mRNA_Ecto-sp13_S_contig72159.18342.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72159.18342.1
Unique NamemRNA_Ecto-sp13_S_contig72159.18342.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig72159.18342.1 vs. uniprot
Match: D7FVI9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI9_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 4.990e-13
Identity = 57/168 (33.93%), Postives = 79/168 (47.02%), Query Frame = 1
Query:    1 TPIMHAAQEGHLSIVRRLCWRGADVTVGDLAVGATVLHLAAKGEHCSVLKALSSAWLDVDVRDHKNETPLFDAVENGQLPATKTLIALGADVNISD---------ATDDRTVLHLAVIGXXXXXXXXXXXXXA-GIDALDDCGATPLMLAATEGQ-LSVVKALLSAGA 471
            TP+M AA+ GH+ ++  L  +GAD T   L  G+T +  AA G +  ++ AL +   D D       TPL +A   G LP  KTL+   ADV ++            D+ T LH A  G                IDA+D  G T L LA   G+ L +++ LL AGA
Sbjct:   88 TPLMKAAENGHMPVMETLLDQGADATFRHLDDGSTSIIAAALGGYNEIVIALLNKGADKDSPAANGRTPLMEASRKGHLPVVKTLLNADADVTLAAHGLTDEDYCLGDNCTALHFATAGGHLGVVNALLSKGGLEIDAVDTDGTTALHLAVIMGRSLPIMETLLVAGA 255          
BLAST of mRNA_Ecto-sp13_S_contig72159.18342.1 vs. uniprot
Match: UPI00201EC82C (uncharacterized protein LOC124152553 n=1 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201EC82C)

HSP 1 Score: 75.1 bits (183), Expect = 9.110e-13
Identity = 53/159 (33.33%), Postives = 78/159 (49.06%), Query Frame = 1
Query:    1 TPIMHAAQEGHLSIVRRLCWRGADVTVGDLAVGATVLHLAAKGEHCSVLK-ALSSAWLDVDVRDHKNETPLFDAVENGQLPATKTLIALGADVNISDATDDRTVLHLAVIGXXXXXXXXXXXXXA-GIDALDDCGATPLMLAATEGQLSVVKALLSAGA 471
            TP+M AA +GH  +   L  +GADVT+ D      +LH+A  G H  ++K  LS   +D++ R     TPL  A ENG       L+  GA V++ D   +  +LH+A +G                I++ + CG TPLM+AA  G   V   L++  A
Sbjct: 1674 TPLMVAAVKGHRQVFDLLVTQGADVTLVDDGRN-NILHVACLGGHVDMVKYVLSQKIVDINSRGKHGRTPLMVAAENGHRQVFDLLVTRGAGVSLVDQLRNN-ILHVACLGGHVDMAKYIVSQKVTDINSREQCGRTPLMVAAENGHRQVFDLLVTESA 1830          
BLAST of mRNA_Ecto-sp13_S_contig72159.18342.1 vs. uniprot
Match: UPI00201F5BBC (inversin-like isoform X1 n=5 Tax=Haliotis rufescens TaxID=6454 RepID=UPI00201F5BBC)

HSP 1 Score: 72.8 bits (177), Expect = 4.760e-12
Identity = 56/159 (35.22%), Postives = 80/159 (50.31%), Query Frame = 1
Query:    1 TPIMHAAQEGHLSIVRRLCWRGADVTVGDLAVGATVLHLAAKGEHCSVLK-ALSSAWLDVDVRDHKNETPLFDAVENGQLPATKTLIALGADVNISDATDDRTVLHLAVIGXXXXXXXXXXXXX-AGIDALDDCGATPLMLAATEGQLSVVKALLSAGA 471
            TP+M AA EG + +V+ +   GADV++ D   G  +LH A  G     +K  LS   +D + R   + TP+  A  NGQ    + L++ GADV++ D   D  +LH A IG              A I++      TP+M AA  GQ  VV+ L+S GA
Sbjct:  248 TPVMTAAYEGQVDVVKIMVSEGADVSLVD-EYGDNILHFACVGGDVETVKFMLSLHVVDNNSRGGGSLTPVMKAAWNGQRDVVELLVSEGADVSLVDEVGDN-ILHWACIGGDVETVKFMLSLNVADINSRGRWSRTPVMEAAWNGQRDVVELLVSEGA 404          
BLAST of mRNA_Ecto-sp13_S_contig72159.18342.1 vs. uniprot
Match: UPI001EB0643C (ankyrin repeat and KH domain-containing protein 1-like isoform X1 n=2 Tax=Haliotis rufescens TaxID=6454 RepID=UPI001EB0643C)

HSP 1 Score: 72.0 bits (175), Expect = 6.510e-12
Identity = 55/159 (34.59%), Postives = 80/159 (50.31%), Query Frame = 1
Query:    1 TPIMHAAQEGHLSIVRRLCWRGADVTVGDLAVGATVLHLAAKGEHCSVLK-ALSSAWLDVDVRDHKNETPLFDAVENGQLPATKTLIALGADVNISDATDDRTVLHLAVIGXXXXXXXXXXXXX-AGIDALDDCGATPLMLAATEGQLSVVKALLSAGA 471
            TP+M AA EG + +V+ +   GADV++ D   G  +L  A  G     +K  LS   +D++ R   + TP+  A  NGQ    + L++ GADV++ D   D  +LH A IG              A I++      TP+M AA  GQ  VV+ L+S GA
Sbjct:  127 TPVMTAAYEGQVDVVKIMVSEGADVSLVD-EYGDNILRFACVGGDVETVKFMLSLHVVDINSRGGGSLTPVMKAAWNGQRDVVELLVSEGADVSLVDEVGDN-ILHWACIGGDVETVKFMLSLNVADINSRGRWSRTPVMEAAWNGQRDVVELLVSEGA 283          
BLAST of mRNA_Ecto-sp13_S_contig72159.18342.1 vs. uniprot
Match: A0A4W3GXX3_CALMI (SOCS box domain-containing protein n=4 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GXX3_CALMI)

HSP 1 Score: 69.7 bits (169), Expect = 5.930e-11
Identity = 50/145 (34.48%), Postives = 64/145 (44.14%), Query Frame = 1
Query:    4 PIMHAAQEGHLSIVRRLCWRGADVTVGDLAVGATVLHLAAKGEHCSVLKALSSAWLDVDVRDHKNETPLFDAVENGQLPATKTLIALGADVNISDATDDRTVLHLAVIGXXXXXXXXXXXXXAGIDALDDCGATPLMLAATEGQL 438
            PI  AA   HL  +R L              G T LHLAAK  H   +  L  A +D +    +N TPLF AVE G L   + L+  GA +N   ++   +V+H A                A  +A DD G TPL LAA  G+L
Sbjct:   80 PIHEAASRNHLRCLRLLLQTAPSTACIKTFEGETALHLAAKCGHLKNVNCLLKAGIDPNEVTKENTTPLFLAVEKGDLAVIRALLRHGARINGFHSSCLWSVVHQAAYQEHKEVLTFLLEKGADKEARDDYGITPLFLAAQYGKL 224          
BLAST of mRNA_Ecto-sp13_S_contig72159.18342.1 vs. uniprot
Match: A0A8C0FN60_BUBBB (KH domain-containing protein n=1 Tax=Bubo bubo TaxID=30461 RepID=A0A8C0FN60_BUBBB)

HSP 1 Score: 68.2 bits (165), Expect = 2.350e-10
Identity = 43/112 (38.39%), Postives = 56/112 (50.00%), Query Frame = 1
Query:    1 TPIMHAAQEGHLSIVRRLCWRGADVTVGD-----LAVGATVLHLAAKGEHCSVLKALSSAWLDVDVRDHKNETPLFDAVENGQLPATKTLIALGADVNISDATDDRTVLHLA 321
            TP+M AAQEGHL +V+ L   G   +VG       A G T L  A +  H  V   L  A  D++       TPL  A   G L   + LI+ GA+VN + A +D TV+ LA
Sbjct:  421 TPLMEAAQEGHLELVKYLLAAGICRSVGSNVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLA 532          
BLAST of mRNA_Ecto-sp13_S_contig72159.18342.1 vs. uniprot
Match: A0A0A9Y2G2_LYGHE (Uncharacterized protein n=2 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Y2G2_LYGHE)

HSP 1 Score: 67.4 bits (163), Expect = 4.270e-10
Identity = 51/167 (30.54%), Postives = 79/167 (47.31%), Query Frame = 1
Query:    1 TPIMHAAQEGHLSIVRRLCWRGADVTVGDLAVGATVLHLAAKG------EHCSVLKALSSAWLDVDVRDHKNETPLFDAVENGQLPATKTLIALGADVNISDATDDRTVLHLAVIGXXXXXXXXXXXXXA-----GIDALDDCGATPLMLAATEGQLSVVKALLSAG 468
            TPI  A + GHLS+ + L   GAD+ +     G+++LH + +       E C   +   S  + VD       TPL  A E G   A K L+  GA ++ + +  DR++LH AV+                     +D+    G TP++LAA +GQL ++K L+ AG
Sbjct: 1217 TPIHLATERGHLSVAKLLVEAGADMMIKSY--GSSILHFSCRSGDQSLIEWCLKTEHKQSLLICVD---RALRTPLHIAAEGGHFEAVKLLVDAGASISTT-SEGDRSLLHHAVMSGNNLLVEWLIQEGNVRKCFNVDSTMADGRTPILLAAEQGQLDIIKLLIDAG 1377          
BLAST of mRNA_Ecto-sp13_S_contig72159.18342.1 vs. uniprot
Match: A0A8C0C4B5_9AVES (KH domain-containing protein n=1 Tax=Buteo japonicus TaxID=224669 RepID=A0A8C0C4B5_9AVES)

HSP 1 Score: 66.6 bits (161), Expect = 8.050e-10
Identity = 43/114 (37.72%), Postives = 56/114 (49.12%), Query Frame = 1
Query:    1 TPIMHAAQEGHLSIVRRLCWRGADVTVG-------DLAVGATVLHLAAKGEHCSVLKALSSAWLDVDVRDHKNETPLFDAVENGQLPATKTLIALGADVNISDATDDRTVLHLA 321
            TP+M AAQEGHL +V+ L   G   +VG         A G T L  A +  H  V   L  A  D++       TPL  A   G L   + LI+ GA+VN + A +D TV+ LA
Sbjct:  360 TPLMEAAQEGHLELVKYLLAAGNCWSVGYRANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLA 473          
BLAST of mRNA_Ecto-sp13_S_contig72159.18342.1 vs. uniprot
Match: A0A8C0C1F0_9AVES (KH domain-containing protein n=1 Tax=Buteo japonicus TaxID=224669 RepID=A0A8C0C1F0_9AVES)

HSP 1 Score: 66.6 bits (161), Expect = 8.050e-10
Identity = 43/114 (37.72%), Postives = 56/114 (49.12%), Query Frame = 1
Query:    1 TPIMHAAQEGHLSIVRRLCWRGADVTVG-------DLAVGATVLHLAAKGEHCSVLKALSSAWLDVDVRDHKNETPLFDAVENGQLPATKTLIALGADVNISDATDDRTVLHLA 321
            TP+M AAQEGHL +V+ L   G   +VG         A G T L  A +  H  V   L  A  D++       TPL  A   G L   + LI+ GA+VN + A +D TV+ LA
Sbjct:  421 TPLMEAAQEGHLELVKYLLAAGNCWSVGYRANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLA 534          
BLAST of mRNA_Ecto-sp13_S_contig72159.18342.1 vs. uniprot
Match: A0A663EKX7_AQUCH (KH domain-containing protein n=1 Tax=Aquila chrysaetos chrysaetos TaxID=223781 RepID=A0A663EKX7_AQUCH)

HSP 1 Score: 66.6 bits (161), Expect = 8.070e-10
Identity = 43/114 (37.72%), Postives = 56/114 (49.12%), Query Frame = 1
Query:    1 TPIMHAAQEGHLSIVRRLCWRGADVTVG-------DLAVGATVLHLAAKGEHCSVLKALSSAWLDVDVRDHKNETPLFDAVENGQLPATKTLIALGADVNISDATDDRTVLHLA 321
            TP+M AAQEGHL +V+ L   G   +VG         A G T L  A +  H  V   L  A  D++       TPL  A   G L   + LI+ GA+VN + A +D TV+ LA
Sbjct:  528 TPLMEAAQEGHLELVKYLLAAGNCWSVGYRANVHATTATGDTALTYACENGHTDVADVLLQAGADLEHESEGGRTPLMKAARAGHLCTVQFLISKGANVNRATANNDHTVVSLA 641          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72159.18342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVI9_ECTSI4.990e-1333.93Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
UPI00201EC82C9.110e-1333.33uncharacterized protein LOC124152553 n=1 Tax=Halio... [more]
UPI00201F5BBC4.760e-1235.22inversin-like isoform X1 n=5 Tax=Haliotis rufescen... [more]
UPI001EB0643C6.510e-1234.59ankyrin repeat and KH domain-containing protein 1-... [more]
A0A4W3GXX3_CALMI5.930e-1134.48SOCS box domain-containing protein n=4 Tax=Callorh... [more]
A0A8C0FN60_BUBBB2.350e-1038.39KH domain-containing protein n=1 Tax=Bubo bubo Tax... [more]
A0A0A9Y2G2_LYGHE4.270e-1030.54Uncharacterized protein n=2 Tax=Lygus hesperus Tax... [more]
A0A8C0C4B5_9AVES8.050e-1037.72KH domain-containing protein n=1 Tax=Buteo japonic... [more]
A0A8C0C1F0_9AVES8.050e-1037.72KH domain-containing protein n=1 Tax=Buteo japonic... [more]
A0A663EKX7_AQUCH8.070e-1037.72KH domain-containing protein n=1 Tax=Aquila chrysa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72159contigEcto-sp13_S_contig72159:10..591 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score72.4
Seed ortholog evalue2.1e-10
Seed eggNOG ortholog4792.ETI31314
Model size471
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Cds size462
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463988.5554285-UTR-Ecto-sp13_S_contig72159:9..181681463988.5554285-UTR-Ecto-sp13_S_contig72159:9..18Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig72159 10..18 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463988.5656757-CDS-Ecto-sp13_S_contig72159:18..3761681463988.5656757-CDS-Ecto-sp13_S_contig72159:18..376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72159 19..376 +
1681463988.5742939-CDS-Ecto-sp13_S_contig72159:487..5911681463988.5742939-CDS-Ecto-sp13_S_contig72159:487..591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72159 488..591 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72159.18342.1prot_Ecto-sp13_S_contig72159.18342.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72159 19..591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72159.18342.1

>prot_Ecto-sp13_S_contig72159.18342.1 ID=prot_Ecto-sp13_S_contig72159.18342.1|Name=mRNA_Ecto-sp13_S_contig72159.18342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
MHAAQEGHLSIVRRLCWRGADVTVGDLAVGATVLHLAAKGEHCSVLKALS
SAWLDVDVRDHKNETPLFDAVENGQLPATKTLIALGADVNISDATDDRTV
LHLAVIGGHLPMVRCLINAGAGIDALDDCGATPLMLAATEGQLSVVKALL
SAGA
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mRNA from alignment at Ecto-sp13_S_contig72159:10..591+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72159.18342.1 ID=mRNA_Ecto-sp13_S_contig72159.18342.1|Name=mRNA_Ecto-sp13_S_contig72159.18342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72159:10..591+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCCCCATTATGCACGCGGCGCAGGAAGGGCACCTTTCCATCGTACGTCG CCTTTGTTGGCGCGGTGCAGACGTGACCGTCGGCGACCTCGCCGTGGGGG CCACCGTGCTACACCTAGCCGCTAAGGGAGAGCACTGCTCGGTGTTGAAG GCTCTTTCGTCTGCGTGGCTTGACGTAGATGTGCGCGACCACAAAAACGA GACCCCCCTGTTCGACGCGGTCGAGAACGGCCAGTTACCTGCCACCAAGA CTTTGATAGCGCTGGGGGCGGACGTCAACATCAGCGACGCCACCGACGAC CGCACCGTCCTTCACTTGGCCGTAATCGGCGGCCACCTGCCAATGGTGAG GTGTCTCATCAACGCCGGTGCCGATGTCCACACCAGGAACACCAACGGCG GCCGTACGGTAAGTGCAAGGTTGCACTTTGCTGCTTGCCAAGGGGGCGAT GAAATAATCGGCGCTCTATTGGCTGGAGGCGCGGGCATCGACGCGCTAGA CGACTGCGGCGCTACGCCGCTTATGTTGGCGGCCACGGAGGGGCAGCTGT CTGTCGTAAAAGCTCTACTTTCCGCCGGCGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72159:10..591+

>mRNA_Ecto-sp13_S_contig72159.18342.1 ID=mRNA_Ecto-sp13_S_contig72159.18342.1|Name=mRNA_Ecto-sp13_S_contig72159.18342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72159:10..591+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGCGGCGCAGGAAGGGCACCTTTCCATCGTACGTCGCCTTTGTTG
GCGCGGTGCAGACGTGACCGTCGGCGACCTCGCCGTGGGGGCCACCGTGC
TACACCTAGCCGCTAAGGGAGAGCACTGCTCGGTGTTGAAGGCTCTTTCG
TCTGCGTGGCTTGACGTAGATGTGCGCGACCACAAAAACGAGACCCCCCT
GTTCGACGCGGTCGAGAACGGCCAGTTACCTGCCACCAAGACTTTGATAG
CGCTGGGGGCGGACGTCAACATCAGCGACGCCACCGACGACCGCACCGTC
CTTCACTTGGCCGTAATCGGCGGCCACCTGCCAATGGTGAGGTGTCTCAT
CAACGCCGGCGCGGGCATCGACGCGCTAGACGACTGCGGCGCTACGCCGC
TTATGTTGGCGGCCACGGAGGGGCAGCTGTCTGTCGTAAAAGCTCTACTT
TCCGCCGGCGCT
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