mRNA_Ecto-sp13_S_contig7174.18288.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7174.18288.1
Unique NamemRNA_Ecto-sp13_S_contig7174.18288.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7174.18288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7174contigEcto-sp13_S_contig7174:3529..6958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463982.9751785-CDS-Ecto-sp13_S_contig7174:3528..36081681463982.9751785-CDS-Ecto-sp13_S_contig7174:3528..3608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7174 3529..3608 +
1681463982.9856176-CDS-Ecto-sp13_S_contig7174:6888..69581681463982.9856176-CDS-Ecto-sp13_S_contig7174:6888..6958Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7174 6889..6958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7174.18288.1prot_Ecto-sp13_S_contig7174.18288.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7174 3529..6958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7174.18288.1

>prot_Ecto-sp13_S_contig7174.18288.1 ID=prot_Ecto-sp13_S_contig7174.18288.1|Name=mRNA_Ecto-sp13_S_contig7174.18288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=50bp
GGAEDSWLVAVRDVPRYTVERAQGAGREQSVQRLAQRRGNRGSYIQRDPT
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mRNA from alignment at Ecto-sp13_S_contig7174:3529..6958+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7174.18288.1 ID=mRNA_Ecto-sp13_S_contig7174.18288.1|Name=mRNA_Ecto-sp13_S_contig7174.18288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3430bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7174:3529..6958+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCGCCGAAGACTCTTGGCTGGTAGCCGTTCGTGACGTGCCCCGGTA
CACGGTGGAGCGAGCACAGGGGGCGGGCAGGTGTGTAATTTATTCTCGTC
TTTGTCAGGCGGGGCGAATAGACAAGAAACAGTATTGAAAATTATCTATT
GTTTACAGGATCGATTCTTATCTGGCCATCTGACAGGTCTAGCACCTACT
GTAGTACGTGAAACGTCAAGCGCCCCGACTGCTTTGAAACAAATGACTGG
GAGGCCCAAGCGACATTGTCGTCGCCCCACGCCCCCCGATGAGGTGGTGC
GTATGGCAGACAGGACGCGATACGACGATGCCTGGTATGAGAAAAAAGCA
GTGCGAACTGGCCAAAGTTACAAAACCCGAAAGAACGATCCACCAGGATC
CGGGAAACGAGAAGATTCGGGCGTGGAAAGCAATGGAGAAGCAGAAGATG
AAAGACGCAATGTCGTGCATTAACAAGAAGAAGGACGCGGGAACAGAGCC
GGCACAGCCGATGGACGTGGATGGACTGAAGGAGTCGACACGTGTACCAC
GACAGCAGCAGCAGGCGATCGACGTGACTAGGCGAACGGAACGGGCTCCC
GTGTCGACAGTAGCAAATGCGAGCACCACCAGAAAAAGGGAAGGGCGTGG
CGCTACATCGAAGGAGGCACGCAAAATTAGCAAGGCTGCGGCTACTTCAA
CGCCTGAGGATGTGAAGGCTAACAAGAAGGCGCGCAAAGTGCGTATCCGG
AGGCAACCTATGGTCTCTTCGACGAACATGAAGCTTGTAGGATGACGAGA
GTGCCCAATTTATGAAGGGAAGCAGGGACAAAGCTCAAGAGTTCGGGGGT
ACGGTCCCAATGCGGGCAAGTAGCAGCCCAATGCGATCATGTCGGCCCCC
CTCTCTGACGGTTTGTGTGTCGATGGCTCGGATTGTCTCGAGATCTTGGA
TGGAGCGCTTTTTTCAAGCGTTCCGCCCTTGCGAGGCTCGAAACTTACTA
AATACATGTTCGACCCACTCCGATCGTTTGGGCGAGACCACGGTTGAAAT
CAAGAAAGAACACCTTGGTGCCACCGTTCGATCACGGCACGTACACCCTG
GAGAATAAGGCCAAAGTCACTTTGCGAGAGCTCCTGAAACACCGGAACGA
TGGTGGTGTGATATTGGAAGCCGACCAACTGCGGTTCATTCTCCACTTGG
TCACGACGCACGTGAACATGATGGTTCACGTCGTGTCATGTTTGAATCAA
AGCCACAATGTGACAACGGGTATGCCGTGGAACCCAGCCGTGGAACCCAA
CCGGCGCTCTCAAGACAGAGGCAAAACCGGAACAGAGGGTGGAGCTGGAA
ACAATCATCAAGCGGGTGGATTCTCTGCGGGACCTGATGTTGAAATCTTC
ACTAAAGCCGTCGTGGAGGACACCCTTCCTGCGGCTTTCTGGGAGGTAGC
TGGGAGTCCCGTTACACGAGTTCGCGAAGCAGGATGGATCGCTGAGACAG
ATAAAGTTTCTGGACGGTCTTCAATGCGGCCATAACCCCGAATGTTGTCC
GGAAAAATGTTCAAGGGCGACGTTGTGCGAGGTGGTTACGCCGAAGGACC
ACCGCCACTCCGCAAACAAACGCGGGTCCGAAAGGCAACACTGAGGACCA
TCATCGTGCAATTGACAAGCGCATATCGCTTGGGCCGCTCGGAAAACCTC
CTCGAGGCATTTTACTCACTGTCTCAGGAGGAGTGCCAGCTTGTGGAAGA
TCACCTCCGCCACTGGAATGGCAACCTGAAATGCAGGCTCTCAGTGATCT
TGGTCTGCTGGCGGAAGATGTGACAAGCGCAACCGATACCGACCTGGAGG
GAGATAAATCGCATACGTCACGGTATACCGTGGCGCGGAACCAGTTTTTG
AATCCCTACATATCACCAGCGACGGTCGTTGCGTGTGGGATTCGGGACGC
AGAGAAGTACGGAAGCCTTCAACTGGACAAGCTGGACACGAATTCATTCA
GCCACTCGCGGTGTGGCACGCATGTATTTGAAAAAGCGATCGGGATGGTT
CGTTCGTGTGCAAAAGCAGTGCACAAGACTATTGGAACATTTGAGAAAAT
GGGTCAGAACGCAAGGGCCCTGGATCGTAAAGCTACTGCCGGAAAGAGTG
GCGCCAGGGGAGCCTCGGTCAAAAAGTGCAGGATGAGGGTCGTTTTGTCG
GATCAAACGCCAGAGGAGCGGGAGAAAAACCGTGTATATGTTCATAGTAG
CTATGTGCGAGAACGGGTGCAGACCCCTGATGGACGACACCCTGAAACGT
CACCCCCGCTTCGTCGAGTGGGGGAAAGAACGCCTCGCGAACGCGAAAAA
AGTGTCGGCCGCCTTCCCGTATAGGAACGATGTCATTGAAATGCTTGGCG
ACGTCCCTTGTTATACCAGAAGAGATATAGAGGGGGCAAACGAGGGCGTC
GAACCTCGTGGAGAAGCTCCAGCTGGAGTCCTATGAGTTCACCTGAAAAT
ATATCTCCATTTTCAGCGGGGCTCTGGCACTTGCTTGCCTGTTCAACGCA
GCCTGCCTTCGTCCCCAAGATTTTTTCTGGATGGAGGCCAAGAGGTTGTT
CTACGATCAAAGACTGAGAGGATCCACATTCGGCTACCATCGGAATCAAA
GCGGACAACGGCCGCCGAGAAAAAGGCCGCGAGGGCTTGCATGGAACATG
AACTAGAGGGCGCAGAGGTCGTGCAGTGGTGGGTGGTAATGACACTGGTT
GGGCGACCGTTTCTCAAGACGCACAACGACGGGCATTTTGGCAGATTATT
GGTCCACTGGGAGTGGATGGAGAGGTGCTGAGCGAGAACTTATTTGGCCA
CGTGGTAGACTCGATCGGAGGGGCATTCTTCGCCACGGGGAATGCGGATG
TCAACGCACTTCGGACGGCGCAAGATCACCATCGCGGCGGGTGGTAGCGT
GGCAGGGGGAGGCATAGCGCCCGTGCAGGTTTAGATTTGGAGGCGCCTCC
TCGAGTGGGCGTAAATGTTGGCGCTAGTCTACATACATGAGTGCATAGGA
TGGTCGACATATCTACATACTCTAAAGGAAGTCAGCACCTCCCACGACAT
GTTGTAAATTTATTGTTGAGGCACGGGGATTAATACTTCATAGTCTATCT
AGCTGACTGACCTTCTGCGAAACAAATTCTTCCCGATGGGAGTCGGTTCA
CGGCAATCACGTGGCGAGTAGTTGTCGGCCTGGGGAACATCTCCAGGACA
ACGTCATCATATTCGTTTTCGCACTGTACGACAGTATGACACTCTCTACA
CCCTAATCCCCGATCTTCGCTCAAACCCACATGTCAAATGTATACGAGGA
CGGATCGAAGAGAACAGTCTGTTCAACGGCTGGCCCAACGCAGGGGAAAT
CGTGGGTCCTACATCCAACGAGATCCTACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7174:3529..6958+

>mRNA_Ecto-sp13_S_contig7174.18288.1 ID=mRNA_Ecto-sp13_S_contig7174.18288.1|Name=mRNA_Ecto-sp13_S_contig7174.18288.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7174:3529..6958+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCGCCGAAGACTCTTGGCTGGTAGCCGTTCGTGACGTGCCCCGGTA
CACGGTGGAGCGAGCACAGGGGGCGGGCAGAGAACAGTCTGTTCAACGGC
TGGCCCAACGCAGGGGAAATCGTGGGTCCTACATCCAACGAGATCCTACC
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