mRNA_Ecto-sp13_S_contig72202.18348.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72202.18348.1
Unique NamemRNA_Ecto-sp13_S_contig72202.18348.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72202.18348.1 vs. uniprot
Match: A0A813A117_9DINO (ALDH12A1 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813A117_9DINO)

HSP 1 Score: 81.3 bits (199), Expect = 3.670e-19
Identity = 33/36 (91.67%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR 108
            RTTGAPQNHWFGPAGDPRAAGIG+IEAI++VWSCHR
Sbjct:   42 RTTGAPQNHWFGPAGDPRAAGIGSIEAIQLVWSCHR 77
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BLAST of mRNA_Ecto-sp13_S_contig72202.18348.1 vs. uniprot
Match: A0A7J6UUN2_THATH (Delta-1-pyrroline-5-carboxylate dehydrogenase 12a1 protein n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6UUN2_THATH)

HSP 1 Score: 79.3 bits (194), Expect = 1.420e-18
Identity = 33/36 (91.67%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR 108
            RTTGAPQNHWFGPAGDPR AGIGT EAIR VWSCHR
Sbjct:   27 RTTGAPQNHWFGPAGDPRGAGIGTPEAIRFVWSCHR 62
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BLAST of mRNA_Ecto-sp13_S_contig72202.18348.1 vs. uniprot
Match: A0A6H5J7Q9_9PHAE (Aldedh domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7Q9_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.620e-18
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR 108
            RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR
Sbjct:  410 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR 445
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BLAST of mRNA_Ecto-sp13_S_contig72202.18348.1 vs. uniprot
Match: D7G0R3_ECTSI (Aldehyde Dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R3_ECTSI)

HSP 1 Score: 85.5 bits (210), Expect = 1.770e-18
Identity = 36/36 (100.00%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:    1 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR 108
            RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR
Sbjct:  487 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR 522
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BLAST of mRNA_Ecto-sp13_S_contig72202.18348.1 vs. uniprot
Match: C7J2F0_ORYSJ (Os05g0536400 protein (Fragment) n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=C7J2F0_ORYSJ)

HSP 1 Score: 79.0 bits (193), Expect = 2.630e-18
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR 108
            RTTGAPQNHWFGPAGDPR AGIGT EAI++VWSCHR
Sbjct:   37 RTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHR 72
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BLAST of mRNA_Ecto-sp13_S_contig72202.18348.1 vs. uniprot
Match: A0A059LCG3_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LCG3_9CHLO)

HSP 1 Score: 80.1 bits (196), Expect = 4.270e-18
Identity = 33/36 (91.67%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR 108
            RTTGAPQNHWFGPAGDPR AGIGT EAIR+VWSCHR
Sbjct:   98 RTTGAPQNHWFGPAGDPRGAGIGTPEAIRLVWSCHR 133
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BLAST of mRNA_Ecto-sp13_S_contig72202.18348.1 vs. uniprot
Match: A0A1D6MB72_MAIZE (Putative aldehyde dehydrogenase MIS1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6MB72_MAIZE)

HSP 1 Score: 79.0 bits (193), Expect = 5.780e-18
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR 108
            RTTGAPQNHWFGPAGDPR AGIGT EAI++VWSCHR
Sbjct:   67 RTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHR 102
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BLAST of mRNA_Ecto-sp13_S_contig72202.18348.1 vs. uniprot
Match: A0A0D3AYE1_BRAOL (Uncharacterized protein n=4 Tax=Brassica TaxID=3705 RepID=A0A0D3AYE1_BRAOL)

HSP 1 Score: 79.0 bits (193), Expect = 1.080e-17
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR 108
            RTTGAPQNHWFGPAGDPR AGIGT EAI++VWSCHR
Sbjct:   92 RTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHR 127
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BLAST of mRNA_Ecto-sp13_S_contig72202.18348.1 vs. uniprot
Match: A0A835Z7L1_9STRA (Aldehyde dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.580e-17
Identity = 35/36 (97.22%), Postives = 35/36 (97.22%), Query Frame = 1 
Query:    1 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR 108
            RTTGAPQNHWFGPAGDPRAAGIGT EAIRMVWSCHR
Sbjct:  476 RTTGAPQNHWFGPAGDPRAAGIGTREAIRMVWSCHR 511
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BLAST of mRNA_Ecto-sp13_S_contig72202.18348.1 vs. uniprot
Match: A0A482SLA6_9ARCH (Aldehyde dehydrogenase family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SLA6_9ARCH)

HSP 1 Score: 79.0 bits (193), Expect = 2.130e-17
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:    1 RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR 108
            RTTGAPQNHWFGPAGDPR AGIGT EAI++VWSCHR
Sbjct:  122 RTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHR 157
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72202.18348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A813A117_9DINO3.670e-1991.67ALDH12A1 protein n=1 Tax=Symbiodinium sp. KB8 TaxI... [more]
A0A7J6UUN2_THATH1.420e-1891.67Delta-1-pyrroline-5-carboxylate dehydrogenase 12a1... [more]
A0A6H5J7Q9_9PHAE1.620e-18100.00Aldedh domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G0R3_ECTSI1.770e-18100.00Aldehyde Dehydrogenase n=1 Tax=Ectocarpus siliculo... [more]
C7J2F0_ORYSJ2.630e-1888.89Os05g0536400 protein (Fragment) n=1 Tax=Oryza sati... [more]
A0A059LCG3_9CHLO4.270e-1891.67Uncharacterized protein (Fragment) n=1 Tax=Helicos... [more]
A0A1D6MB72_MAIZE5.780e-1888.89Putative aldehyde dehydrogenase MIS1 n=1 Tax=Zea m... [more]
A0A0D3AYE1_BRAOL1.080e-1788.89Uncharacterized protein n=4 Tax=Brassica TaxID=370... [more]
A0A835Z7L1_9STRA1.580e-1797.22Aldehyde dehydrogenase n=1 Tax=Tribonema minus Tax... [more]
A0A482SLA6_9ARCH2.130e-1788.89Aldehyde dehydrogenase family protein n=1 Tax=arch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72202contigEcto-sp13_S_contig72202:9..116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score84.7
Seed ortholog evalue9.4e-15
Seed eggNOG ortholog2880.D7G0R3
Model size108
KEGG rclassRC00080,RC00216,RC00242,RC00255
KEGG koko:K00294
KEGG ReactionR00245,R00707,R00708,R04444,R04445,R05051
KEGG Pathwayko00250,ko00330,ko01100,map00250,map00330,map01100
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0003842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006082,GO:0006520,GO:0006536,GO:0006560,GO:0006562,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009063,GO:0009064,GO:0009065,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009987,GO:0010133,GO:0016054,GO:0016491,GO:0016645,GO:0016646,GO:0019752,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044444,GO:0044464,GO:0046395,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0055114,GO:0071704,GO:0072593,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
Exons1
EggNOG free text desc.succinate-semialdehyde dehydrogenase (NAD ) activity
EggNOG OGsCOG1012@1,KOG2451@2759
EC1.2.1.88
Cds size108
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463989.302793-CDS-Ecto-sp13_S_contig72202:8..1161681463989.302793-CDS-Ecto-sp13_S_contig72202:8..116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72202 9..116 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72202.18348.1prot_Ecto-sp13_S_contig72202.18348.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72202 9..116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72202.18348.1

>prot_Ecto-sp13_S_contig72202.18348.1 ID=prot_Ecto-sp13_S_contig72202.18348.1|Name=mRNA_Ecto-sp13_S_contig72202.18348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=36bp
RTTGAPQNHWFGPAGDPRAAGIGTIEAIRMVWSCHR
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mRNA from alignment at Ecto-sp13_S_contig72202:9..116-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72202.18348.1 ID=mRNA_Ecto-sp13_S_contig72202.18348.1|Name=mRNA_Ecto-sp13_S_contig72202.18348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72202:9..116- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGACTACGGGGGCACCGCAAAACCACTGGTTTGGCCCGGCGGGAGATCC
CCGCGCTGCAGGCATCGGCACCATCGAGGCTATCAGAATGGTCTGGTCTT
GCCACAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72202:9..116-

>mRNA_Ecto-sp13_S_contig72202.18348.1 ID=mRNA_Ecto-sp13_S_contig72202.18348.1|Name=mRNA_Ecto-sp13_S_contig72202.18348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=108bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72202:9..116- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGACTACGGGGGCACCGCAAAACCACTGGTTTGGCCCGGCGGGAGATCC
CCGCGCTGCAGGCATCGGCACCATCGAGGCTATCAGAATGGTCTGGTCTT
GCCACAGG
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