mRNA_Ecto-sp13_S_contig7215.18340.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7215.18340.1
Unique NamemRNA_Ecto-sp13_S_contig7215.18340.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7215.18340.1 vs. uniprot
Match: A0A6H5KPC9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC9_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 8.070e-42
Identity = 93/190 (48.95%), Postives = 114/190 (60.00%), Query Frame = 2 
Query:    2 RLMNLKERDNGGTSLAATVANEIGTIKVVWRDWVKVGKEFSDNYQMHPTISSYKHANKRDAWDPPGIVADGHGGRGYGEYHALMRQAGKVIKIDETRSCLVDKYRYEGEPWSATLLYRTKDKIQELGVISVFESPEEVAERKRKRIARRNKRRNLLEDAAARGPFVPPPVPVSLVDEPSLVATEGGESHG 571
            R   L+E++ GG SL   VA+E+GTIKVVWRD   VGK+F+DNY+ +   SSYK ANK DA    G            E  A   +AGKVI ++E RSC+V++YRYEGEPWSATLLYRTKD ++++GVI    SPEEVAER+R R+                       VPVSLVD P  VA E GE  G
Sbjct:  121 RYTTLREKEIGGKSLPDAVASELGTIKVVWRDCALVGKDFADNYRTYEAASSYKQANKTDAKRTGGAGXXXX----XXEKFASTTRAGKVIGMNEARSCVVNRYRYEGEPWSATLLYRTKDYLEKVGVIPKDMSPEEVAERRRMRLXXXXXXXXXXXXXXXXXXXXXX-VPVSLVDGPPPVAAEEGEDEG 305
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BLAST of mRNA_Ecto-sp13_S_contig7215.18340.1 vs. uniprot
Match: D8LLM6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM6_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 1.260e-36
Identity = 75/141 (53.19%), Postives = 96/141 (68.09%), Query Frame = 2 
Query:    2 RLMNLKERDNGGTSLAATVANEIGTIKVVWRDWVKVGKEFSDNYQMHPTISSYKHANKRDAWDPPGIVADGHGGRGYGEYHALMRQAGKVIKIDETRSCLVDKYRYEGEPWSATLLYRTKDKIQELGVISVFESPEEVAER 424
            R   L+E++ GG SL   VA+E+GTIKVVWRD   VGK+F+DNY+ +   SSYK ANK DA    G            E  A   +AGKVI ++E RSC+V++Y+YEGEPWSATLLYRTKD ++++GVI    SP+EVAER
Sbjct:  119 RYTTLREKEIGGQSLPDAVASELGTIKVVWRDCALVGKDFADNYRTYAAASSYKQANKTDAKRTGGAGXXXX----XXEKFASTTRAGKVIGMNEARSCVVNRYQYEGEPWSATLLYRTKDYLEKIGVIPKDTSPQEVAER 255
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BLAST of mRNA_Ecto-sp13_S_contig7215.18340.1 vs. uniprot
Match: D8LLM5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM5_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.560e-24
Identity = 70/185 (37.84%), Postives = 101/185 (54.59%), Query Frame = 2 
Query:    2 RLMNLKER--DNGGTSLAATVANEIGTIKVVWRDWVKVGKEFSDNYQMHPTISSYKHANKRDAWDPPGIVADGHGGRGYGEYHALMRQAGKVIKIDETRSCLVDKYRYEGEPWSATLLYRTKDKIQELGVISVFESPEEVAERKRKRIARRNKRRNLLEDAAARGPFVPPPVPVSLVDEPSLVAT 550
            R   LKE+  ++GG +L  +  +EIG +K+VW D VK G  FS ++Q + T +S+  ANK DA         G GG    +  A   +AGKV++++E RSC V ++   GEPW A LLYRT+  +Q++GV+   E+  + AERK KR                +G   PPPVPV   + P  VA+
Sbjct:  121 RFTTLKEKQGNSGGRALKESGTSEIGAVKIVWNDCVKTGTGFSSHFQEYST-TSFTQANKSDAK----ATGAGAGGGSSEKAFASTTRAGKVLRLNEARSCTVTRFDTVGEPWEARLLYRTEHHLQDIGVLGTNETAAQEAERKAKRAX-------XXXXXXLQGGPSPPPVPVMEDNSPPPVAS 293
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BLAST of mRNA_Ecto-sp13_S_contig7215.18340.1 vs. uniprot
Match: D8LLM2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM2_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 3.090e-21
Identity = 58/147 (39.46%), Postives = 85/147 (57.82%), Query Frame = 2 
Query:    2 RLMNLKER--DNGGTSLAATVANEIGTIKVVWRDWVKVGKEFSDNYQMHPTISSYKHANKRDAWDPPGIVADGHGGRGYGEYHALMRQAGKVIKIDETRSCLVDKYRYEGEPWSATLLYRTKDKIQELGVISVFESPEEVAERKRKR 436
            R   LKE+  ++GG +L  +  +EIG +K+VW D VK GK  S  ++ + T +S+  ANK DA         G GG    +  A   +AGKVI+++E +SC V  Y   G+PW A LLYRT+  +Q++GV+   E+  +  ERK KR
Sbjct:  121 RFTTLKEQQGNSGGRALKKSRTSEIGVVKIVWNDCVKTGKRSSSRHRKYST-TSFTQANKSDAK----ATGAGAGGGSSEKAFASTTRAGKVIRLNEPKSCTVSTYHNVGKPWEARLLYRTEHHLQDIGVLGTSETAAQEIERKAKR 262
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BLAST of mRNA_Ecto-sp13_S_contig7215.18340.1 vs. uniprot
Match: D8LLM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLM7_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.120e-17
Identity = 46/103 (44.66%), Postives = 60/103 (58.25%), Query Frame = 2 
Query:   35 GTSLAATVANEIGTIKVVWRDWVKVGKEFSDNYQMHPTISSYKHANKRDAWDPPGI-------------------------VADGHGGRGYGEYHALMRQAGK 268
            G SL   +A EIGTIK+VWRD VKVGKEFSDN + + T+SSYK ANK DA    G                          VADGHGGR +GE+++ ++++G+
Sbjct:    3 GKSLPDAIAREIGTIKIVWRDCVKVGKEFSDNCREYATVSSYKQANKTDAVATGGAGTGAGEGMSFSSTTSCGNSSAAGRGVADGHGGRSFGEFNSSVQRSGR 105
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7215.18340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KPC9_9PHAE8.070e-4248.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLM6_ECTSI1.260e-3653.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLM5_ECTSI1.560e-2437.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLM2_ECTSI3.090e-2139.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLM7_ECTSI3.120e-1744.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7215contigEcto-sp13_S_contig7215:4942..7379 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score140.6
Seed ortholog evalue7.6e-31
Seed eggNOG ortholog2880.D8LLM6
Model size784
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2ERJ9@1,2SUBW@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_005170.1
Cds size567
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7215.18340.1prot_Ecto-sp13_S_contig7215.18340.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7215 4949..7169 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463988.4779196-UTR-Ecto-sp13_S_contig7215:4941..49481681463988.4779196-UTR-Ecto-sp13_S_contig7215:4941..4948Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7215 4942..4948 +
1681463988.5304759-UTR-Ecto-sp13_S_contig7215:7169..73791681463988.5304759-UTR-Ecto-sp13_S_contig7215:7169..7379Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7215 7170..7379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463988.491075-CDS-Ecto-sp13_S_contig7215:4948..50581681463988.491075-CDS-Ecto-sp13_S_contig7215:4948..5058Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7215 4949..5058 +
1681463988.503783-CDS-Ecto-sp13_S_contig7215:5943..60281681463988.503783-CDS-Ecto-sp13_S_contig7215:5943..6028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7215 5944..6028 +
1681463988.5129347-CDS-Ecto-sp13_S_contig7215:6441..64971681463988.5129347-CDS-Ecto-sp13_S_contig7215:6441..6497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7215 6442..6497 +
1681463988.5217462-CDS-Ecto-sp13_S_contig7215:6853..71691681463988.5217462-CDS-Ecto-sp13_S_contig7215:6853..7169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7215 6854..7169 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7215.18340.1

>prot_Ecto-sp13_S_contig7215.18340.1 ID=prot_Ecto-sp13_S_contig7215.18340.1|Name=mRNA_Ecto-sp13_S_contig7215.18340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
MNLKERDNGGTSLAATVANEIGTIKVVWRDWVKVGKEFSDNYQMHPTISS
YKHANKRDAWDPPGIVADGHGGRGYGEYHALMRQAGKVIKIDETRSCLVD
KYRYEGEPWSATLLYRTKDKIQELGVISVFESPEEVAERKRKRIARRNKR
RNLLEDAAARGPFVPPPVPVSLVDEPSLVATEGGESHG*
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mRNA from alignment at Ecto-sp13_S_contig7215:4942..7379+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7215.18340.1 ID=mRNA_Ecto-sp13_S_contig7215.18340.1|Name=mRNA_Ecto-sp13_S_contig7215.18340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7215:4942..7379+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTTGATGAACCTGAAGGAAAGGGACAATGGCGGAACGTCGCTGGCGG
CCACGGTAGCAAACGAAATCGGGACGATAAAGGTCGTGTGGCGCGACTGG
GTCAAGGTCGGGAAAGAGTGAGTAATTAAGTTTTTTGTAGTCTTGTCAAA
AGGTATTCCCCCGCCGTGTGCTCGCCTCCACAAGACACGTACGCGCGCAT
ACACCATGTCACGTGGGGCACACCCCCTGGCGAATCTAGCGGCGTTGGGT
TGACTTAGAATATTACAAGTTTACAACAGACTTGTATGGCTCTTCAAACA
GGCAGTTTGTGGAATTGAATCGACTGTGAGTTGTTGTGTTGTTAAAGGCA
GGGAAGTGAGACTCACCCCTCCCGTCCCCGGTGTATTATCAAAATCGAAA
AGACAGCAGGGGATGCAAAGGCCACTGCTGGTGGACCGATGGTAGTAGCC
AACCTAGCCTGGGGGAATGTTGTGCCTGCTGGTTCTCAAAATCGACCCTG
AGCCAGGTCTCCGTTTCCTTCAGTGCGAGGCATGCCCTACCAACAACAGT
AATAATACGGGGTCGAAAACGACAACTCTGGCTTGGTGCTGTCTCCGATT
GGCAACGATTCGAATTTGGTACAGAACCACCCACCGGCAACAAGACGAGG
GTAGGTTCGAAGGGTACGAAGCAAGAGCAGCGCAAATATGTGAAGCAGCA
ACAAAGACGCGAAAGTCCTAGCGCCGAGCAACGTTGGATCAACCATGCGC
GTGTTCGCGAGTGTGCTGCTTTCTCTTTCTCTGCGGTCTCCTCACGATCG
GGAAACGTGTAACACTTAGTGCACCTCTCCTTCTCACTATGTCTCCGCTG
TATCCCTGCTTGTCTGTGTCCGGGACGAGTTTATCGGTCGTGGGGTACAG
TAGGTTCACGCTACCTCTCTTTCTCTCTGTCTCTCTCTGTCTCTCTCTCT
GTCTGTCTGTCTCTCTCTATCTATTAATTTCTTTGTTTTTCGTCTCTCGC
AGGTTTTCGGATAACTACCAGATGCACCCAACGATTAGCTCCTACAAGCA
TGCCAACAAGAGGGACGCCTGGGACCCTCCAGGCATCGTGGCTCACGAGA
GGCGTTCCTCCTCCACAAGGCTAGTGACGAACCGAACATACGGAGGCTCT
CTTCCCCCGCTCTCCCCTGTGCTCTCCTGCACGCAGTCATGAAACGTGAT
AGTTATTGTTGTTGTTGCTGTTGTCTCCACATAAAAAACACGCCGGTCTA
TGCTTAGCACCTTGTAACATTAGGTTCATCTAACGCGGAAGCTTTCCGTC
GTCGTAAGTCAGACTAACCAAAAGAGTGTGGAAAAGTACACGGATCCACA
AAGAATATCCTAAACAAAGAACGACACCAAAAGATAAGGCCCCAGCCAGA
TATCGAGGGAGAATGCAGGGAGGGCTACGTGGGGCGTGGCAAAAAGCGGT
TTCATGCCTATGGTAACGGTCGCGGCAACCGCGGTGGCGCGCGACGTGAG
GTGGCGGACGGGCATGGTGGTCGTGGTTACGGGGAATACCACGCTCTTAT
GAGGCAGTCCGTCCGCTGTCGTGTCGACGAATTCTTCGTAAATGGCCGGG
TTGAAAACCACCAGAGGCTTACGGATTGTGCCTCAGTCACTCCCGGAATG
CTTCACAGGAGTGTGGTATCTCCCGTTACCACCACCACCATGCACGTCCG
CCACCTCACGTCCCGCGTCACCACCAATGCCGCGACCGAAACCTATTGGC
AAAGAAACCAACTTTCCACGCCCACGCTGTTACCCCTTGTTGCAAGCAGC
GTTAACTCTCACATCGAGACTTTTCTCCGTTTCGCACACACCCAGTACGG
CCTCCGAGCACATTTTTGTGTCCACTTATTTTTGTCCCTCCCTTTTCATG
CTCTGCATTCAGGGCAGGCAAGGTGATCAAGATCGACGAGACCAGGTCCT
GTCTCGTGGACAAGTACCGGTACGAAGGGGAGCCATGGTCAGCGACCCTT
CTGTACCGCACCAAAGACAAAATCCAGGAGTTGGGTGTAATATCAGTGTT
TGAAAGTCCGGAGGAAGTCGCTGAGCGGAAGAGGAAAAGAATCGCGCGGC
GCAACAAGAGGCGCAATCTGCTAGAAGATGCGGCGGCGCGAGGGCCCTTC
GTTCCCCCGCCTGTCCCGGTTTCTTTGGTGGACGAACCGTCTCTGGTAGC
CACCGAGGGAGGCGAGAGCCATGGCTGAAAAGCGGAAGCACGAGACAGAC
TGGAGGACGAGAGAGCTCGTTCACTTGGCTCGAGGCTGAACCGGGAACGA
TGAGTATGGAGCAGCGGCAGGAAGTGGATTCTACGGCACGCACCACGGGG
AAGAGCTTTGGGACCAGGACTGCTGAGCATCACTATGAGTAACAATTCGA
GAGTCTGGAAGATTGTGCTTGAAGCTGAATCCAAACCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7215:4942..7379+

>mRNA_Ecto-sp13_S_contig7215.18340.1 ID=mRNA_Ecto-sp13_S_contig7215.18340.1|Name=mRNA_Ecto-sp13_S_contig7215.18340.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7215:4942..7379+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACCTGAAGGAAAGGGACAATGGCGGAACGTCGCTGGCGGCCACGGT
AGCAAACGAAATCGGGACGATAAAGGTCGTGTGGCGCGACTGGGTCAAGG
TCGGGAAAGAGTTTTCGGATAACTACCAGATGCACCCAACGATTAGCTCC
TACAAGCATGCCAACAAGAGGGACGCCTGGGACCCTCCAGGCATCGTGGC
GGACGGGCATGGTGGTCGTGGTTACGGGGAATACCACGCTCTTATGAGGC
AGGCAGGCAAGGTGATCAAGATCGACGAGACCAGGTCCTGTCTCGTGGAC
AAGTACCGGTACGAAGGGGAGCCATGGTCAGCGACCCTTCTGTACCGCAC
CAAAGACAAAATCCAGGAGTTGGGTGTAATATCAGTGTTTGAAAGTCCGG
AGGAAGTCGCTGAGCGGAAGAGGAAAAGAATCGCGCGGCGCAACAAGAGG
CGCAATCTGCTAGAAGATGCGGCGGCGCGAGGGCCCTTCGTTCCCCCGCC
TGTCCCGGTTTCTTTGGTGGACGAACCGTCTCTGGTAGCCACCGAGGGAG
GCGAGAGCCATGGCTGA
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