mRNA_Ecto-sp13_S_contig72055.18327.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig72055.18327.1
Unique NamemRNA_Ecto-sp13_S_contig72055.18327.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig72055.18327.1 vs. uniprot
Match: D7FN02_ECTSI (5\'-AMP-activated protein kinase subunit gamma-1 (AMPK gamma-1 chain) (AMPKg) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN02_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 2.380e-23
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 QFLVTTFREQQRLFDDPIAELRIGIFSDNVVTVQEHACLSEVLDLLELHRECACPPDEKRGAII 192
            +FLVT FREQQRLFDDPIAELRIGIFSD+VVTVQEHACLSEVLDLLELHR  A P  +  G ++
Sbjct:  191 EFLVTMFREQQRLFDDPIAELRIGIFSDSVVTVQEHACLSEVLDLLELHRIGAVPIVDADGRVV 254
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BLAST of mRNA_Ecto-sp13_S_contig72055.18327.1 vs. uniprot
Match: A0A836CIU9_9STRA (5'-AMP-activated protein kinase subunit gamma-1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIU9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 6.540e-18
Identity = 44/65 (67.69%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 QFLVTTFREQQRLFDDPIAELRIGIFSDNVVTVQEHACLSEVLDLLELHRECACPPDEKRGAIIS 195
            +FLV TFREQ+RLFDDPI EL IG+F DNVVTVQ+HA LSEVLDLLELHR  A P  +  G +++
Sbjct:  153 EFLVNTFREQRRLFDDPIGELPIGVF-DNVVTVQQHARLSEVLDLLELHRIGAVPIVDAAGRVVN 216
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BLAST of mRNA_Ecto-sp13_S_contig72055.18327.1 vs. uniprot
Match: A0A7S2SVN1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVN1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 7.580e-8
Identity = 28/64 (43.75%), Postives = 43/64 (67.19%), Query Frame = 1 
Query:    1 QFLVTTFREQQRLFDDPIAELRIGIFSDNVVTVQEHACLSEVLDLLELHRECACPPDEKRGAII 192
            ++LV  FREQ+RLF+D IA+L IG F + V+TV++ A LS+VLD +E     A P  ++   ++
Sbjct:  177 RYLVDNFREQRRLFEDSIADLGIGTFGEEVLTVRKTAVLSDVLDAMEARDVSAVPVVDESDRVV 240
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BLAST of mRNA_Ecto-sp13_S_contig72055.18327.1 vs. uniprot
Match: K3WPE9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPE9_GLOUD)

HSP 1 Score: 56.6 bits (135), Expect = 1.090e-7
Identity = 32/70 (45.71%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 QFLVTTFREQQRLFDDPIAELRIGIFSDNVVTVQEHACLSEVLDLLELHRECACPPDEKRGAIIS-HCLS 207
            +FLV+TFREQ+RLFD PI +L IG++SD ++TV E   L  VL  L   R  A P  +  G +++ +C+S
Sbjct:  257 EFLVSTFREQRRLFDQPIFDLGIGVYSD-LITVPEDMQLIRVLHTLVERRVSALPIVDSSGMVVNIYCVS 325
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BLAST of mRNA_Ecto-sp13_S_contig72055.18327.1 vs. uniprot
Match: A0A8K1FJ34_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJ34_PYTOL)

HSP 1 Score: 55.8 bits (133), Expect = 2.040e-7
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:    1 QFLVTTFREQQRLFDDPIAELRIGIFSDNVVTVQEHACLSEVLDLLELHRECACPPDEKRGAIIS-HCLS 207
            +FLV+TFREQ+RLFD PI +L IG+++ N++TV E   L  VL  L   R  A P  +  G +++ +C+S
Sbjct:  255 EFLVSTFREQRRLFDQPIFDLGIGVYA-NLITVPEEMPLIRVLHTLIERRVSAVPIVDSSGVVVNIYCVS 323
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BLAST of mRNA_Ecto-sp13_S_contig72055.18327.1 vs. uniprot
Match: A0A7R9WWZ1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WWZ1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.760e-7
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 QFLVTTFREQQRLFDDPIAELRIGIFSDNVVTVQEHACLSEVLDLLELHRECACP 165
            + LVT FRE +RLFDD I +LRIG + DN+VTV     L++ L+L+ LH   A P
Sbjct:  212 EHLVTHFRENRRLFDDSIYDLRIGTYHDNLVTVGPTQTLAQALELMRLHNLGALP 266
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BLAST of mRNA_Ecto-sp13_S_contig72055.18327.1 vs. uniprot
Match: B7FUD1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FUD1_PHATC)

HSP 1 Score: 55.1 bits (131), Expect = 3.700e-7
Identity = 26/55 (47.27%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 QFLVTTFREQQRLFDDPIAELRIGIFSDNVVTVQEHACLSEVLDLLELHRECACP 165
            + LVT FREQ+RLFDD I +L+IG + D++V+V  +  LS+ L L++ H+  A P
Sbjct:  178 EHLVTHFREQRRLFDDSIVDLKIGTYGDSLVSVTPNQTLSDALGLMKKHKLSALP 232
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BLAST of mRNA_Ecto-sp13_S_contig72055.18327.1 vs. uniprot
Match: A0A8J2WX77_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WX77_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.110e-6
Identity = 30/65 (46.15%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:    1 QFLVTTFREQQRLFDDPIAELRIGIFSDNVVTVQEHACLSEVLDLLELHRECACPPDEKRGAIIS 195
            ++ V TFRE++RLFD PI EL IG F D V+TV     L +VL LL      + P  +K G I+S
Sbjct:   30 EYFVATFREERRLFDQPIQELGIGTF-DEVMTVNTTTSLEDVLKLLCRRNLSSVPVVDKSGRIVS 93
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BLAST of mRNA_Ecto-sp13_S_contig72055.18327.1 vs. uniprot
Match: A0A2D4CEL8_PYTIN (5'-AMP-activated protein kinase subunit gamma, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CEL8_PYTIN)

HSP 1 Score: 53.5 bits (127), Expect = 1.340e-6
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    1 QFLVTTFREQQRLFDDPIAELRIGIFSDNVVTVQEHACLSEVLDLLELHRECACPPDEKRGAIIS-HCLS 207
            +FLV+TFREQ+RLFD PI +L IG+++ N++TV     L  VL  L   R  A P  +  G +++ +C+S
Sbjct:  272 EFLVSTFREQRRLFDQPIFDLGIGVYT-NLITVPXDMPLIRVLHTLVERRVSAVPIVDSSGVVVNIYCVS 340
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BLAST of mRNA_Ecto-sp13_S_contig72055.18327.1 vs. uniprot
Match: A0A7S2XY98_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY98_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.750e-6
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    4 FLVTTFREQQRLFDDPIAELRIGIFSDNVVTVQEHACLSEVLDLLE 141
            +LV+TFREQQRLF+D +A L IG +  N+VTVQ  A L EVL +LE
Sbjct:  167 YLVSTFREQQRLFEDSVASLGIGTYQ-NLVTVQHSARLREVLSVLE 211
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig72055.18327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN02_ECTSI2.380e-2378.135\'-AMP-activated protein kinase subunit gamma-1 (... [more]
A0A836CIU9_9STRA6.540e-1867.695'-AMP-activated protein kinase subunit gamma-1 n=... [more]
A0A7S2SVN1_9STRA7.580e-843.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
K3WPE9_GLOUD1.090e-745.71Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8K1FJ34_PYTOL2.040e-744.29Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7R9WWZ1_9STRA2.760e-750.91Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
B7FUD1_PHATC3.700e-747.27Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A8J2WX77_9STRA1.110e-646.15Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2D4CEL8_PYTIN1.340e-642.865'-AMP-activated protein kinase subunit gamma, put... [more]
A0A7S2XY98_9STRA1.750e-660.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig72055contigEcto-sp13_S_contig72055:435..641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score99.8
Seed ortholog evalue5.4e-19
Seed eggNOG ortholog2880.D7FN02
Preferred nameSNF4
Model size207
KEGG koko:K07200
KEGG Pathwayko04068,ko04152,ko04211,ko04213,ko04371,ko04530,ko04710,ko04714,ko04910,ko04920,ko04921,ko04922,ko04931,ko04932,ko05410,map04068,map04152,map04211,map04213,map04371,map04530,map04710,map04714,map04910,map04920,map04921,map04922,map04931,map04932,map05410
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001302,GO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005641,GO:0005737,GO:0005829,GO:0005886,GO:0006109,GO:0006111,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007031,GO:0007154,GO:0007165,GO:0007568,GO:0007569,GO:0008047,GO:0008144,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010562,GO:0010604,GO:0010675,GO:0010676,GO:0010906,GO:0010907,GO:0012505,GO:0016020,GO:0016043,GO:0016208,GO:0016310,GO:0017076,GO:0019207,GO:0019209,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0023052,GO:0030234,GO:0030295,GO:0030554,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031588,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032147,GO:0032268,GO:0032270,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033674,GO:0035639,GO:0036094,GO:0036211,GO:0042325,GO:0042327,GO:0043085,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043255,GO:0043412,GO:0043539,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045722,GO:0045859,GO:0045860,GO:0045913,GO:0045937,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0051252,GO:0051338,GO:0051347,GO:0051716,GO:0060255,GO:0061695,GO:0062012,GO:0062013,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0071944,GO:0080090,GO:0097159,GO:0097367,GO:0098772,GO:1901265,GO:1901363,GO:1901564,GO:1902494,GO:1902911,GO:1903506,GO:1990234,GO:2000112,GO:2001141
Exons1
EggNOG free text desc.cellular response to glucose starvation
EggNOG OGsCOG0517@1,KOG1764@2759
Cds size207
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463987.1472921-CDS-Ecto-sp13_S_contig72055:434..6411681463987.1472921-CDS-Ecto-sp13_S_contig72055:434..641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig72055 435..641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig72055.18327.1prot_Ecto-sp13_S_contig72055.18327.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig72055 435..641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig72055.18327.1

>prot_Ecto-sp13_S_contig72055.18327.1 ID=prot_Ecto-sp13_S_contig72055.18327.1|Name=mRNA_Ecto-sp13_S_contig72055.18327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
QFLVTTFREQQRLFDDPIAELRIGIFSDNVVTVQEHACLSEVLDLLELHR
ECACPPDEKRGAIISHCLS
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mRNA from alignment at Ecto-sp13_S_contig72055:435..641-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig72055.18327.1 ID=mRNA_Ecto-sp13_S_contig72055.18327.1|Name=mRNA_Ecto-sp13_S_contig72055.18327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72055:435..641- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTCCTGGTGACAACGTTTCGGGAACAGCAACGTCTTTTCGACGATCC
TATTGCGGAGCTGCGGATAGGGATATTTTCTGACAACGTGGTGACCGTGC
AAGAGCACGCCTGCCTGTCTGAAGTTCTCGATCTCCTGGAGCTCCACCGT
GAGTGTGCCTGCCCCCCTGATGAGAAGCGCGGCGCTATTATTTCTCACTG
TTTAAGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig72055:435..641-

>mRNA_Ecto-sp13_S_contig72055.18327.1 ID=mRNA_Ecto-sp13_S_contig72055.18327.1|Name=mRNA_Ecto-sp13_S_contig72055.18327.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig72055:435..641- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTCCTGGTGACAACGTTTCGGGAACAGCAACGTCTTTTCGACGATCC
TATTGCGGAGCTGCGGATAGGGATATTTTCTGACAACGTGGTGACCGTGC
AAGAGCACGCCTGCCTGTCTGAAGTTCTCGATCTCCTGGAGCTCCACCGT
GAGTGTGCCTGCCCCCCTGATGAGAAGCGCGGCGCTATTATTTCTCACTG
TTTAAGT
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