mRNA_Ecto-sp13_S_contig7210.18335.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7210.18335.1
Unique NamemRNA_Ecto-sp13_S_contig7210.18335.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7210.18335.1 vs. uniprot
Match: D7FHY1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHY1_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 2.670e-26
Identity = 93/253 (36.76%), Postives = 102/253 (40.32%), Query Frame = 3 
Query:  180 DRLAATQEGQGAKGEVEEGKEAGRRMYSVGSIAGGMSTSHAL*SAA*DGPASSMIGRLAATATDQIYDCTRGRFLKLAVAWTAAREQRLSGDPGLCSLL----------ERVTKYVVLGERPRELCDLVL*DLPHANARCVSPTYRGCLLLLVVVVVVRWCRVSWLPSLLIMPVRARLA*FLRQCKTMVCFVKCRNF*MAGCQDFLSDKVDLMLYLMVLPSRRELAVAKGVLQFTRKTSPRDANALLAALSSR 908
            DR  A QEGQG  GEVEEGKEAGR MYSVG +                                      +GRFLKLAVAWTAAR QRLSGDPGLC LL          ER T+Y+VLGERP+ELCDL+L D+  ANAR                                                                                    ELAVAKGVLQF  K S RDANALLAA  ++
Sbjct:  118 DRRTAAQEGQGGVGEVEEGKEAGRGMYSVGVL--------------------------------------QGRFLKLAVAWTAARGQRLSGDPGLCGLLGRCLWNEGDLERGTRYLVLGERPQELCDLILQDVSDANAR------------------------------------------------------------------------------------ELAVAKGVLQFASKASLRDANALLAAYKTQ 248
[Close]
BLAST of mRNA_Ecto-sp13_S_contig7210.18335.1 vs. uniprot
Match: D7G1P9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1P9_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 9.980e-15
Identity = 66/189 (34.92%), Postives = 74/189 (39.15%), Query Frame = 3 
Query:  387 TRGRFLKLAVAWTAAREQRLSGDPGLCSL----------LERVTKYVVLGERPRELCDLVL*DLPHANARCVSPTYRGCLLLLVVVVVVRWCRVSWLPSLLIMPVRARLA*FLRQCKTMVCFVKCRNF*MAGCQDFLSDKVDLMLYLMVLPSRRELAVAKGVLQFTRKTSPRDANALLAALSSR*PARN 923
            ++GRFLKLAVAWT AR QRL  D GLC L          LER T+Y VLGERP+ELCDL+L D+  ANAR                                                                                    +LAV KGVLQF RK S RDANALLAA   R   +N
Sbjct:    9 SQGRFLKLAVAWTTARGQRLRDDSGLCGLVGRCLWNEGELERGTRYHVLGERPQELCDLILQDVSDANAR------------------------------------------------------------------------------------KLAVGKGVLQFARKRSLRDANALLAANKMRAEIKN 113
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7210.18335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHY1_ECTSI2.670e-2636.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G1P9_ECTSI9.980e-1534.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7210contigEcto-sp13_S_contig7210:3486..7612 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1039
Hectar predicted targeting categoryother localisation
Exons6
Cds size435
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7210.18335.1prot_Ecto-sp13_S_contig7210.18335.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7210 3616..4940 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463988.0998156-UTR-Ecto-sp13_S_contig7210:3485..36151681463988.0998156-UTR-Ecto-sp13_S_contig7210:3485..3615Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7210 3486..3615 +
1681463988.1419494-UTR-Ecto-sp13_S_contig7210:5192..52861681463988.1419494-UTR-Ecto-sp13_S_contig7210:5192..5286Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7210 5193..5286 +
1681463988.1527-UTR-Ecto-sp13_S_contig7210:6483..66181681463988.1527-UTR-Ecto-sp13_S_contig7210:6483..6618Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7210 6484..6618 +
1681463988.1631796-UTR-Ecto-sp13_S_contig7210:7367..76121681463988.1631796-UTR-Ecto-sp13_S_contig7210:7367..7612Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7210 7368..7612 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463988.110032-CDS-Ecto-sp13_S_contig7210:3615..37641681463988.110032-CDS-Ecto-sp13_S_contig7210:3615..3764Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7210 3616..3764 +
1681463988.1199698-CDS-Ecto-sp13_S_contig7210:3905..39891681463988.1199698-CDS-Ecto-sp13_S_contig7210:3905..3989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7210 3906..3989 +
1681463988.12975-CDS-Ecto-sp13_S_contig7210:4738..49401681463988.12975-CDS-Ecto-sp13_S_contig7210:4738..4940Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7210 4739..4940 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7210.18335.1

>prot_Ecto-sp13_S_contig7210.18335.1 ID=prot_Ecto-sp13_S_contig7210.18335.1|Name=mRNA_Ecto-sp13_S_contig7210.18335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MRMRSELAAVLFIAEARQTRSDTGRAGSEGGGGRRQGSRTKDVLCWEYCR
WHEHISCSLICSVRWAGEQYDREVGRHSNRPNLRLYSGTIPQARGSLDGR
TRATLERRSRAVQSAGACHKICGAGGASTRALRPGPVGPASCER*
back to top

mRNA from alignment at Ecto-sp13_S_contig7210:3486..7612+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7210.18335.1 ID=mRNA_Ecto-sp13_S_contig7210.18335.1|Name=mRNA_Ecto-sp13_S_contig7210.18335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4127bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7210:3486..7612+ (Ectocarpus species13 EcNAP12_S_4_19m)
TAACGACAACGCGGCGCTCACCATCGCTGAGCAAGGGATAGGGGTGCTAC
AGTACTGGCTCGTGGCTTCGCAGACTTGGTAAAGGAGGGGCAACGTACTG
GTGGGTATCCTCAATGATCATGAATTGAACATGAGGATGCGAAGCGAGCT
AGCAGCGGTTCTCTTCATAGCTGAGGCCCGACAGACTCGCAGCGACACAG
GAAGGGCAGGGAGCGAAGGGGGAGGTGGAAGAAGGCAAGGAAGCCGGACG
AAGGATGTACTCTGTTGGGAGTATTGCAGGTTTGTGTGAGTGTGATGAGT
TGTAAATTGCACTATTTACTACTTCGTATGTATCGATTGGAGTGCCTGTT
GGTTGGTCTAACTGCAATTTTCAGCGTAATGTCGGCCGACACCTCTCCGG
TTGCCTTCTGTCGGAAGCAGGTGGCATGAGCACATCTCATGCTCTTTGAT
CTGCAGCGTGAGATGGGCCGGCGAGCAGTATGATCGGGAGGTTGGCCGCC
ACAGGTGATGGGAAATACTCAACTCCATGTGGATGCTTGGTTTTCAGCGC
CCGAAGATCTGCAGATGGTTTTTGAAGTCTCTGTTCCCCCTACCTTACAG
GTGCCAGAATGTTTGGGAAGATAAGGTCGCACGGGACCGATGTTTAGTCG
TGGTGCTCATGGTTGAAGCCCGTTGGAGCTCCGACCAGCGTTGCGTCCCT
GTGTCCCGCATGATGACATAGTTTCGACGGTCGATAAAATCGGGTGAACA
TGCAATTGGCGATGCGCGCGTTGCAGTTTCTCAACGTATTGCGTGGCGTG
CTTGACCGTACAAAAACCAAACTTTTGCTGCCGGTGGCTACACGACTGAC
GGCATGCCCTGTACAACAGCAGTGCTTCAGCAGTAGACCTCTCCGACGCT
TCGGTACCTGAAGGTACCTCACCCCCCTACACAACTGTTTCGTCCCACTT
AGAGATGTTTTTTTTAACGCCCACAGAATACTTATTGGACAAGCGACAGA
GTGACACTCATTCGAGGTACGGCGTTCACCATCCCGATGATACGTGTTTT
ATCCCCAACACTTGTCACCGGCGGGGCACATACCGCCGCCCGCCGTCGAA
TAACGTTTGCAGTCTACTGTACGTGCACAGCATGAGTGCTTTCCCTGGGA
GCCGGGCGCACGCGTACTGGTCGCGCGTCCGCTCCATACCTCAAACCAAC
CCTCCTCGTGTATGTTCCTACTTCTACCGTCTACCATCTTTCCAACCGAG
CAGCAACCGACCAAATTTACGACTGTACTCGGGGACGATTCCTCAAGCTC
GCGGTAGCCTGGACGGCCGCACGCGAGCAACGCTTGAGCGGCGATCCCGG
GCTGTGCAGTCTGCTGGAGCGTGTCACAAAATATGTGGTGCTGGGGGAGC
GTCCACGAGAGCTCTGCGACCTGGTCCTGTAGGACCTGCCTCATGCGAAC
GCTAGGTGTGTGTCACCTACTTATAGAGGCTGCTTGTTGTTGCTGGTTGT
GGTGGTGGTGGTACGTTGGTGTCGTGTGTCATGGTTGCCATCCCTTTTGA
TTATGCCGGTGCGAGCGCGTCTTGCATGATTCCTGCGGCAATGCAAGACA
ATGGTCTGTTTTGTCAAGTGTCGGAACTTTTGAATGGCGGGCTGTCAAGA
CTTTCTGAGCGATAAAGTTGATCTCATGTTGTATCTGATGGTACTTCCTT
CGCGCAGAGAGTTGGCGGTCGCTAAAGGGGTTCTGCAGTTCACGAGGAAG
ACGAGCCCGAGGGATGCGAACGCGCTATTGGCGGCATTGTCTTCGAGGTG
AGATAAAGCCATAACGAGAGCGACCGGATCAGTAGTGGCGGCAGCAGCAA
CAGCATGGGCTGGGGTGGGCGTTCGTGTCCACGATTGAGAAAAAGAGCGG
CCTTGGTGAGAACTCGGATGGCCGCTGGACATGAGAAGGGGCGGTCAACA
AGAAGGGGGGAGTGCTTGTCCTCCCTCGTTTCTCGTGTTTCCGTGGGTGA
TTGTAGTCTTCGTCTCTGGCTTGTGGTTGTATAGTACATGGCACACTCCG
TTTTCTTTATTTGGAGCATGGTGCCGCTTTCTCAGGGGATCGCTCCGAGT
GGAGTGGTAGGGCTGACCACCGTGTTGCGTGCAACCCCCATTTGAAACCG
ACCCTTGCTCCCAAGCAGTTGCAGTACAGGTTAATGCGAGCATGTGCGGA
TAACACTGACTGGGCCCGTGTGCACGTCGTTGGTCGCGAAAGGGAAGGGA
GGGGCCCATGATCGTATGGACGAAAATGAAGTGAAATAGTACTGGGGGCC
ACATCGAGGGAGGGAGCCATCGGCCCGGGGCTGGGCTCCAATTTGCCACA
TCAAGCCAACACGAACGTGCTAAATAATATTGGTTCATTCCAGAAACGGG
TGCCGGGTGTGGATGCCTCGACCAGGGTGTTTTTCCCTCTGGGGAATGAG
GTTATCTCTTTGCTGGTCAAATGTGTTGCTGTTCTCCGGCATCGCTCTGT
CTCGTTTGATCGTTTACTTTCTGCCTCGCCCAATTGTCGAACTTGACCAA
AGCCAACTCAAAATCCCAATTACCAGGAACTCCAATTGAGAAAACATTTC
AAGACGGTACGGTTGGAGCTAGAGGATGCCGCAGCGAAGACACGAGAGCG
GGCCGCCTGCAGGCAGACGGAGATGAGGGGAGGGATGGCATGCAGAAGAT
GATCGAGGAGAGGAAGGCGCGTTTCTAGGAGTTCGACAAGTCACGGGGTG
AGAGCAGAGAGAGAGAGAGAGGTACACGCGTGTCGTTGTTGTCATGTTAG
TGGTGCCGTTGTTTGGGGTACAAATGGTAATGGTGTTGGCAGGGTGCTGG
TGGGATGTTTGGACCCCATTTCTCAAAGGGCAACAACTAGTACCTGTGAG
TTTTGGATATCTTGTACATAACTTTTTATCTCTAGTACCTAAATTGAGGT
ACACCGTCCCCTGCTTGCTTCCAATTGCTTTTTGTAAAATGCGGCTACCC
AGCGCGGAATTTGCTCACGAGTGATGAACAGTGATGAACAAGCGTCATTC
GCTGACCGCCTGCTTTGGCTCTCTCCTCCTCCTCATCATCGTCATCGCCT
TTTGCCTGTTGACGGCGTCGACTGTGACTGGAGGTTAATCGTTTTTTTGT
CGGTGGTTGCGTCGCGCTTCTTTTGTTATTTTTGCATGTACACTGCTTTC
GGTCTGACAGGCCTGTCAAAATGTTCGGAGATCAAGGAATATCACCCCGA
GCTTGTGGTCGGGGGCTTCACGCTCGCAGTGGCCCTGCCCTCGGCACTCG
GCGAGCAAGCTGTCTCAGGCACCTGCGAGTACCTACCTGCCTTGCTGTGG
TCATATAGCGACGGCACCCTTTGTTGAGGGGGCAGGCCGTTTGCTTTTCA
GCGTGGTGTCAATGACGGATTTCATCACCGCATGGTAGACATTAAACCGT
TTTCGAGCTCGTGATGAAGGACGATGCGCTTGCTTGTGGTGGCTCTGCCT
TCGCGCGGAGTGGGTAGCTAAGCGGTCTCAGGGGTTAGCCCGCCACTGCT
TTTGCTTTATTGGGGAATGTTGTCATTTTTTGCGGCGCTTCTCGAACGGA
AGAAAACTCAATACTTTCCTCCGCCGCGCCGGGCGTTGGGTGCGCTTCTG
GTCACCACTGCTACTACGTGGGCCAGAATACGAAATGTGTGAGGGACATT
TCTTTGACCGTATGTAGACAACAGCCTCGCCTCCTCCGTTTGTTTCTTTG
GAAAGTAAAAAAGAGTTTTTCATACCGTTCCTCATGAGCGTGCTTGTGTG
GGTGGCTGCCTCTGCCACACAGCAGTAACCGAGAATTAAAACGAACGATG
CTCTTTCTCTCATTTCGTCAATTGTTATCCAGCCGGACGGTGGACGTTCT
GCAGGAACGGCGCGAGAGCTTTGGTGCTATCACCACTGCCGTACGTGGTG
TACGGGGGGGCATCGATGAAGCGGCGAGGCGCCGCGACCGCAGTGATGTG
CTGACCGAGTAATTCACACAGCGCACGGACATGTCTACTGCAAGTCGGAG
GGAGGGAGGGGATGGTGCGTTTGCAGAGGGGGGCGTCGAGGACTCTATGG
CCTTCTGTCTCTCGAGAAGAGGTCGTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7210:3486..7612+

>mRNA_Ecto-sp13_S_contig7210.18335.1 ID=mRNA_Ecto-sp13_S_contig7210.18335.1|Name=mRNA_Ecto-sp13_S_contig7210.18335.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7210:3486..7612+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGATGCGAAGCGAGCTAGCAGCGGTTCTCTTCATAGCTGAGGCCCG
ACAGACTCGCAGCGACACAGGAAGGGCAGGGAGCGAAGGGGGAGGTGGAA
GAAGGCAAGGAAGCCGGACGAAGGATGTACTCTGTTGGGAGTATTGCAGG
TGGCATGAGCACATCTCATGCTCTTTGATCTGCAGCGTGAGATGGGCCGG
CGAGCAGTATGATCGGGAGGTTGGCCGCCACAGCAACCGACCAAATTTAC
GACTGTACTCGGGGACGATTCCTCAAGCTCGCGGTAGCCTGGACGGCCGC
ACGCGAGCAACGCTTGAGCGGCGATCCCGGGCTGTGCAGTCTGCTGGAGC
GTGTCACAAAATATGTGGTGCTGGGGGAGCGTCCACGAGAGCTCTGCGAC
CTGGTCCTGTAGGACCTGCCTCATGCGAACGCTAG
back to top