLHKDDLGAINPYTPNLSATWMFQKAMSVKPGQKTDADFV 1057          
BLAST of mRNA_Ecto-sp13_S_contig72525.18387.1 vs. uniprot
Match: A0A7S3QIW6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QIW6_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.460e-21
Identity = 44/73 (60.27%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLI 219
            SG+QSPLSFGGF  LTRH++R+S A+ EAL  DLL K+ LG +NAY P+L++ WMFQK+MSV +G+ VD+  I
Sbjct:  476 SGIQSPLSFGGFGALTRHLERVSGAVDEALRYDLLTKEDLGEINAYTPNLSAAWMFQKAMSVRIGQNVDSKFI 548          
BLAST of mRNA_Ecto-sp13_S_contig72525.18387.1 vs. uniprot
Match: A0A7S2XQ48_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XQ48_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.520e-21
Identity = 44/73 (60.27%), Postives = 55/73 (75.34%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLI 219
            SG+QSPLSFGGF  LTRH++RIS A+ EALE D L K  L  +NAY P+L++ WMFQK+MSV VG+ VD   +
Sbjct:  220 SGIQSPLSFGGFGALTRHLERISNAIVEALEDDCLHKDDLAEINAYTPNLSAAWMFQKAMSVRVGQNVDPKFV 292          
BLAST of mRNA_Ecto-sp13_S_contig72525.18387.1 vs. uniprot
Match: A0A7S1ZFZ8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZFZ8_TRICV)

HSP 1 Score: 95.1 bits (235), Expect = 2.650e-21
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    1 SGMQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKKSLGLVNAYQPSLTSTWMFQKSMSVGVGERVDANLI 219
            SG+QSPLSFGGF  LTRH+ RIS A+SEALE   L K  LGL+NAY P+L++ WMFQK+MSV +G+ VD+  +
Sbjct:  260 SGIQSPLSFGGFGALTRHLGRISGAVSEALETGCLHKSDLGLINAYTPNLSAAWMFQKAMSVRMGQDVDSKFV 332          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72525.18387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7P0_ECTSI1.680e-43100.00Glycine/D-amino acid oxidase-like protein n=1 Tax=... [more]
A0A6H5L433_9PHAE5.540e-3897.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S0F7P2_9STRA4.780e-2364.38Hypothetical protein n=1 Tax=Pseudo-nitzschia aren... [more]
A0A7S3PA49_9STRA9.590e-2360.27Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
K8EY35_9CHLO4.180e-2267.69FAD dependent oxidoreductase n=1 Tax=Bathycoccus p... [more]
A0A7S2N0B1_9STRA6.030e-2257.53Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A1Z5KQS6_FISSO1.080e-2161.64Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S3QIW6_9STRA1.460e-2160.27Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2XQ48_9STRA1.520e-2160.27Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S1ZFZ8_TRICV2.650e-2161.64Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72525contigEcto-sp13_S_contig72525:6..608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop0
Start1
Seed ortholog score94.0
Seed ortholog evalue3.1e-17
Seed eggNOG ortholog41875.XP_007515294.1
Model size219
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28PI8@1,2QW6A@2759,34K15@3041,37M1W@33090
Cds size213
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463992.9123876-CDS-Ecto-sp13_S_contig72525:5..1401681463992.9123876-CDS-Ecto-sp13_S_contig72525:5..140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72525 6..140 -
1681463992.9242582-CDS-Ecto-sp13_S_contig72525:524..6021681463992.9242582-CDS-Ecto-sp13_S_contig72525:524..602Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72525 525..602 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463992.9347222-UTR-Ecto-sp13_S_contig72525:602..6081681463992.9347222-UTR-Ecto-sp13_S_contig72525:602..608Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig72525 603..608 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72525.18387.1prot_Ecto-sp13_S_contig72525.18387.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72525 6..602 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72525.18387.1

>prot_Ecto-sp13_S_contig72525.18387.1 ID=prot_Ecto-sp13_S_contig72525.18387.1|Name=mRNA_Ecto-sp13_S_contig72525.18387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=71bp
MQSPLSFGGFACLTRHVKRISEALSEALEGDLLDKKSLGLVNAYQPSLTS
TWMFQKSMSVGVGERVDANLI
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mRNA from alignment at Ecto-sp13_S_contig72525:6..608-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72525.18387.1 ID=mRNA_Ecto-sp13_S_contig72525.18387.1|Name=mRNA_Ecto-sp13_S_contig72525.18387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72525:6..608- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGGCATGCAGAGCCCTCTCTCTTTCGGGGGCTTCGCTTGCCTCACAAG GCATGTCAAGCGAATTTCGGAGGCCCTGTCCGAGGTGAGCCTGCATCGTT TGTCGGCTCGCTTTTTGGATCTTCGGTTGTGTTCGTTCGTTTTCTTTCTT TTTTTTTTTGTTCTTTTCTGTGCGTTTTGCTCTGCCTTGCTTTGCTCTGC CGTACTTTTGATGTTCCTTGTTTCGCTGTGCTCAGTTTGTCTTGCCCTTG CCTGGGATTTGTTTCGATATTGTGCCCGAACTCAGTTTTATTCTTCGTCA TTCTCTCTATTGTGATCCTCTCTAGTTCGTCGCCCTCTGTGCCGGTTCGT TATTCGTGTGCTCGGCGGTTTACTAGCCATGCACGACTACGGCCTCGAAA ACCACTAATTCCACCATGTGACCACGCTGTTCAATGTCGACCACACGTGA CCCCCTTTCCCTTGCCAGGCGCTAGAGGGAGACCTACTGGACAAGAAGTC GCTCGGCCTGGTGAACGCCTACCAGCCCTCACTGACCTCGACGTGGATGT TCCAGAAGTCGATGAGCGTTGGGGTCGGAGAGAGGGTGGACGCCAACCTC ATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72525:6..608-

>mRNA_Ecto-sp13_S_contig72525.18387.1 ID=mRNA_Ecto-sp13_S_contig72525.18387.1|Name=mRNA_Ecto-sp13_S_contig72525.18387.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=213bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72525:6..608- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAGCCCTCTCTCTTTCGGGGGCTTCGCTTGCCTCACAAGGCATGT
CAAGCGAATTTCGGAGGCCCTGTCCGAGGCGCTAGAGGGAGACCTACTGG
ACAAGAAGTCGCTCGGCCTGGTGAACGCCTACCAGCCCTCACTGACCTCG
ACGTGGATGTTCCAGAAGTCGATGAGCGTTGGGGTCGGAGAGAGGGTGGA
CGCCAACCTCATC
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