mRNA_Ecto-sp13_S_contig71839.18302.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig71839.18302.1
Unique NamemRNA_Ecto-sp13_S_contig71839.18302.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig71839.18302.1 vs. uniprot
Match: D7FUK7_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUK7_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 8.210e-13
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:   79 HVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQVGVP 189
            HVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQ G+P
Sbjct:  146 HVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQ-GLP 181
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BLAST of mRNA_Ecto-sp13_S_contig71839.18302.1 vs. uniprot
Match: A0A2P4XZV2_9STRA (SCF E3 ubiquitin ligase complex F-box protein grrA (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XZV2_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.390e-12
Identity = 32/59 (54.24%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:    1 QVNNAIVRSVLQGCSALRQLYLVGCRHVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQ 177
            QV N+++R+VLQGCS L+ L L GCRH+TDA F    SPFYVL    SL+ +S   C Q
Sbjct:    4 QVTNSVIRAVLQGCSNLQTLQLDGCRHITDAAFQPDHSPFYVLHACTSLKVVSFARCSQ 62
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BLAST of mRNA_Ecto-sp13_S_contig71839.18302.1 vs. uniprot
Match: W2PHJ8_PHYPN (Uncharacterized protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PHJ8_PHYPN)

HSP 1 Score: 68.6 bits (166), Expect = 1.760e-11
Identity = 31/59 (52.54%), Postives = 38/59 (64.41%), Query Frame = 1 
Query:    1 QVNNAIVRSVLQGCSALRQLYLVGCRHVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQ 177
            QV N ++R+VLQGCS L+ L L GCRH+TDA F    SPFY L    SL+ +S   C Q
Sbjct:   13 QVTNTVIRAVLQGCSNLQTLQLDGCRHITDAAFQPDHSPFYALHACTSLKVVSFARCSQ 71
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BLAST of mRNA_Ecto-sp13_S_contig71839.18302.1 vs. uniprot
Match: A0A024GT40_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GT40_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.320e-8
Identity = 30/60 (50.00%), Postives = 36/60 (60.00%), Query Frame = 1 
Query:    1 QVNNAIVRSVLQGCSALRQLYLVGCRHVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQV 180
            QVNN IVR VLQ C+ L+ L L  CRHVTD  F    SPF  L    SL+ +S+  C Q+
Sbjct:  119 QVNNPIVRGVLQHCTRLQVLELDACRHVTDQAFQPDYSPFCPLRACTSLKRLSIAKCSQI 178
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BLAST of mRNA_Ecto-sp13_S_contig71839.18302.1 vs. uniprot
Match: M4BZN3_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZN3_HYAAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.120e-7
Identity = 27/63 (42.86%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:    4 VNNAIVRSVL-----QGCSALRQLYLVGCRHVTDAGFHLQQSPFYVLLGAVSLETISVQGCPQ 177
            + N+I+R +       GCS+L+ L L GCRH+TDA F    SPFY L    SL+ +S   C Q
Sbjct:   31 IRNSILRQIPFRCPDLGCSSLQTLQLAGCRHITDAAFQPDHSPFYALHACTSLKVVSFARCSQ 93
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig71839.18302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FUK7_ECTSI8.210e-1394.59Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
A0A2P4XZV2_9STRA3.390e-1254.24SCF E3 ubiquitin ligase complex F-box protein grrA... [more]
W2PHJ8_PHYPN1.760e-1152.54Uncharacterized protein n=9 Tax=Phytophthora paras... [more]
A0A024GT40_9STRA3.320e-850.00Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
M4BZN3_HYAAE5.120e-742.86Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig71839contigEcto-sp13_S_contig71839:65..376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score73.2
Seed ortholog evalue8.2e-11
Seed eggNOG ortholog2880.D7FUK7
Preferred nameLRRC29
Model size312
KEGG koko:K10268,ko:K10275
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.modulation by host of viral RNA genome replication
EggNOG OGsKOG4341@1,KOG4341@2759
Cds size312
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463984.2377589-CDS-Ecto-sp13_S_contig71839:64..3761681463984.2377589-CDS-Ecto-sp13_S_contig71839:64..376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig71839 65..376 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig71839.18302.1prot_Ecto-sp13_S_contig71839.18302.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig71839 65..376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig71839.18302.1

>prot_Ecto-sp13_S_contig71839.18302.1 ID=prot_Ecto-sp13_S_contig71839.18302.1|Name=mRNA_Ecto-sp13_S_contig71839.18302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
QVNNAIVRSVLQGCSALRQLYLVGCRHVTDAGFHLQQSPFYVLLGAVSLE
TISVQGCPQVGVPVCCAVCCVIFFEVQFSVCTVEQSVIYVCSRSRLSSQN
RGVS
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mRNA from alignment at Ecto-sp13_S_contig71839:65..376-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig71839.18302.1 ID=mRNA_Ecto-sp13_S_contig71839.18302.1|Name=mRNA_Ecto-sp13_S_contig71839.18302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71839:65..376- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGAACAACGCCATCGTGCGGAGCGTGCTTCAAGGCTGCTCAGCCCT
TCGGCAGCTCTACCTGGTCGGTTGCAGGCACGTGACGGACGCGGGTTTCC
ACCTCCAGCAGTCGCCTTTCTACGTCCTCCTCGGAGCCGTTTCGCTCGAG
ACCATCAGCGTCCAGGGCTGTCCGCAGGTTGGTGTGCCTGTTTGTTGTGC
GGTGTGCTGTGTGATTTTTTTTGAAGTGCAGTTCTCGGTTTGTACTGTTG
AGCAATCGGTCATCTACGTTTGTTCTCGTAGCCGCCTCTCTTCCCAAAAC
AGAGGGGTGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig71839:65..376-

>mRNA_Ecto-sp13_S_contig71839.18302.1 ID=mRNA_Ecto-sp13_S_contig71839.18302.1|Name=mRNA_Ecto-sp13_S_contig71839.18302.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig71839:65..376- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGAACAACGCCATCGTGCGGAGCGTGCTTCAAGGCTGCTCAGCCCT
TCGGCAGCTCTACCTGGTCGGTTGCAGGCACGTGACGGACGCGGGTTTCC
ACCTCCAGCAGTCGCCTTTCTACGTCCTCCTCGGAGCCGTTTCGCTCGAG
ACCATCAGCGTCCAGGGCTGTCCGCAGGTTGGTGTGCCTGTTTGTTGTGC
GGTGTGCTGTGTGATTTTTTTTGAAGTGCAGTTCTCGGTTTGTACTGTTG
AGCAATCGGTCATCTACGTTTGTTCTCGTAGCCGCCTCTCTTCCCAAAAC
AGAGGGGTGTCG
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