mRNA_Ecto-sp13_S_contig7129.18232.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7129.18232.1 vs. uniprot
Match: D7G2Y7_ECTSI (Similar to TNF receptor associated factor 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Y7_ECTSI) HSP 1 Score: 868 bits (2244), Expect = 2.320e-311 Identity = 477/527 (90.51%), Postives = 490/527 (92.98%), Query Frame = 1
Query: 1 SHPGSPGGMSVLSATSTALSVGGSTKTGSTENGEGLRRARWVKRQLLTRAPKTAEEIALDDKEELAVAKMRRQKELDKKAEEQYKAERLRKRGPAGVMLMRRERGRTALQVAERSAKRAKAEKVLREEEARLALVEAQKVSQELQAAKSRLAKRNKKKQKRGIANDTAAGSKSKLLAPAQKALKQQREGEKQQSTGRLQGDTSKRINTASADAGAGPSIVPAITNAGEPSSSMVTTQHKTPTTATDASFAQVRLGQEKFFHETEQCCKRILPCELGCGLRMREEEWLSPSLVNPAVPCQQHHXXXXXXXXXXXXXXXXGEWLPFEDLMKHMKVSCVKRPFPPVKCRLGCGEEFHGGLHRMLQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQSGDGGGGAFAEALLYATPDDELEVTVGGGGAAGEYGSEIEVPGGFDDFGKAVFDMVDQHGVAEGGWPGGGTGHGGNPHWA 1581
S GS GG SVLSATSTALSV GST+TGSTENGEGLR ARWVKRQLLTRAPKTAEEIALDDKEEL VAKMRR+KELDKKAEEQYKAERLRKRGPAGVML+RRERGRTALQVAERSAKRAKAEK LREEEARLALVEAQKVSQELQAAKSRLAK+NKKKQKRGIAN TAA ++SKLL P QKALKQQ+EG K +ST R +GDTSK +NTASADAGAGPSIVPAITNAGE S M P +VRLGQEKFFHETEQCCKRILPCELGCGLRMREEEWLSPSLVNPAV CQQHHXXXXXXXXXXXXXXXXGEWLPFEDLMKHMKVSCVKRPFPPVKCRLGCGE+FHGGLHRMLQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQSGDGGGGAFAEALLYATPDDELEVTVGGGGAAGEYGSEIEVPGGFDDFGKAVFDMVDQHGVAEGGWPGGG+GHGGNPHWA
Sbjct: 28 SQVGSSGGTSVLSATSTALSVEGSTRTGSTENGEGLRTARWVKRQLLTRAPKTAEEIALDDKEELVVAKMRRKKELDKKAEEQYKAERLRKRGPAGVMLVRRERGRTALQVAERSAKRAKAEKALREEEARLALVEAQKVSQELQAAKSRLAKKNKKKQKRGIANGTAASAESKLLHPTQKALKQQQEGGKHRSTDREKGDTSKHMNTASADAGAGPSIVPAITNAGEGGSEMHRDDMVVPVGLEGKGDDEVRLGQEKFFHETEQCCKRILPCELGCGLRMREEEWLSPSLVNPAVTCQQHHXXXXXXXXXXXXXXXXGEWLPFEDLMKHMKVSCVKRPFPPVKCRLGCGEKFHGGLHRMLQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQSGDGGGGAFAEALLYATPDDELEVTVGGGGAAGEYGSEIEVPGGFDDFGKAVFDMVDQHGVAEGGWPGGGSGHGGNPHWA 554
BLAST of mRNA_Ecto-sp13_S_contig7129.18232.1 vs. uniprot
Match: A0A6H5L1R4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1R4_9PHAE) HSP 1 Score: 299 bits (766), Expect = 1.960e-94 Identity = 147/155 (94.84%), Postives = 149/155 (96.13%), Query Frame = 1
Query: 1168 MVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQSGDGGGGAFAEALLYATPDDELEVTVGGGGAAGEYGSEIEVPGGFDDFGKAVFDMVDQHGVAEGGWPGGGTGHGGNPHWAAGGGGGCSMVAKKASVV 1632
MVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQ WGAGGGAGHFKGGQSGDGGGGAFAEALLY TPDDELEVTVGGGGAAGEYGSE EVPGGFDDFGKAVFDM+DQHGVAEGGWPGGG GHGGNPHWAAG GGGCSMVAKKA V+
Sbjct: 1 MVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQVWGAGGGAGHFKGGQSGDGGGGAFAEALLYVTPDDELEVTVGGGGAAGEYGSEKEVPGGFDDFGKAVFDMIDQHGVAEGGWPGGGAGHGGNPHWAAGXGGGCSMVAKKACVI 155
BLAST of mRNA_Ecto-sp13_S_contig7129.18232.1 vs. uniprot
Match: A0A7S1U9Z3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9Z3_9STRA) HSP 1 Score: 218 bits (556), Expect = 4.490e-62 Identity = 128/227 (56.39%), Postives = 152/227 (66.96%), Query Frame = 1
Query: 754 VRLGQEKFFHETEQCCKRILPCELGCGLRMREEEWLSPS---LVNP----AVPCQQHHXXXXXXXXXXXXXXXXGEWLPFEDLMKHMKVSCVKRPFPPVKCRLGCGEEFHGGLHRMLQSEEERIDHEHELCPHRLLHCVW-AGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQSGDGGGGAFAEALLYATPDDELE 1410
+R+G E+ HE EQC KRILPC LGCG REE+W+ P +V+ V Q XXXXXXXXXXXXXXXX EW+PF DL +HM C+KRPFPP+ CRLGCGE+F GG HRMLQSEEER+DHE LC +RL+ C W GC M+MAK+RR H + H+ RTGVF++TV G TF VP R LK+Q WG GGG+GH A+ E LL TP ELE
Sbjct: 170 MRMGTEQHHHEREQCKKRILPCTLGCGECYREEQWIGPVEDVVVDYRGALGVSLQDXXXXXXXXXXXXXXXXXXXEWVPFSDLQEHMDNLCIKRPFPPLLCRLGCGEQFAGGAHRMLQSEEERLDHEQNLCANRLVRCDWPGGCVAMIMAKNRRKHRQLHIQRTGVFVFTVAGTSTFVVPESTRQLKLQCWGGGGGSGHLYDRIGXXXXXXAYVEGLLLVTPGGELE 396
BLAST of mRNA_Ecto-sp13_S_contig7129.18232.1 vs. uniprot
Match: A0A6G0W578_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W578_9STRA) HSP 1 Score: 197 bits (501), Expect = 2.220e-50 Identity = 109/274 (39.78%), Postives = 149/274 (54.38%), Query Frame = 1
Query: 760 LGQEKFFHETEQCCKRILPCELGCGLRMREEEWLSPSLVNPAVPCQQHHXXXXXXXXXXXXXXXXGEWLPFEDLMKHMKVSCVKRPFPPVKCRLGCGEEFHGGLHRMLQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQSGDGGGGAFAEALLYATPDDELEVTVGGGGAAGEYGSEIEVPGGFDDFGKAVFDMVDQHGVAEGGWPGGGTGHGGNPHWA 1581
+G +K HE ++C +RI+ C LGC + EW P + H G W+ + L HM C+KRP P + CR+GCG+ FHG + +L E+ER HE E CP+R++ C+W GC+E +MAKDR+ H + H+ +G+ + G + + VP C+ +KVQAWGAGGG+G G + G GGGGAFAEA+ P + L + VG GG G YG EI D +V Q G A GG PGGG+GH N WA
Sbjct: 888 IGLQKNDHEHDECRRRIMICRLGCPIFHEALEWQQPHAEKIEL---DWHEVYECKSRLVQCPRECGAWIQNDQLPHHMDYMCIKRPVPDLYCRVGCGKIFHGATNLILALEQERTWHELEECPNRIVSCMWPGCQEEMMAKDRKLHRKNHLCASGIVTFKTNGSFEYVVPKDCKYIKVQAWGAGGGSGVLHGYKFGHGGGGAFAEAICPVHPGETLYIVVGEGGQGGIYG-EINPSETSDGL-----PLVSQVGQAFGGLPGGGSGHSSNNGWA 1152
BLAST of mRNA_Ecto-sp13_S_contig7129.18232.1 vs. uniprot
Match: A0A1V9YY24_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YY24_9STRA) HSP 1 Score: 175 bits (444), Expect = 5.920e-43 Identity = 105/304 (34.54%), Postives = 153/304 (50.33%), Query Frame = 1
Query: 754 VRLGQEKFFHETEQCCKR---------------ILPCELGCGLRMREEEWLSPSLVNPAVPCQQHHXXXXXXXXXXXXXXXXGEWLPFEDLMKHMKVSCVKRPFPPVKCRLGCGEEFHGGLHRMLQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQSGDGGGGAFAEALLYATPDDELEVTVGGGGAAGEYGSEIEVPGGFDDFGKAVFDMVDQHGVAEGGWPGGGTGHGGNPHWAAGGGGGCSMVAKK 1620
VRLG + HE ++C +R I+ C LGC + EW + + H G W+ + + H CV+RP + CRLGCG+ F G +++L+ E +R HE E CP R++ C+W GC+E ++AK+R+ H H+ +G+ + G Y F VP + +KVQAWGAGGG+G G + G GGGGAF E + P + L + VGGGG AG +G ++ ++ + G A GG PGGG G+ GN WA GGGGG + + +K
Sbjct: 1117 VRLGVDLDNHEHDECRRRCVVFRDEFVRDKRCSIMLCRLGCTVFHETIEWQKSRGNLGEISWHEMHECATRLIKCPRDC---GMWVALDQVDVHSNERCVRRPVSGLMCRLGCGQLFEGENNQILELEHDRSWHEAEDCPLRIVKCMWPGCQETMLAKERKLHRRTHLCASGITTFKTAGNYDFVVPKEVKHIKVQAWGAGGGSGVLHGFKFGHGGGGAFVEGICPVHPGETLLLVVGGGGQAGVFGETAPSDT------ESGLPLLTRIGEALGGIPGGGAGYSGNNEWACGGGGGYTSMTRK 1411
BLAST of mRNA_Ecto-sp13_S_contig7129.18232.1 vs. uniprot
Match: A0A2D4BDW1_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDW1_PYTIN) HSP 1 Score: 171 bits (433), Expect = 1.600e-41 Identity = 107/324 (33.02%), Postives = 154/324 (47.53%), Query Frame = 1
Query: 781 HETEQCCKRILPCELGCGLRMREEEWLSPSLVNPAVPCQQHHXXXXXXXXXXXXXXXXGEWLPFEDLMKHMKVSCVKRPFPPVKCRLGCGEEFHGGLHRMLQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQSGDGGGGAFAEALLYATPDDELEVTVGGGGAAGEYGSEIEVPGGFDDFGKAV------------------------------------FDMVDQHGV------AEGGWPGGGTGHGGNPHWAAGGGGGCSMVAKKAS 1626
HE +C +R + C LGCGL + +++W + ++ G +LP L +HM CV+RP ++CRLGCG + GG H +L E++R HE + C R + C W C +++A+DR +H H++ +G+ + + ++VP + LK+QAWGAGGGAGH +G G GGGGAF EA+ P + L + VG GG+AG Y +VP DD G A+ + V Q V A GG PGGG GH GN A GGGGG + V + +
Sbjct: 1211 HERVECRRRRMLCRLGCGLVLEDQQWQRQIYEH-----ERSDAASRCDSRIVACPRDCGVFLPHLSLARHMDELCVRRPVGDLRCRLGCGAVYQGGAHELLALEQQREAHEQDDCALRKVECTWPRCRGVILARDRDAHRRTHLLSSGIATFLTAEIHEYRVPRDVQRLKLQAWGAGGGAGHLRGQCVGHGGGGAFVEAVFRVHPGETLYLAVGSGGSAGRYAQMTQVP---DDEGIALAAERAKTAVTTAATPTPLMTASTANAARRREARDQFYRSVTQALVDTTVSSAPGGCPGGGVGHSGNRESACGGGGGFTSVYRNGA 1526
BLAST of mRNA_Ecto-sp13_S_contig7129.18232.1 vs. uniprot
Match: A0A2D4BET2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BET2_PYTIN) HSP 1 Score: 169 bits (427), Expect = 1.070e-40 Identity = 100/294 (34.01%), Postives = 144/294 (48.98%), Query Frame = 1
Query: 781 HETEQCCKRILPCELGCGLRMREEEW----LSPSLVNPAVPCQQHHXXXXXXXXXXXXXXXXGEWLPFEDLMKHMKVSCVKRPFPPVKCRLGCGEEFHGGLHRMLQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQSGDGGGGAFAEALLYATPDDELEVTVGGGGAAGEYGSEIEVPGGFDDFG--------KAVFDMVDQHGVAEGGWPGGGTGHGGNPHWAAGGGGGCSMVAKKAS 1626
HE +C +R + C LGCGL + +++W + A C ++ CV+RP ++CRLGCG + GG H +L E++R HE + C R + C W C +++A+DR +H H++ +G+ + + ++VP + LK+QAWGAGGGAGH +G G GGGGAF EA+ P + L + VG GG+AG Y +VP DD G K + A GG PGGG GH GN A GGGGG + V + +
Sbjct: 2329 HERVECRRRRMLCRLGCGLVLEDQQWQRQIYEHERSDAASRCDS-------------------------------RILCVRRPVGDLRCRLGCGAVYQGGAHELLALEQQREAHEQDDCALRKVECTWPRCRGVILARDRDAHRRTHLLSSGIATFLTAEIHEYRVPRDVQRLKLQAWGAGGGAGHLRGQCVGHGGGGAFVEAVFRVHPGETLYLAVGSGGSAGRYAQMTQVP---DDEGIALAAERAKTAAHVDTTVSSAPGGCPGGGVGHSGNRESACGGGGGFTSVYRNGA 2588
BLAST of mRNA_Ecto-sp13_S_contig7129.18232.1 vs. uniprot
Match: A0A6H5L922_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L922_9PHAE) HSP 1 Score: 166 bits (419), Expect = 5.820e-40 Identity = 108/136 (79.41%), Postives = 111/136 (81.62%), Query Frame = 1
Query: 292 MLMRRERGRTALQVAERSAKRAKAEKVLREEEARLALVEAQKVSQELQAAKSRLAKRNKKKQKRGIANDTAAGSKSKLLAPAQKALKQQREGEKQQSTGRLQGDTSKRINTASADAGAGPSIVPAITNAGEPSSSM 699
MLMRRERG TALQVAERSAKRAKAEK LREEEARLALVEAQKVSQELQAAKSRLAK+NKKKQKRGI NDTAA ++SKLLAPAQK LKQQ DT KRINTASAD AGPSIVPAITNAGE S M
Sbjct: 1 MLMRRERGCTALQVAERSAKRAKAEKALREEEARLALVEAQKVSQELQAAKSRLAKKNKKKQKRGIGNDTAASAESKLLAPAQKGLKQQXXXXXXXXXXXXXXDTPKRINTASADIRAGPSIVPAITNAGEGGSEM 136
BLAST of mRNA_Ecto-sp13_S_contig7129.18232.1 vs. uniprot
Match: A0A7S2B3R6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B3R6_9STRA) HSP 1 Score: 153 bits (386), Expect = 2.060e-39 Identity = 75/195 (38.46%), Postives = 99/195 (50.77%), Query Frame = 1
Query: 748 AQVRLGQEKFFHETEQCCKRILPCELGCGLRMREEEWLSP--------------------------------SLVNPAVP-------CQQHHXXXXXXXXXXXXXXXXGEWLPFEDLMKHMKVSCVKRPFPPVKCRLGCGEEFHGGLHRMLQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVV 1215
A R GQ + H+ E C KRI+ C LGC L++R+E+WL P S+V+ + P QQ H GEW+P+ED+ H+ C KRPFPP CRLGCG EF GG H +LQ EEER++HE E+C RL C W GC M +AKDRR+H ++H++
Sbjct: 38 AWTREGQAEHIHQKENCPKRIVGCVLGCPLKLRDEQWLLPATGGIPKSIMEVESGEGKEDAIIIVNDDGSVSSVVSRSGPDPKEGFNIQQWHEARECPRRLTPCDRKCGEWVPYEDMQLHLNKDCPKRPFPPFLCRLGCGLEFTGGFHMLLQMEEERLEHEEEMCERRLCRCTWKGCNAMTLAKDRRAHRKKHII 232
BLAST of mRNA_Ecto-sp13_S_contig7129.18232.1 vs. uniprot
Match: A0A7S2RVK2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RVK2_9STRA) HSP 1 Score: 142 bits (358), Expect = 7.470e-37 Identity = 64/121 (52.89%), Postives = 82/121 (67.77%), Query Frame = 1
Query: 1054 EFHGGLHRMLQSEEERIDHEHELCPHRLLHCVWAGCEEMVMAKDRRSHSEEHVVRTGVFLYTVPGKYTFKVPHGCRSLKVQAWGAGGGAGHFKGGQSGDGGGGAFAEALLYATPDDELEVT 1416
EF GG+HRMLQ EEER++HE E+C R++ C W GC A R H ++H++ +G+ YTVPG Y +KVP G + LK+Q WG GGG+GH K SG GGGGAF +ALL DD LE+T
Sbjct: 1 EFSGGVHRMLQCEEERLEHEQEMCEFRIVRCTWQGCASCFPAYKRSEHRQQHIIASGIITYTVPGLYQYKVPSGTKQLKIQLWGGGGGSGHLKQQVSGQGGGGAFVDALLNVQTDDVLEIT 121 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7129.18232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7129.18232.1 >prot_Ecto-sp13_S_contig7129.18232.1 ID=prot_Ecto-sp13_S_contig7129.18232.1|Name=mRNA_Ecto-sp13_S_contig7129.18232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=543bp MSVLSATSTALSVGGSTKTGSTENGEGLRRARWVKRQLLTRAPKTAEEIAback to top mRNA from alignment at Ecto-sp13_S_contig7129:33..7587- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7129.18232.1 ID=mRNA_Ecto-sp13_S_contig7129.18232.1|Name=mRNA_Ecto-sp13_S_contig7129.18232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7129:33..7587- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7129:33..7587- >mRNA_Ecto-sp13_S_contig7129.18232.1 ID=mRNA_Ecto-sp13_S_contig7129.18232.1|Name=mRNA_Ecto-sp13_S_contig7129.18232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1629bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7129:33..7587- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |