mRNA_Ecto-sp13_S_contig7214.18339.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7214.18339.1
Unique NamemRNA_Ecto-sp13_S_contig7214.18339.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7214.18339.1 vs. uniprot
Match: A0A6H5KJB8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB8_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 3.910e-51
Identity = 140/187 (74.87%), Postives = 150/187 (80.21%), Query Frame = -2 
Query:    4 QQHGFRSQSTNARSAAARAGSKAFVVVDGAEGTEADVAWSEER-----LGEAGAAAASTMADGAGLDGNGGEWSTTAGGGXXXXXXXAGRVEISXXXXXXXXXXXXXXXXXXXXXXXXNTDVGFMDGGFADHDSFYAGGGGLQSSSLQAXXXXXXXXAAGGLSSFDTDGIDLAVGYADTASAIDSRS 549
            QQHGFRS+STNARS AARAGS+AFVVVDG EG +ADVA SEER     +GEAGA+AAST ADGAGLDGN  + STTAG G         RVEIS   XXXXXXXXXXXXXXXXXXXXX  DVGF+DGGFAD+ S+YAGGGGLQSSSLQA        AAGGLSSFDTDGIDLAVGYADTA+AIDSRS
Sbjct:  137 QQHGFRSRSTNARSPAARAGSEAFVVVDGGEGMKADVARSEERHTNLPVGEAGASAASTTADGAGLDGNEADGSTTAGVGAASNSGGMVRVEISDGSXXXXXXXXXXXXXXXXXXXXXXXDVGFIDGGFADNGSYYAGGGGLQSSSLQAHAHAAAAVAAGGLSSFDTDGIDLAVGYADTAAAIDSRS 323
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BLAST of mRNA_Ecto-sp13_S_contig7214.18339.1 vs. uniprot
Match: D7G7K0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K0_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 6.270e-9
Identity = 40/51 (78.43%), Postives = 41/51 (80.39%), Query Frame = -2 
Query:    4 AGGGGLQSSSLQAXXXXXXXXAAGGLSSFDTDGIDLAVGYADTASAIDSRS 156
            A GGGLQSSSLQA        AA GLSSFDTDGIDLAVGYADTA+AIDSRS
Sbjct: 2720 ARGGGLQSSSLQAHAHAA---AAAGLSSFDTDGIDLAVGYADTAAAIDSRS 2767
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7214.18339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KJB8_9PHAE3.910e-5174.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7K0_ECTSI6.270e-978.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7214contigEcto-sp13_S_contig7214:7099..7657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size559
Hectar predicted targeting categoryother localisation
Exons1
Cds size369
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463988.2787383-UTR-Ecto-sp13_S_contig7214:7098..72881681463988.2787383-UTR-Ecto-sp13_S_contig7214:7098..7288Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7214 7099..7288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463988.2898827-CDS-Ecto-sp13_S_contig7214:7288..76571681463988.2898827-CDS-Ecto-sp13_S_contig7214:7288..7657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7214 7289..7657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7214.18339.1prot_Ecto-sp13_S_contig7214.18339.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7214 7289..7657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7214.18339.1

>prot_Ecto-sp13_S_contig7214.18339.1 ID=prot_Ecto-sp13_S_contig7214.18339.1|Name=mRNA_Ecto-sp13_S_contig7214.18339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=123bp
MKPTSVLSPSSSSSSQSLTSTSLSPPLLELSLISTRPAPPESEAAPPPAV
VDHSPPFPSKPAPSAIVEAAAAPASPSRSSDQATSASVPSAPSTTTKALD
PARAAADLALVDWERKPCCCCSC
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mRNA from alignment at Ecto-sp13_S_contig7214:7099..7657+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7214.18339.1 ID=mRNA_Ecto-sp13_S_contig7214.18339.1|Name=mRNA_Ecto-sp13_S_contig7214.18339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=559bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7214:7099..7657+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCTGCGACTGTCGATCGCCGAAGCGGTGTCGGCGTAGCCAACGGCGA
GGTCGATCCCGTCGGTGTCAAAGGAGGACAACCCGCCGGCGGCGGCGTGT
GCGTGTGCGTGTGCGTGGGCCTGGAGCGATGAAGACTGCAGTCCGCCGCC
TCCTGCGTAGAAGGAATCGTGGTCGGCGAAGCCGCCGTCCATGAAACCGA
CGTCGGTGTTGTCGCCATCGTCGTCGTCGTCATCGCAGTCGCTGACATCG
ACCTCGCTATCGCCACCGCTGCTCGAACTGTCGCTGATCTCGACACGCCC
CGCTCCGCCAGAGTCGGAAGCAGCACCACCGCCGGCGGTCGTCGACCATT
CACCTCCGTTTCCATCTAAACCAGCACCATCCGCCATCGTCGAAGCAGCG
GCAGCGCCGGCCTCGCCCAGTCGCTCTTCCGACCAAGCAACATCCGCTTC
CGTACCTTCAGCCCCATCGACAACGACGAAGGCTTTAGACCCCGCCCGCG
CCGCAGCCGATCTAGCGTTAGTTGACTGGGAGCGGAAACCGTGCTGCTGC
TGCTCCTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7214:7099..7657+

>mRNA_Ecto-sp13_S_contig7214.18339.1 ID=mRNA_Ecto-sp13_S_contig7214.18339.1|Name=mRNA_Ecto-sp13_S_contig7214.18339.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=369bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7214:7099..7657+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAACCGACGTCGGTGTTGTCGCCATCGTCGTCGTCGTCATCGCAGTC
GCTGACATCGACCTCGCTATCGCCACCGCTGCTCGAACTGTCGCTGATCT
CGACACGCCCCGCTCCGCCAGAGTCGGAAGCAGCACCACCGCCGGCGGTC
GTCGACCATTCACCTCCGTTTCCATCTAAACCAGCACCATCCGCCATCGT
CGAAGCAGCGGCAGCGCCGGCCTCGCCCAGTCGCTCTTCCGACCAAGCAA
CATCCGCTTCCGTACCTTCAGCCCCATCGACAACGACGAAGGCTTTAGAC
CCCGCCCGCGCCGCAGCCGATCTAGCGTTAGTTGACTGGGAGCGGAAACC
GTGCTGCTGCTGCTCCTGC
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