mRNA_Ecto-sp13_S_contig718.18294.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: D7FN53_ECTSI (PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN53_ECTSI) HSP 1 Score: 868 bits (2244), Expect = 5.450e-303 Identity = 587/649 (90.45%), Postives = 595/649 (91.68%), Query Frame = 1
Query: 1 RFRSSDKKPTTNAAPGGAIKPRSRVPRLDPVQIQALTAAAAVAKKSARQPKSEENVEGKESGSKAAXXXXXXXXXXDGKTLSGFVKEGAGSRGGSGNKTANKREAAEMLGPDATEQLAAATAKVFLEKRTXXXXXXXXXXXXXXXXXXXXXXXXRVSDDGDGEDASLSAGKDVEAGDSWEKAGGRQDESKRKACAVEGDDEGGKGYGGKRTAGAGGGSVGEEVPVDGVVTRRGGLRSGSRGGGKDFPPENKTKGXXXXXXXXXXEDGVEVVEGEGPSTSQEIGE-KVEEAAQCDGTTGNAEEGEQAENGENDGETXXXXXXXXXXXXXXXXXXXXXXLEAGDEVDDRSKGRXXXXXXXKSGEGKASDGAEGXTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--EERVDVGAWAAAGPVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLVSSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTTSALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSFLSGEHHIEK 1938
RFRSSDKKPTTNAAPGGAIKPRSRVPRLDPVQIQALTAAAAVAKKS RQPKSEENVEGKESGS+A DGKTLSGFVKEGAGS GGSGNKTANKREAAEMLGPDATEQLAAATAKVFLEKR XXXXXXXXXXXXXXXXXXXXXXXXRVSDDGDGEDASLSAGKDVEAGDS EKAG RQDESKRKACAVEGD+EG KG G KRTAGAGGGSVGEE PV+GVVTRRGGLRSGS GGGKDFPPE+KTK XXXXXXX GVEV EGE PS SQE GE KVEEAAQCDG TGNAEEG+QAEN ENDGETXXXXXXXXXXXXXXXXXXXX LEAGDEVDD XXX K GEG+A DGAEG T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX EERVDVGAWAAAGPVARSPIVMVRHVDTLEVSPGAFC LFGLYGDVMKVKLV+SRGMALVQMRYPVQAANAQRLLDQTPLSGMT+EVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDT SALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSFLSGEHHIEK
Sbjct: 275 RFRSSDKKPTTNAAPGGAIKPRSRVPRLDPVQIQALTAAAAVAKKSVRQPKSEENVEGKESGSEATVVAGRGGGGGDGKTLSGFVKEGAGSSGGSGNKTANKREAAEMLGPDATEQLAAATAKVFLEKRXXXXXXXXXXXXXXXXXXXXXXXXXRVSDDGDGEDASLSAGKDVEAGDSSEKAGSRQDESKRKACAVEGDNEGEKGSG-KRTAGAGGGSVGEEAPVEGVVTRRGGLRSGSTGGGKDFPPEDKTKAEDVXXXXXXXXXGVEVAEGEDPSKSQETGEEKVEEAAQCDGPTGNAEEGKQAENVENDGETXXXXXXXXXXXXXXXXXXXXK-LEAGDEVDDXXXXXXXXEGGEKQGEGEAGDGAEGETKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERVDVGAWAAAGPVARSPIVMVRHVDTLEVSPGAFCHLFGLYGDVMKVKLVASRGMALVQMRYPVQAANAQRLLDQTPLSGMTIEVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTASALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSFLSGEHHIEK 921
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: A0A6H5KZ42_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ42_9PHAE) HSP 1 Score: 843 bits (2178), Expect = 8.590e-290 Identity = 557/657 (84.78%), Postives = 567/657 (86.30%), Query Frame = 1
Query: 1 RFRSSDKKPTTNAAPGGAIKPRSRVPRLDPVQIQALTAAAAVAKKSARQPKSEENVEGKESGSKAAXXXXXXXXXXDGKTLSGFVKEGAGSRGGSGNKTANKREAAEMLGPDATEQLAAATAKVFLEKRTXXXXXXXXXXXXXXXXXXXXXXXXRVSDDGDGEDASLSAGKDVEAGDSWEKAGGRQDESKRKACAVEGDDEGGKGYGGKRTAGAGGGSVGEEVPVDGVVTRRGGLRSGSRGGGKDFPPENKTKGXXXXXXXXXXEDGVEVVEGEGPSTSQEIGE-KVEEAAQCDGTTGNAEEGEQAENGENDGETXXXXXXXXXXXXXXXXXXXXXX--LEAGDEVDDRSKGRXXXXXXXKSGEGKASDGAEGXTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERVDVGAWAAAGPVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLVSSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHR--------FSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTTSALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSFLSGEHHIEK 1938
RFRSSDKKPTTNAAPGGAIKPRSRVPRLDPVQIQALTAAAA+AKKS RQPKSEE VEGKESGSK A DGKTLSGFVKEGAGS GGSGNKTANKREAAEMLGPDATEQLAAATAKVFLEKR XXXXXXXXXXXXXXXXXXXXXXXXRVSDDGDGE+ASLSA KDVEAGDS EKAG RQDESKRKAC VE DDEG KGY GKRTAGAGGGSVGEE V+GVVTRRGGLRSGSRGGGKDFPPE+K KG DGVEV EG+ PSTSQE GE KVE A QCDGTTGNAEEGEQ XX XXXXXXXXX LEAGDEV+ RSKGR K GE KASDGAEG T XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERVDVGAWAAAGPVARSPIVMVRHVDTLEVSPGAFC LFGLYGDVMKVK+V+SRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHR FSTTPTP+DKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHG VSSVDLDTHAKAPLDT SA ASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSFLSG+HHIEK
Sbjct: 491 RFRSSDKKPTTNAAPGGAIKPRSRVPRLDPVQIQALTAAAALAKKSVRQPKSEEIVEGKESGSKTATLAGRGGGGGDGKTLSGFVKEGAGSSGGSGNKTANKREAAEMLGPDATEQLAAATAKVFLEKRXXXXXXXXXXXXXXXXXXXXXXXXXRVSDDGDGEEASLSAEKDVEAGDSLEKAGSRQDESKRKACTVEVDDEGEKGYSGKRTAGAGGGSVGEEALVEGVVTRRGGLRSGSRGGGKDFPPEDKAKGAGVALEEKAKADGVEVAEGKDPSTSQETGEEKVEGATQCDGTTGNAEEGEQXXXXXXXXXXXXEPEVEAGGEDKXXXXXXXXXXKLEAGDEVEGRSKGRCEVEAGEKQGERKASDGAEGETKVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEERVDVGAWAAAGPVARSPIVMVRHVDTLEVSPGAFCHLFGLYGDVMKVKIVASRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHRQSCWDRFAFSTTPTPDDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGPVSSVDLDTHAKAPLDTISARASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSFLSGKHHIEK 1147
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: A0A7S3UWL0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL0_HETAK) HSP 1 Score: 116 bits (290), Expect = 1.620e-23 Identity = 79/211 (37.44%), Postives = 111/211 (52.61%), Query Frame = 1
Query: 1243 WAAAGPVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLVSSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTTSALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHN 1875
W+ G SP+V+V++ D V LFGLYGDV+KVK+++ + ALVQ +P+QAANA L+ TPL+G TL S+ + I D +A+DFS V +HR+ P D Y+ +L PP P L V NV + T E + +++ + GAVSSV ALA G + E + + AVHALIMTH+
Sbjct: 305 WSEGGG---SPLVLVQNADPAHVRGEHLAALFGLYGDVLKVKVMTHKACALVQYAHPLQAANAMAFLNDTPLAGQTLRCVRSTSFEIKDQSASDFSAVP-VHRYRGVERPLDPAYQRNLVPPGPRLAVANVG-EATEEALRALYGRFGAVSSV--------------ALAGDGTATVE-----------------MSDVQTAVHALIMTHH 479
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: A0A7S2WBW3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBW3_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 3.220e-18 Identity = 57/131 (43.51%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 1243 WAAAGPVARSP-----IVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLVSSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTL 1620
W A P A + ++ V +VDT + LFG+YGDV+KVK++SSR AL+Q YP A A++ LD PL G L + SSQ INDP+A D + L RFS T +P D Y+D L PP TL
Sbjct: 56 WLEALPEANTEDGCTRVLHVTNVDTNYCTTDMLAILFGVYGDVIKVKILSSREAALIQFAYPAMAFFARQHLDGCPLLGRNLAIAYSSQVGINDPSAADLTSRPTLRRFSATTSPSDPMYQDHLVPPTNTL 186
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: I2CQY0_NANGC (Polypyrimidine tract binding protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQY0_NANGC) HSP 1 Score: 90.1 bits (222), Expect = 9.420e-16 Identity = 70/223 (31.39%), Postives = 106/223 (47.53%), Query Frame = 1
Query: 1243 WAAAGPVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLVSSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTTSALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAERRLRVSF 1911
W+A P + +++V+ ++ V A LFGLYGDV +VK++ + A+V+M PVQA A+ LLD +PL G ++VK S+Q TI D A DF+ LH + +P Y +L P L + N+ D + T S+ + V V + P+ + ALV ++ EAAVHA I+ HN + R L V+F
Sbjct: 123 WSARLPGTDTCVLIVQGLNMEMVGAEALAALFGLYGDVRRVKMMPEQDSAIVEMERPVQAYVAKWLLDASPLGGRVIKVKSSTQDTIRDVQAQDFTAFP-LHGYRQYASPRHPSYLANLVEPTAVLRIANIDWDTSEITFRSLLTQQEGVMGV---------------------TRLLPSSHTSPALVSFQS------VEAAVHACILLHNQEVDGRLLYVTF 317
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: A0A7S3UV41_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV41_HETAK) HSP 1 Score: 84.0 bits (206), Expect = 7.380e-14 Identity = 46/114 (40.35%), Postives = 67/114 (58.77%), Query Frame = 1
Query: 1243 WAAAGPVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLVSSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFSGVQGLHRFSTTPTPEDKR 1584
W+ G SP+V+V++ D V LFGLYGDV+KVK+++ + ALVQ +P+QAANA L+ TPL+G TL S+ + I D +A+DF +GL P+ + R
Sbjct: 158 WSEGGG---SPLVLVQNADPAHVRGEHLAALFGLYGDVLKVKVMTHKACALVQYAHPLQAANAMAFLNDTPLAGQTLRCVRSTSFEIKDQSASDFRWPRGLPLSPPPPSGQPSR 268
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: T1ESN3_HELRO (RRM domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1ESN3_HELRO) HSP 1 Score: 80.5 bits (197), Expect = 3.880e-12 Identity = 52/147 (35.37%), Postives = 80/147 (54.42%), Query Frame = 1
Query: 1276 IVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLV-SSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPTATDFS-------GVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAV 1692
+V+V ++D +V+P A LFG+YGDV+KVK++ + + AL+Q P+QA A LD+ L G ++V PS + P F LHRF P K Y +++ PP TL + N+ P + ET+ ++F+KHG V
Sbjct: 168 VVLVSNLDEEKVNPDALFTLFGVYGDVIKVKIMFNKKDTALIQFNDPMQAQTAMLNLDKLKLWGKVIKVTPSKHTIVQMPKDGQFDINLTKDYTNSTLHRFK---KPNSKNY-NNIFPPAATLHLSNI-PSTSKETLVALFSKHGTV 309
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: A0A085NRF5_9BILA (Uncharacterized protein n=2 Tax=Trichuris suis TaxID=68888 RepID=A0A085NRF5_9BILA) HSP 1 Score: 79.7 bits (195), Expect = 2.430e-11 Identity = 71/228 (31.14%), Postives = 106/228 (46.49%), Query Frame = 1
Query: 1258 PVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLV-SSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPT--------ATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTTSALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAER-RLRVSF 1911
P+A SP+++V +++ +V+P A LFG+YGDV +VK++ + + ALVQ P QA AQ LD+ L T+ V S T+ P D+S + LHRF P K Y + + PP +L + N+ T E I + F +G V + + P D H A ++ +TE + AL+ HNL L+E LRVSF
Sbjct: 1711 PIAVSPVLLVSNLNEDKVTPDALFTLFGVYGDVQRVKILFNKKNSALVQYSEPTQAQLAQHHLDKVTLWSRTIRVSYSKHLTVQLPKEGQPDAGLTKDYS-LSLLHRFK---KPGSKNYLN-IYPPSASLHLSNIPTSTTEEFIVNAFVANGFV----VKSFKFFPKD------------------------HKMAIIQLESTEQGIEALVAMHNLQLSENAHLRVSF 1905
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: A0A0N4VR91_ENTVE (Uncharacterized protein n=1 Tax=Enterobius vermicularis TaxID=51028 RepID=A0A0N4VR91_ENTVE) HSP 1 Score: 75.1 bits (183), Expect = 5.510e-11 Identity = 68/221 (30.77%), Postives = 99/221 (44.80%), Query Frame = 1
Query: 1270 SPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLV-SSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTINDPT-----ATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHGAVSSVDLDTHAKAPLDTTSALASTGGSNAEPTKPSVQALVHMEADGKVRATEAAVHALIMTHNLTLAER-RLRVSF 1911
SP+V+V ++D V+P A LFG+YGDV +VK++ + + AL+Q P QA A + LD+ + V S + P D+S LHRF P K Y + + PP TL + N+ P++T E +T+ F +HG +P H A ++ E A++ALI HN LAE LRVSF
Sbjct: 89 SPVVLVSNLDENRVTPDALFTLFGVYGDVQRVKILFNKKDNALIQYAEPQQAQFAIQHLDKVRWHDKQMRVAASKHTNVQMPKEDAGLTRDYS-QSPLHRFK---KPGSKNYMN-IYPPSATLHLSNIPPNITEEYLTNAFEQHGF----------------------------QPKGFKFFPKDHKMALLQLNDVETAINALIEMHNFKLAENAHLRVSF 276
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Match: A0A1X7UYZ1_AMPQE (Uncharacterized protein n=2 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UYZ1_AMPQE) HSP 1 Score: 76.3 bits (186), Expect = 1.140e-10 Identity = 55/155 (35.48%), Postives = 79/155 (50.97%), Query Frame = 1
Query: 1246 AAAGPVARSPIVMVRHVDTLEVSPGAFCQLFGLYGDVMKVKLV-SSRGMALVQMRYPVQAANAQRLLDQTPLSGMTLEVKPSSQWTI-------NDPTATDFSGVQGLHRFSTTPTPEDKRYRDSLSPPCPTLVVDNVSPDVTAETITSIFAKHG 1686
A AG VA +P+V+ +++ +SP A LFG+YGDVM+VK++ S R ALVQ R QA NA L+ L G L + S + N+ T+ LHRF P K Y++ + PP PTL + N+ +T E + +F G
Sbjct: 273 AGAGVVAPTPVVLASNLNDKMISPHALFILFGVYGDVMRVKILYSKRDSALVQFREAQQAQNAVTHLNGCMLYGKKLHLTLSKHTQVQMPQPGSNEDALTEDFTNSPLHRFK---KPGSKNYQN-IYPPSPTLHLSNIPDGITEEYLRGLFTSTG 423 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig718.18294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig718.18294.1 >prot_Ecto-sp13_S_contig718.18294.1 ID=prot_Ecto-sp13_S_contig718.18294.1|Name=mRNA_Ecto-sp13_S_contig718.18294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=540bp MLGPDATEQLAAATAKVFLEKRTNKREAAEMLGPDATDQLAAATAKVRVSback to top mRNA from alignment at Ecto-sp13_S_contig718:57..4165+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig718.18294.1 ID=mRNA_Ecto-sp13_S_contig718.18294.1|Name=mRNA_Ecto-sp13_S_contig718.18294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4109bp|location=Sequence derived from alignment at Ecto-sp13_S_contig718:57..4165+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig718:57..4165+ >mRNA_Ecto-sp13_S_contig718.18294.1 ID=mRNA_Ecto-sp13_S_contig718.18294.1|Name=mRNA_Ecto-sp13_S_contig718.18294.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1620bp|location=Sequence derived from alignment at Ecto-sp13_S_contig718:57..4165+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |