mRNA_Ecto-sp13_S_contig7176.18289.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7176.18289.1
Unique NamemRNA_Ecto-sp13_S_contig7176.18289.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7176.18289.1 vs. uniprot
Match: D7FYN9_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYN9_ECTSI)

HSP 1 Score: 390 bits (1002), Expect = 4.380e-134
Identity = 203/209 (97.13%), Postives = 205/209 (98.09%), Query Frame = 3 
Query:  117 MTSIVELFPKARRLSFDLRTLLQYVERGHASADDAGMNLEEFGRQLDLLESLVGQERPTQREDWRRKLRELRNEHAFLRDQLGRFDQGRRKVGQEAKEREELLARRHAALPSSVMDAYAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQRSRLKNAHRKVLDMANILGLSNSILRVSERRQAVDRLLVLGGIIVTCAFLWWMWSRRVAS 743
            MTSIVELFPKARRLSFDLRTLLQYVERGHAS DDAGMNLEEFGRQLD+LESLVGQERPTQREDWRRKLRELRNEHAFLRDQLGRFDQGRRKVGQEAKEREELLARRHAALPSSVMDAYAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQRSRLKNAHRKVLDMANILGLSNSILRVS+RRQAVDRLLVLGGIIVT  FLWWMW RRVAS
Sbjct:    1 MTSIVELFPKARRLSFDLRTLLQYVERGHASPDDAGMNLEEFGRQLDVLESLVGQERPTQREDWRRKLRELRNEHAFLRDQLGRFDQGRRKVGQEAKEREELLARRHAALPSSVMDAYAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQRSRLKNAHRKVLDMANILGLSNSILRVSDRRQAVDRLLVLGGIIVTSVFLWWMWGRRVAS 209
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BLAST of mRNA_Ecto-sp13_S_contig7176.18289.1 vs. uniprot
Match: A0A835ZDP4_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDP4_9STRA)

HSP 1 Score: 267 bits (683), Expect = 1.340e-85
Identity = 133/206 (64.56%), Postives = 176/206 (85.44%), Query Frame = 3 
Query:  117 MTSIVELFPKARRLSFDLRTLLQYVERGHASADDAGMNLEEFGRQLDLLESLVGQERPTQREDWRRKLRELRNEHAFLRDQLGRFDQGRRKVGQEAKEREELLARRHAALPSSVMDAYAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQRSRLKNAHRKVLDMANILGLSNSILRVSERRQAVDRLLVLGGIIVTCAFLWWMWSRR 734
            MTSIVELFPKARRL++DL+T +Q++E+GHASADD G++L+E  +QL +L+SL  QERP QRE+WRRKL+EL  +  FLR+QL R++  R++ G+EA+ERE LLARR+AALPS V+DAYAEEGSSLLRS+RM+GDYLQ+GQA+L SLV+QR RLK   R+VLD+AN++G+S SILR+SERR+AVDRLLVLGG++     L++ W+R+
Sbjct:    1 MTSIVELFPKARRLAYDLQTQIQFLEKGHASADDVGVSLDELEQQLKILDSLASQERPAQRENWRRKLKELVGDKDFLREQLDRYNNSRQRQGREAREREALLARRNAALPSGVVDAYAEEGSSLLRSQRMMGDYLQSGQAALASLVDQRHRLKGVQRRVLDIANVMGVSGSILRMSERREAVDRLLVLGGMVFITGLLYYAWARK 206
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BLAST of mRNA_Ecto-sp13_S_contig7176.18289.1 vs. uniprot
Match: A0A7S2XZE9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZE9_9STRA)

HSP 1 Score: 186 bits (472), Expect = 7.760e-54
Identity = 104/211 (49.29%), Postives = 142/211 (67.30%), Query Frame = 3 
Query:  120 TSIVELFPKARRLSFDLRTLLQYVERGHASADDAGMNLEEFGRQLDLLESLVGQERPTQREDWRRKLRELRNEHAFLRDQLGRFDQGRRKVGQEAKEREELLARRHAALPSSVMDAYAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQRSRLKNAHRKVLDMANILGLSNSILRVSERRQAVDRLLVLGGIIVTCAFLW---WMWSRRVAS 743
            TS+VEL PKAR+L F+L+T    VE G A+A+D    L E  +QL++LESLV  ERP QRE WR+KL EL+ +  FLR  L R         +E +ER+ELL RR  A+PSSV++ Y EEG++L RS+ MV D   TGQA + +L++QRS LK+A RK+LD+AN+LGLS  ++R + RR A D+ +V GG+I+T  FL+   W  +R   S
Sbjct:    4 TSVVELVPKARKLLFELQTQQTLVETGKANAEDVYFGLSELSQQLNILESLVNNERPAQRESWRKKLTELQRDVDFLRASLDRHVAKSSSGLREQQERQELLLRRTQAMPSSVVENYMEEGAALTRSQAMVEDLTYTGQAIMANLLDQRSTLKSAQRKILDLANLLGLSGVLMRSANRRDATDKWIVFGGMIITLGFLYFCYWYSTRSTTS 214
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BLAST of mRNA_Ecto-sp13_S_contig7176.18289.1 vs. uniprot
Match: W7U6N0_9STRA (Golgi snap receptor complex member 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U6N0_9STRA)

HSP 1 Score: 184 bits (468), Expect = 2.550e-53
Identity = 101/209 (48.33%), Postives = 141/209 (67.46%), Query Frame = 3 
Query:  117 MTSIVELFPKARRLSFDLRTLLQYVERGHASADDAGMNLEEFGRQLDLLESLVGQERPTQREDWRRKLRELRNEHAFLRDQLGRFDQGRRKVGQEAKEREELLARRHAA-----LPSSVMDAYAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQRSRLKNAHRKVLDMANILGLSNSILRVSERRQAVDRLLVLGGIIVTCAFLWWMWS 728
            MTS+ EL PK ++L+F+L+  ++ VE G+ S D+  M L E  RQ+ +L +LV QERP  RE W+R++ EL +E  FLR  L RF Q R KV QEAKEREELLARR+        P+  ++   EEG+S  RS  M+ D L +GQA+L++L++QRS LK+A +KVLD+ N+LG+S+ I  ++ERR  VD+L+V GG+ VT   LW  W 
Sbjct:    1 MTSVAELLPKTKKLAFELQGQVRQVEIGYVSPDNVFMGLGELERQISILHTLVAQERPGAREQWQRRIGELHSEAVFLRTVLNRFLQSRGKVAQEAKEREELLARRYGKGGDLEAPARAVEELLEEGASYQRSSAMMNDILMSGQATLSNLLDQRSSLKSARKKVLDVLNLLGVSHRITGMAERRDTVDKLIVAGGMAVTLLVLWLCWK 209
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BLAST of mRNA_Ecto-sp13_S_contig7176.18289.1 vs. uniprot
Match: B8BUE6_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUE6_THAPS)

HSP 1 Score: 156 bits (395), Expect = 1.630e-42
Identity = 91/207 (43.96%), Postives = 133/207 (64.25%), Query Frame = 3 
Query:  117 MTSIVELFPKARRLSFDLRTLLQYVERGHASADDAGMNLEEFGRQLDLLESLVGQERPTQREDWRRKLRELRNEHAFLRDQLGRFDQGRRKVGQEAKEREELLARRHAAL----PSSVMDAYAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQRSRLKNAHRKVLDMANILGLSNSILRVSERRQAVDRLLVLGGIIVTCAFLWWMW 725
            MTSIVELFPK+R+L++D R  L  V+ G     +  ++L+E  RQLDL+E+L  +E P QRE W+RK+ ELR +   +R+Q   +D+      ++ KER+ELLARR         +  M   +EE  SL  S  M+ D L +GQASL++LV QR R++  +RK+LD+ N +GLSNS +R+ ERR A D  LV GG+IVT   +++++
Sbjct:    1 MTSIVELFPKSRKLAYDSRQQLSQVQNGLICPSELFLSLDELSRQLDLMENLTNKETPAQREIWKRKILELREDAQSIRNQGNHYDRMVSAGIRQRKERDELLARRRRNRGNGGDADEMQQLSEEADSLATSHGMMNDLLSSGQASLSNLVGQRQRMRWVNRKMLDIGNKIGLSNSTMRMIERRDATDAWLVFGGMIVTLLVIYFLY 207
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BLAST of mRNA_Ecto-sp13_S_contig7176.18289.1 vs. uniprot
Match: A0A6U0P085_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A6U0P085_9STRA)

HSP 1 Score: 147 bits (372), Expect = 4.580e-39
Identity = 84/212 (39.62%), Postives = 129/212 (60.85%), Query Frame = 3 
Query:  117 MTSIVELFPKARRLSFDLRTLLQYVERGHASADDAGMNLEEFGRQLDLLESLVGQERPTQREDWRRKLRELRNEHAFLRDQLGRFDQGRRKVGQEAKEREELLARRHAAL-------PSSVMDAYAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQRSRLKNAHRKVLDMANILGLSNSILRVSERRQAVDRLLVLGGIIVTCAFLWWMWSR 731
            MTS+ ELFPK+R+L++D R  L  V+     A +   +L+E  RQL++++SLV Q+ P QR+ W+RK+ ELR +   +R Q   +D+      +E KEREEL+  RH            + M+ + EE  SL  S+ MVGD L +GQ+ L SL++QR+R++   R VLDM + +GLSN+ +R+ ERR   D   V GG+ +T   ++++W R
Sbjct:    1 MTSVNELFPKSRKLAYDARQQLCQVQNKSLHASELFFSLDELSRQLNIMDSLVSQQTPAQRQVWKRKILELREDANSIRRQGQYYDRMVSANVREQKEREELMTLRHRRGGRGRGDDAENAMNDFTEESESLAMSQNMVGDLLVSGQSQLNSLMDQRNRMRGVKRLVLDMGSKVGLSNATMRMIERRDTTDAYFVFGGMFLTILIIYFVWFR 212
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BLAST of mRNA_Ecto-sp13_S_contig7176.18289.1 vs. uniprot
Match: A0A7S3PUS9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUS9_9STRA)

HSP 1 Score: 147 bits (370), Expect = 9.020e-39
Identity = 87/211 (41.23%), Postives = 130/211 (61.61%), Query Frame = 3 
Query:  117 MTSIVELFPKARRLSFDLRTLLQYVERGHASADDAGMNLEEFGRQLDLLESLVGQERPTQREDWRRKLRELRNEHAFLRDQLGRFDQGRRKVGQEAKEREELLARRHAALPSSVMDA------YAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQRSRLKNAHRKVLDMANILGLSNSILRVSERRQAVDRLLVLGGIIVTCAFLWWMWSR 731
            MTSIVELFPK+R+L++D R  L  V+    SA +  ++L+E  RQL ++E L+ +E P QRE WRRK+ EL+ + + +R Q   + +      +  +EREELL R          D+       AEE +SL  S+ MVG+ L +GQA L SL++QR R++ A R VL++ N +GLSNS +R+ ERR   D  LVL G+++T   ++++W R
Sbjct:    2 MTSIVELFPKSRKLAYDARQQLSQVQNNLLSATELYISLDELQRQLSIIEQLLSRETPAQREIWRRKILELQEDASSIRRQGEYYHRMVNSNLRVQREREELLTRXXXXKKDGFGDSELGIQDLAEESTSLASSQNMVGELLMSGQAQLNSLIDQRRRMRGAKRMVLNIGNTIGLSNSTMRMIERRDENDVKLVLAGMVLTLLVIYFVWIR 212
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BLAST of mRNA_Ecto-sp13_S_contig7176.18289.1 vs. uniprot
Match: A0A7S2CFP0_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CFP0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.730e-38
Identity = 85/207 (41.06%), Postives = 122/207 (58.94%), Query Frame = 3 
Query:  117 MTSIVELFPKARRLSFDLRTLLQYVERGHASADDAGMNLEEFGRQLDLLESLVGQERPTQREDWRRKLRELRNEHAFLRDQLGRFDQGRRKVGQEAKEREELLARRHAALPSSVMDAYAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQRSRLKNAHRKVLDMANILGLSNSILRVSERRQAVDRLLVLGGI--IVTCAFLWWMWSR 731
            MTS+VELFP+ R+LS+DL+  L+ VE    +  D  + LEE  RQ   LE LV QE   ++++W+ K+R++     +L  QL  +     +   E  ER+ELL R  ++LP+SV+ AY EEG SL RS  +V + L     ++  L++QR  LK   RKVLDM   LG+S S +R+ ERR  VD  +V GG+  +  C +L W W R
Sbjct:    6 MTSVVELFPRTRKLSYDLQQQLREVEAKRMAPSDMELGLEELKRQTQTLEMLVEQE-VNRKDEWKAKIRDVCMTRDWLDSQLRHWRTQHDRAAVEEAERQELLGRVRSSLPTSVIGAYDEEGRSLSRSNNVVANLLDGAGEAMAELMDQREMLKGTQRKVLDMLTTLGVSKSTIRIIERRNVVDNAIVWGGMGFVTLCLYLLWRWVR 211
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BLAST of mRNA_Ecto-sp13_S_contig7176.18289.1 vs. uniprot
Match: B5Y455_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y455_PHATC)

HSP 1 Score: 145 bits (365), Expect = 4.030e-38
Identity = 90/207 (43.48%), Postives = 123/207 (59.42%), Query Frame = 3 
Query:  117 MTSIVELFPKARRLSFDLRTLLQYVERGHASADDAGMNLEEFGRQLDLLESLVGQERPTQREDWRRKLRELRNEHAFLRDQ----LGRFDQGRRKVGQEAKEREELLARRHAALPSSVMDAYAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQRSRLKNAHRKVLDMANILGLSNSILRVSERRQAVDRLLVLGGIIVTCAFLWWMW 725
            MTSI ELFPK R+L++D R  +  V++G  SA D  + LEE  RQL+ +E LV +E P QR+ W RK+ ELR+E   L  Q         + R   GQE   R+ELL RR      S +   ++E SSL +S+ MV   +  GQASL  L+EQR RL+  +R V D+ N LGLS S +++ ERR   D  LV GG+IVT   ++++W
Sbjct:    1 MTSIGELFPKCRKLAYDARQQVAQVQQGVVSATDLYVLLEELSRQLNAMEELVYRETPVQRDVWNRKIAELRHECTLLHQQGTQAAHSASRYRNPYGQE---RDELLRRRRRRGNESDVQDLSQESSSLEQSQNMVFGLIDQGQASLNGLIEQRQRLRGVNRMVFDIGNRLGLSQSTMKIIERRDITDAYLVAGGMIVTILVIYFVW 204
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BLAST of mRNA_Ecto-sp13_S_contig7176.18289.1 vs. uniprot
Match: A0A7S2XN21_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XN21_9STRA)

HSP 1 Score: 144 bits (363), Expect = 8.640e-38
Identity = 87/210 (41.43%), Postives = 130/210 (61.90%), Query Frame = 3 
Query:  117 MTSIVELFPKARRLSFDLRTLLQYVERGHASADDAGMNLEEFGRQLDLLESLVGQERPTQREDWRRKLRELRNEHAFLRDQLGRFDQGRRKVG---QEAKEREELLARRH----AALPSSVMDAYAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQRSRLKNAHRKVLDMANILGLSNSILRVSERRQAVDRLLVLGGIIVTCAFLWWMW 725
            M SIVELFPK R+L++D R  L  V+ G     +  M LEE  R LD++E+L+ +E P+QRE WRRK+ ELR++   +R Q   +D   R VG   ++ +ER+ LL+RR     A      ++  A+E  S+  S+ M+GD L +GQASLT L+EQR R+K   R +LD+ + +GLSNS +R+ ERR   D   V GG++V    +++++
Sbjct:    1 MASIVELFPKNRKLAYDARQQLAQVQNGLLPPSELFMLLEEISRSLDIMENLLSRETPSQREVWRRKILELRDDANSVRRQAEHYD---RMVGANVRQQRERDALLSRRRRTRRATGEEGEINDLADEYQSMESSQIMMGDLLASGQASLTGLIEQRQRMKGVKRVMLDIGSKIGLSNSTMRIIERRDVTDAYFVFGGMVVCLLLMYFLY 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7176.18289.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYN9_ECTSI4.380e-13497.13Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A835ZDP4_9STRA1.340e-8564.56Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A7S2XZE9_9STRA7.760e-5449.29Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
W7U6N0_9STRA2.550e-5348.33Golgi snap receptor complex member 2 n=2 Tax=Monod... [more]
B8BUE6_THAPS1.630e-4243.96Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A6U0P085_9STRA4.580e-3939.62Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3PUS9_9STRA9.020e-3941.23Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S2CFP0_9STRA1.730e-3841.06Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
B5Y455_PHATC4.030e-3843.48Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2XN21_9STRA8.640e-3841.43Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7176contigEcto-sp13_S_contig7176:978..5356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score393.3
Seed ortholog evalue7.2e-107
Seed eggNOG ortholog2880.D7FYN9
Preferred nameGOSR2
Model size1122
KEGG rclassRC00004,RC00061,RC02742,RC02857
KEGG koko:K00627,ko:K03935,ko:K08496,ko:K19200
KEGG TC3.D.1.6
KEGG ReactionR00209,R02569,R11945
KEGG Pathwayko00010,ko00020,ko00190,ko00311,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04130,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00010,map00020,map00190,map00311,map00620,map01100,map01110,map01120,map01130,map01200,map04130,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00143,M00307
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000149,GO:0002682,GO:0002791,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0005798,GO:0005801,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006892,GO:0006896,GO:0006900,GO:0006901,GO:0006903,GO:0006906,GO:0006950,GO:0006986,GO:0006996,GO:0007034,GO:0007154,GO:0007165,GO:0008104,GO:0008150,GO:0009987,GO:0010008,GO:0010033,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0022607,GO:0023052,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030968,GO:0031090,GO:0031201,GO:0031224,GO:0031347,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033116,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034976,GO:0035966,GO:0035967,GO:0036498,GO:0042147,GO:0042175,GO:0042221,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045184,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048280,GO:0048284,GO:0048583,GO:0050708,GO:0050776,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0070201,GO:0070727,GO:0070887,GO:0071310,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0080134,GO:0090087,GO:0090114,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827,GO:1903530
Exons4
EggNOG free text desc.vesicle fusion with Golgi apparatus
EggNOG OGsKOG3251@1,KOG3251@2759
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-17_000170.1
EC1.6.5.3,1.6.99.3,2.3.1.12
Cds size630
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko01002,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7176.18289.1prot_Ecto-sp13_S_contig7176.18289.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7176 1354..5240 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463983.0719366-UTR-Ecto-sp13_S_contig7176:977..13531681463983.0719366-UTR-Ecto-sp13_S_contig7176:977..1353Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7176 978..1353 -
1681463983.1317654-UTR-Ecto-sp13_S_contig7176:5240..53561681463983.1317654-UTR-Ecto-sp13_S_contig7176:5240..5356Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7176 5241..5356 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463983.08611-CDS-Ecto-sp13_S_contig7176:1353..15211681463983.08611-CDS-Ecto-sp13_S_contig7176:1353..1521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7176 1354..1521 -
1681463983.100181-CDS-Ecto-sp13_S_contig7176:2431..25691681463983.100181-CDS-Ecto-sp13_S_contig7176:2431..2569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7176 2432..2569 -
1681463983.1100764-CDS-Ecto-sp13_S_contig7176:4185..43121681463983.1100764-CDS-Ecto-sp13_S_contig7176:4185..4312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7176 4186..4312 -
1681463983.12077-CDS-Ecto-sp13_S_contig7176:5043..52401681463983.12077-CDS-Ecto-sp13_S_contig7176:5043..5240Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7176 5044..5240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7176.18289.1

>prot_Ecto-sp13_S_contig7176.18289.1 ID=prot_Ecto-sp13_S_contig7176.18289.1|Name=mRNA_Ecto-sp13_S_contig7176.18289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=210bp
MTSIVELFPKARRLSFDLRTLLQYVERGHASADDAGMNLEEFGRQLDLLE
SLVGQERPTQREDWRRKLRELRNEHAFLRDQLGRFDQGRRKVGQEAKERE
ELLARRHAALPSSVMDAYAEEGSSLLRSRRMVGDYLQTGQASLTSLVEQR
SRLKNAHRKVLDMANILGLSNSILRVSERRQAVDRLLVLGGIIVTCAFLW
WMWSRRVAS*
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mRNA from alignment at Ecto-sp13_S_contig7176:978..5356-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7176.18289.1 ID=mRNA_Ecto-sp13_S_contig7176.18289.1|Name=mRNA_Ecto-sp13_S_contig7176.18289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4379bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7176:978..5356- (Ectocarpus species13 EcNAP12_S_4_19m)
TTCGACGTCTAACCTTATCAACTTGGGGTATTGGTTGCTCTCTAGTGTAT
TCTCTCGAGAGCTCTCGTTTGTTTTTGCAGGGATCATCGGGATAAATCAG
TCGTGGATGACACGACATGACGTCAATCGTGGAGCTGTTTCCGAAAGCGA
GAAGGTTGTCGTTTGATCTGCGGACGTTGCTGCAGTACGTCGAGAGAGGA
CACGCGAGCGCCGACGATGCCGGCATGAACCTGGAGGAGTTTGGCCGGCA
GCTGGACCTGTTGGAGAGCCTGGTGGGGCAGGAGCGGCCAACACAACGAG
AAGACTGGCGAAGGTATGCCATTTACACGCAGTGTACGCAGATAACTACA
AGCAAGTCTGCGGGCAAATACACAGCGGTGCAAAGCAGCAGGAGATGCTC
CGAGAGAGACGACAAGAGGCACCTCTACCGCTGTAGTCAACAGCAGTGCA
GTCCGTAAGTGTTAAGGGGGGTGCGGGTCAGTGTAGAGAGCACTCTTGTG
CAATGCAGGTCAACTGAGATTGCAGATAAGAAACTCGTAGATTTGCTCGA
AAACACCACACGATGCACAGCAGCACAAAATCGTATGCACATGTGCAGCT
GGCACTCTTCCTCCGTGCAACTATCTTCACTACATGTACACACATGGTCG
TATCCAAGCATCGTTGGGTCTCGTTTGAGCCACTGTCTAGACGTCTACAC
TACAGCAGCGTACGTATCATGGTGAAATAGTTGTCAAGAAGAAACATTTC
GACAGTGGATTCGCTGGCACAGGCGGGTTGGTGTATGGTGTGCGTATCTC
ATCACGCGCTGCTCATCATGGATCCGACGTCCCAGAGTCAGCGTCACTCC
TTTCATTTGGCTTGCTTGCTGTTGTACAGCTGATGATCTGACGAGGGTGC
CGAGTTTGGAGGTGCTTGACGACAGCAGCAGTAGCACGGTGACCTGCAAT
TTTTGGTATTCATACCGGTCCTGCTTCTATGATCACCCTGTGTACTGCTG
ATCGTTGATGCCGCTCAATCGCCGCCGCCACCCGTCCATCCCAGGAAGCT
CCGGGAATTGCGAAACGAGCACGCTTTCTTGCGAGATCAGCTTGGAAGGT
TCGACCAAGGGCGGCGAAAGGTCGGCCAGGAGGCCAAGGAACGGGAGGAG
CTGTTGGCGCGAAGACATGCGGTGAGACTCGACTTCCGCTCTTCAGCGTT
GTCCCTCAAGCAAAAGCACACGGAATAGTTGGAGAACTGATCGGCCGCAT
CGGAAGCCGGTGATGCTGGTAGATTATGCATACCCATTCGAGACAAAACC
AAAGAGCAGTTGAAGTAGATGTGTTCAAGTCTTTGTCTTAACAGTGAGTT
GGAAGAAAACAAGAAAACCGGCTGGATACTGACGCGCGCTTGGCGCTACA
ATAACGGGTACAGTATCTTGCTGGTGGGGAGTGCCAAGAAGTGCAGGTCG
CGAAGACGAGATGGAATTACACCTGTGTTTATTATTGCCGCTGGCCTGTT
TGTCGCATCATGAGCGGGTCAGATGCGCATGGTGGCGTGTAATTTCTCGG
ACGGGTCAGGTGGTACAGCTGCAGTAGTCCGTGCCCCCAGAACTGATGGT
CCGGCCACCTGTTAGGGGGGGTGTAACGCCATCTAGAAGGGTGGCAAAAT
AAGGGGGACCTTTGTTCGTCGTGATACCGCTAATATATAGCAGCTCCTGT
GTTGCCTCTTGTCGCGTATCACGAGCAGCATGGTTGTATCCTCTCGTCTT
GAGCATGAGCACCATGATTTCAGTCTCTTGGCTTCCCTCATATCTTCACC
AACCATAGGGCTGCAGCAGATTGTTATGGCTAAGGCTGTTGAAAAGTTTC
TGGAGTCCGATTAGCCCTCCATGTACGGTATCGTATCACCGCCTCGTGCC
AGGCAAGTTGTGCAACGTCTTTGCAAACCAAGGAAACTGGAGGGTTAGGG
TTGCGCGAACACAGTTGTGTGAGAAGTCGCATCCCCAGTTGACCGACTAT
CTACGTAGCTGCCATTCTCCCGATGAGAAGCCAACAGGGCGATGATGTGT
GGATGATGCCGATGCAGAAAACGGTGGTTGACCTCTTCTTGGTGGTGAGC
ATTCGAGCCTCGAGAGTAAGTCGAAGGGGTTGCGACCACTGCTGTAGCAC
GTAGCACTTGCGGTCTCCTATGCATAACTCTATATTTGGAACCCTTCTTT
TTTCTGCCAGACAAATTTTGAGATGATTTTCCGCGTCTTGTACATGCCCT
CATCGCAGAACCCCTCTCCCATCGCCAACGTATTCGAGGTTTTTGAGTTT
TCTGGGTTTCTTTCCATGCATCATGTTTTAGACGTCAGGGAGGTGTCTCC
TTGCGGTGTTCTATGCTAGGGCCAGCGGAACTCGCACACCTTGGCGCTTT
GTCCGAGTCACGGCACCTTGTCAAGAGAATTTTATGTTGAGGAATCTCAT
TTCTATCTTGACGGTGTTGTGTTTTGTACACTCACGAATAAAAAGGGTAT
TTTTACCCATATCCATGCACGTATCACAGCAGAGACCGGAGGTTATGCTT
GCCGTTGACTGCCCTCAAGGCAAGACGTTTTCTTCATTGTTCGTATGCAT
TCTGTGGGTCATGCGGGTCATGCGACCATTCCATTTCTTTTGGTCCCTCG
CGGTTGTGGTGGTGCCGTTGGTATATATAGGCCAATTACCCAAAAGACTG
GGTATGAAACTATGATGGAAACTTTGATGGTCGACCGTTCGCCTTTCTTT
ACTCTCTCTTCTCGTTCGATCAATGATCAATGGCCAGGCTCTGCCATCAT
CGGTGATGGACGCCTACGCTGAGGAGGGGAGCTCCTTGCTAAGGTCGCGG
AGAATGGTCGGTGATTACCTACAAACAGGCCAAGCTTCGCTCACCAGTCT
CGTGGAGCAGAGGTCGCGCTTGAAGGCGAGTAGGCTGCGCATTCGCTGGC
TGTTGTTGGCGGCCTCGATGGTGTCATCTCTGATCTCCCACCGCCTCATG
TGTGTGTCGGGGGGCCTAGGCAACGGTTCGGGTTGGGGTTGGGGTTAGGG
TCAGGGTTACCTTACGAAGTTGTCGGCACTCTGCTGTCGATGGATAGTTT
TCCGTGGGCTTGGCTTAGTTTGGGAAGGACGGCAGTGTGCGGGGACATAC
ATGCCTGTGGTTGCAATGTCTTCTGAGTTGTCGCTCTCCCCACTGGGTTG
CCTCCCCCCCCCCTTCCCCCAACGATTAAATACAATCCCCGAGGTTGTCC
CAACAATGTTGATGTCCCTTGATATAGTAGTAATTCTTTCAGGTTCTCAT
CCTAACGTACACTTTAAGTTACTTTACAGGGGGGGGTATTCCCGAAAATG
CGAGGTCCACCCTCCCAGGAGGTACAGGAGCACATACCGGAGCATGTCTA
CAGCGCTTGTCCCGGCGACCGTCAAATGCTGATGTTGTCATTCTGTTGGT
TGCTGTGCCGTCGTGCCGTGTTACACTCTCATTTTCCCCCCATCTCCTTT
GGGTTAGGGTTAAAATTCTTGGTCCTCTTTACCTGCGGTAGCTCAGAGAG
TGGTAGGGTAGTCGTCACCATGGCACAGCACTAAGATTCCAAGGTTCTGG
CTTGTACACAACAACTTCGAGGAACACACCCGCCCTGCCGATGCCTTTTT
TCCTAGGTGTTGATGGGCCGACGTTATTCTCGCTCTTTTTTGTGCCTAGA
AACTTGAAAAAGGCTGCCCAGTCCCAATGTAATGTGAAAGCCGGATGGTA
CACCATTGCATTGTTTATGTCAACGGCGTTCCCCCCCCCCGCCCCCGATG
CCCTCCTTTCGTACGATCGTTTTTTTGTCCCCCAGAACGCACATCGAAAG
GTGTTAGATATGGCGAACATCCTTGGCTTGAGCAACTCCATCTTGAGAGT
GTCAGAAAGAAGACAGGCCGTTGACAGGCTCTTGGTTCTTGGGGGCATCA
TCGTAACGTGTGCGTTTTTGTGGTGGATGTGGAGCAGGCGGGTTGCATCG
TAGGTTCCCTGTTTCCCCTGTGACCCCAAATGTGATGCGTGGGTCGTGGC
TCTTGCTTGGTGTTGCGGTGCCGTACGTGGCACCGGTCGCTCAAAAGCGC
GGGAGATACACTAACAGAGCACCGCCGTTGTAGTGTCAGCACTGAGTCTT
GAGTAGTTTAAAAGTGTATTGTTTTCGTTGTTAGTGCCTTGTACGCGGAG
TTTGACGTCCTGCTCAATAGTTGTAAGGCGCGCCGCCTTTGCGGTGCGCA
ACTGATTTTGCGTGGCTGGAGTGTTCGCTCGGGCGGTATCAGACATGAGG
GACAATGAAGAGGAACAAAGGTCATTTCATTATATTCCATGGTATTCTAG
AAATGGTATAGCCTGGACTTGGCCTGGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7176:978..5356-

>mRNA_Ecto-sp13_S_contig7176.18289.1 ID=mRNA_Ecto-sp13_S_contig7176.18289.1|Name=mRNA_Ecto-sp13_S_contig7176.18289.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=630bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7176:978..5356- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTCAATCGTGGAGCTGTTTCCGAAAGCGAGAAGGTTGTCGTTTGA
TCTGCGGACGTTGCTGCAGTACGTCGAGAGAGGACACGCGAGCGCCGACG
ATGCCGGCATGAACCTGGAGGAGTTTGGCCGGCAGCTGGACCTGTTGGAG
AGCCTGGTGGGGCAGGAGCGGCCAACACAACGAGAAGACTGGCGAAGGAA
GCTCCGGGAATTGCGAAACGAGCACGCTTTCTTGCGAGATCAGCTTGGAA
GGTTCGACCAAGGGCGGCGAAAGGTCGGCCAGGAGGCCAAGGAACGGGAG
GAGCTGTTGGCGCGAAGACATGCGGCTCTGCCATCATCGGTGATGGACGC
CTACGCTGAGGAGGGGAGCTCCTTGCTAAGGTCGCGGAGAATGGTCGGTG
ATTACCTACAAACAGGCCAAGCTTCGCTCACCAGTCTCGTGGAGCAGAGG
TCGCGCTTGAAGAACGCACATCGAAAGGTGTTAGATATGGCGAACATCCT
TGGCTTGAGCAACTCCATCTTGAGAGTGTCAGAAAGAAGACAGGCCGTTG
ACAGGCTCTTGGTTCTTGGGGGCATCATCGTAACGTGTGCGTTTTTGTGG
TGGATGTGGAGCAGGCGGGTTGCATCGTAG
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