mRNA_Ecto-sp13_S_contig7078.18158.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig7078.18158.1 vs. uniprot
Match: D7FQB5_ECTSI (SAM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQB5_ECTSI) HSP 1 Score: 503 bits (1294), Expect = 3.810e-179 Identity = 269/275 (97.82%), Postives = 270/275 (98.18%), Query Frame = 1
Query: 1 MSNLGAPPSSWSASRLSAWLGEDEKLNPEAIDALALCDVDGRMFLEMDEEDLAESDELGLDMKSIHAFLKLQADLEALELSHHGERPPLPGSSVLPFNTANPQPQPXXXXXXXXXXXXXETAGSSGEPPCTPGGESSVGRSGSGGGGRSWSLPCVSVDAEGNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVLPDDFKLGE 825
MSNLGAPPSSWSASRLSAWLGEDEKLNPEAIDALALCDVDGRMFLEMDEEDLAESDELGLDMKSIHAFLKLQADLEALELSHHGERPPLPGSSVLPFNTANPQP+PXXXXXXXXXXXX ETAGSSGEPPCT GGESSVG GSGGG RSWSLPCVSVDAEGNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVLPDDFKLGE
Sbjct: 1 MSNLGAPPSSWSASRLSAWLGEDEKLNPEAIDALALCDVDGRMFLEMDEEDLAESDELGLDMKSIHAFLKLQADLEALELSHHGERPPLPGSSVLPFNTANPQPRPXXXXXXXXXXXX-ETAGSSGEPPCTLGGESSVGGCGSGGGSRSWSLPCVSVDAEGNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVLPDDFKLGE 274
BLAST of mRNA_Ecto-sp13_S_contig7078.18158.1 vs. uniprot
Match: A0A7S4C942_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C942_9EUGL) HSP 1 Score: 131 bits (329), Expect = 6.510e-35 Identity = 59/112 (52.68%), Postives = 78/112 (69.64%), Query Frame = 1
Query: 436 GGRSWSLPCVSVDAEGNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDG 771
GG W +P V+VD G S++ + LGA + IGALSE++ T ++ RETPGDY FD+HCAP +Q +V+LD VD+EV+DGTR+V AG + EDTWG GH SRAV+G
Sbjct: 10 GGSEWVIPVVAVDEAGKSYWSSMTIPLGASGGANSIGALSEVMKVTTMQIRETPGDYKFDWHCAPRKQFIVNLDGAVDVEVSDGTRKVVSAGEMFFVEDTWGTGHLSRAVNG 121
BLAST of mRNA_Ecto-sp13_S_contig7078.18158.1 vs. uniprot
Match: A0A7S1NNL2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NNL2_9EUGL) HSP 1 Score: 120 bits (302), Expect = 4.920e-31 Identity = 54/109 (49.54%), Postives = 79/109 (72.48%), Query Frame = 1
Query: 481 GNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVLPD 807
G+S+F + + LG + IG+LS +P TGL R+TP DYDFD+H AP +Q VV+LD V+IEV+DG+++V AG + L EDT G+GHRS++V+G+ R+SLF+ + D
Sbjct: 1 GHSYFTTKSIPLGPSHGPNSIGSLSAAMPVTGLVVRDTPADYDFDWHVAPRKQFVVNLDAAVEIEVSDGSKKVLGAGEMFLLEDTEGQGHRSKSVNGQPRRSLFITVAD 109
BLAST of mRNA_Ecto-sp13_S_contig7078.18158.1 vs. uniprot
Match: A0A7C8CI49_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C8CI49_9DELT) HSP 1 Score: 116 bits (291), Expect = 2.630e-29 Identity = 54/87 (62.07%), Postives = 68/87 (78.16%), Query Frame = 1
Query: 541 IGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVL 801
IG++S L TG+ FRET GDYDF FH AP RQ V++L+ GV+IEV DGTRR+ AG V+LAEDT G+GH SRAVDG+ R+S+F+ L
Sbjct: 29 IGSISSLEGATGIAFRETEGDYDFGFHNAPRRQYVINLNAGVEIEVGDGTRRLLGAGEVLLAEDTTGRGHISRAVDGRPRRSIFVTL 115
BLAST of mRNA_Ecto-sp13_S_contig7078.18158.1 vs. uniprot
Match: A0A7C7YFX1_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7YFX1_9DELT) HSP 1 Score: 116 bits (291), Expect = 2.630e-29 Identity = 53/87 (60.92%), Postives = 66/87 (75.86%), Query Frame = 1
Query: 541 IGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVL 801
IG +S L P TG+ FRET GDYDF FH AP RQ V++LD V++E DGT+RV G V+LAEDT G+GHRSRAVDG+ R+S+F+ L
Sbjct: 29 IGRISTLEPATGIVFRETEGDYDFGFHNAPRRQYVINLDAAVELETGDGTKRVVGPGEVLLAEDTTGRGHRSRAVDGRPRRSIFVTL 115
BLAST of mRNA_Ecto-sp13_S_contig7078.18158.1 vs. uniprot
Match: A0A2E1A164_9DELT (Uncharacterized protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A2E1A164_9DELT) HSP 1 Score: 116 bits (290), Expect = 3.710e-29 Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = 1
Query: 541 IGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVL 801
IG LS+LIP TG+ FRET GDY +++H AP RQ +V L+ VDIEV DGTRRVF G ++LAEDT G+GH SRAV G+ RKSLFL L
Sbjct: 29 IGKLSKLIPATGVIFRETSGDYHYEWHNAPRRQYIVMLEGEVDIEVGDGTRRVFQTGDLLLAEDTTGQGHLSRAVKGQPRKSLFLTL 115
BLAST of mRNA_Ecto-sp13_S_contig7078.18158.1 vs. uniprot
Match: UPI00096B5534 (uncharacterized protein LOC109581817 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=UPI00096B5534) HSP 1 Score: 116 bits (290), Expect = 7.260e-29 Identity = 55/115 (47.83%), Postives = 77/115 (66.96%), Query Frame = 1
Query: 478 EGNSFFCDRKVALGAGTTGSG-IGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVLPDDFKL 819
+G S F K+ + G G IG++S++IP+TGL FRETP Y++ +H AP RQ +V+LD V + V+ G +R+ G V EDT GKGH S +VDGK R+S+FL +PDD+KL
Sbjct: 25 DGESHFGTVKIKM----KGKGDIGSISDIIPSTGLMFRETPSSYNYSWHTAPRRQFIVNLDASVQVTVSSGEKRILKEGEVFFVEDTTGKGHFSESVDGKVRRSVFLPVPDDYKL 135
BLAST of mRNA_Ecto-sp13_S_contig7078.18158.1 vs. uniprot
Match: A0A800LVS0_9BACT (Uncharacterized protein n=2 Tax=FCB group TaxID=1783270 RepID=A0A800LVS0_9BACT) HSP 1 Score: 115 bits (288), Expect = 7.360e-29 Identity = 57/110 (51.82%), Postives = 74/110 (67.27%), Query Frame = 1
Query: 472 DAEGNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVL 801
D G S F D + L + IG LS ++ TG+ FR+T GDYDFD+H AP+R+ +V LD V+I DG R+F G ++LAEDT G+GHRSRAVDGK RKSLF++L
Sbjct: 9 DGNGQSHFEDVDIPL---SDTEDIGRLSSVLQATGVIFRKTEGDYDFDWHPAPSRRFIVMLDGSVEITAGDGETRIFNTGDIVLAEDTQGRGHRSRAVDGKPRKSLFILL 115
BLAST of mRNA_Ecto-sp13_S_contig7078.18158.1 vs. uniprot
Match: A0A835Z6U7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6U7_9STRA) HSP 1 Score: 118 bits (295), Expect = 1.830e-28 Identity = 51/73 (69.86%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 592 TPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVLPDD 810
TPGDYDFDFH AP RQ +VSLD GVDIE + G RR FPAGTVM EDTWG+GHRSRAV G +R +F+ +PDD
Sbjct: 162 TPGDYDFDFHVAPRRQFIVSLDAGVDIETSSGERRAFPAGTVMFVEDTWGRGHRSRAVGGAARHCVFIGVPDD 234
BLAST of mRNA_Ecto-sp13_S_contig7078.18158.1 vs. uniprot
Match: A0A7Y4TWR8_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7Y4TWR8_9DELT) HSP 1 Score: 113 bits (283), Expect = 4.080e-28 Identity = 59/113 (52.21%), Postives = 76/113 (67.26%), Query Frame = 1
Query: 463 VSVDAEGNSFFCDRKVALGAGTTGSGIGALSELIPTTGLKFRETPGDYDFDFHCAPARQLVVSLDEGVDIEVTDGTRRVFPAGTVMLAEDTWGKGHRSRAVDGKSRKSLFLVL 801
V A+ S F D ++ L +G G +S+L TG+ FRET GDY+FDFH AP RQ VV+L+ V+IEV DGT+R+ G ++LAEDT G+GH SRAV GK RKSLF+ L
Sbjct: 6 VYTGADNKSHFEDVEIPL---KSGGKAGFMSDLQKATGVIFRETGGDYNFDFHNAPRRQYVVNLEGEVEIEVGDGTKRILRTGDILLAEDTTGQGHISRAVGGKPRKSLFITL 115 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7078.18158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig7078.18158.1 >prot_Ecto-sp13_S_contig7078.18158.1 ID=prot_Ecto-sp13_S_contig7078.18158.1|Name=mRNA_Ecto-sp13_S_contig7078.18158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=276bp MSNLGAPPSSWSASRLSAWLGEDEKLNPEAIDALALCDVDGRMFLEMDEEback to top mRNA from alignment at Ecto-sp13_S_contig7078:253..3189- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig7078.18158.1 ID=mRNA_Ecto-sp13_S_contig7078.18158.1|Name=mRNA_Ecto-sp13_S_contig7078.18158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2937bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7078:253..3189- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7078:253..3189- >mRNA_Ecto-sp13_S_contig7078.18158.1 ID=mRNA_Ecto-sp13_S_contig7078.18158.1|Name=mRNA_Ecto-sp13_S_contig7078.18158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7078:253..3189- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |