mRNA_Ecto-sp13_S_contig71963.18313.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71963.18313.1
Unique NamemRNA_Ecto-sp13_S_contig71963.18313.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71963.18313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71963contigEcto-sp13_S_contig71963:65..667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size378
Hectar predicted targeting categoryother localisation
Exons3
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463985.763337-CDS-Ecto-sp13_S_contig71963:64..1811681463985.763337-CDS-Ecto-sp13_S_contig71963:64..181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71963 65..181 -
1681463985.7756815-CDS-Ecto-sp13_S_contig71963:292..4181681463985.7756815-CDS-Ecto-sp13_S_contig71963:292..418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71963 293..418 -
1681463985.785638-CDS-Ecto-sp13_S_contig71963:532..6641681463985.785638-CDS-Ecto-sp13_S_contig71963:532..664Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71963 533..664 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463985.7968373-UTR-Ecto-sp13_S_contig71963:664..6671681463985.7968373-UTR-Ecto-sp13_S_contig71963:664..667Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig71963 665..667 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71963.18313.1prot_Ecto-sp13_S_contig71963.18313.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71963 65..664 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71963.18313.1

>prot_Ecto-sp13_S_contig71963.18313.1 ID=prot_Ecto-sp13_S_contig71963.18313.1|Name=mRNA_Ecto-sp13_S_contig71963.18313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=125bp
MADLYQKQGFLDKASPLLEEVVSARERVQGRDHPDVASALNNRRGKYEEA
EPLYERSQAIREKALGPEHPAVATVLNNRAGLLRAQGKYEEAEPLYERSQ
AIRDKALGPEHPAVATVLNNRAGC*
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mRNA from alignment at Ecto-sp13_S_contig71963:65..667-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71963.18313.1 ID=mRNA_Ecto-sp13_S_contig71963.18313.1|Name=mRNA_Ecto-sp13_S_contig71963.18313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71963:65..667- (Ectocarpus species13 EcNAP12_S_4_19m)
TGGATGGCGGACTTGTACCAGAAGCAGGGTTTCCTGGACAAGGCTTCTCC
TCTGTTGGAGGAGGTTGTGAGCGCCCGTGAGCGTGTTCAAGGACGTGACC
ATCCGGATGTCGCTTCAGCGCTCAACAACCGGCGGGTTGTGAGAGCCAGA
CAACGCTTCTAGATGGTTCTAGAAAATAATGTTCATCCGCAGTTCTAGAT
CCCACTTGCACCAAAACGCGACCCTGTCACGCCGTCGAATATGCTTCAGG
GGAAGTATGAGGAAGCCGAGCCACTGTATGAGCGGTCACAAGCCATACGA
GAGAAGGCCTTGGGTCCGGAACATCCTGCCGTCGCAACTGTGCTCAACAA
CCGGGCGGGGTTGTTGAGAGCGCAGGTGAGAGCCAAACCACGCTTCTAGA
TCGTTCTAGAAGAATATGTTCATCCGCAGTTCTAGAACCCACTTGCACCA
AAACGCGACCCTGTCACGCTGTCGAATATGCTTCAGGGGAAGTATGAGGA
AGCCGAGCCACTTTATGAGCGGTCACAAGCCATACGAGACAAGGCCCTGG
GTCCGGAACATCCTGCCGTCGCAACTGTGCTCAACAACCGGGCGGGTTGT
TGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71963:65..667-

>mRNA_Ecto-sp13_S_contig71963.18313.1 ID=mRNA_Ecto-sp13_S_contig71963.18313.1|Name=mRNA_Ecto-sp13_S_contig71963.18313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=375bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71963:65..667- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGACTTGTACCAGAAGCAGGGTTTCCTGGACAAGGCTTCTCCTCT
GTTGGAGGAGGTTGTGAGCGCCCGTGAGCGTGTTCAAGGACGTGACCATC
CGGATGTCGCTTCAGCGCTCAACAACCGGCGGGGGAAGTATGAGGAAGCC
GAGCCACTGTATGAGCGGTCACAAGCCATACGAGAGAAGGCCTTGGGTCC
GGAACATCCTGCCGTCGCAACTGTGCTCAACAACCGGGCGGGGTTGTTGA
GAGCGCAGGGGAAGTATGAGGAAGCCGAGCCACTTTATGAGCGGTCACAA
GCCATACGAGACAAGGCCCTGGGTCCGGAACATCCTGCCGTCGCAACTGT
GCTCAACAACCGGGCGGGTTGTTGA
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