mRNA_Ecto-sp13_S_contig7020.18069.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7020.18069.1
Unique NamemRNA_Ecto-sp13_S_contig7020.18069.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7020.18069.1 vs. uniprot
Match: D8LIT6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIT6_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 3.850e-8
Identity = 30/36 (83.33%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:  151 TYISSRRGLPSIARWRIHQGRTTLSSTTARSSMRTV 258
            T I+  RGLPS+ARWRIHQGRTTLSSTTARSSMRT+
Sbjct:   21 TIITQSRGLPSMARWRIHQGRTTLSSTTARSSMRTL 56
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7020.18069.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIT6_ECTSI3.850e-883.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7020contigEcto-sp13_S_contig7020:602..1046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size445
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_001450.1
Cds size408
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.4888494-UTR-Ecto-sp13_S_contig7020:601..6191681463963.4888494-UTR-Ecto-sp13_S_contig7020:601..619Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7020 602..619 +
1681463963.5139356-UTR-Ecto-sp13_S_contig7020:1027..10461681463963.5139356-UTR-Ecto-sp13_S_contig7020:1027..1046Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig7020 1028..1046 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463963.4996274-CDS-Ecto-sp13_S_contig7020:619..10271681463963.4996274-CDS-Ecto-sp13_S_contig7020:619..1027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7020 620..1027 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7020.18069.1prot_Ecto-sp13_S_contig7020.18069.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7020 620..1027 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7020.18069.1

>prot_Ecto-sp13_S_contig7020.18069.1 ID=prot_Ecto-sp13_S_contig7020.18069.1|Name=mRNA_Ecto-sp13_S_contig7020.18069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=136bp
MQFQTAAHFVRTKPYSNLYVGVCLCVAEQFDKVINLHVACTQRYTYISSR
RGLPSIARWRIHQGRTTLSSTTARSSMRTVRKSVNSAEDEVFAACSVARG
SCVHHRTMSDEKQVHRVHIRWSLGSLPPQEPGFRP*
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mRNA from alignment at Ecto-sp13_S_contig7020:602..1046+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7020.18069.1 ID=mRNA_Ecto-sp13_S_contig7020.18069.1|Name=mRNA_Ecto-sp13_S_contig7020.18069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=445bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7020:602..1046+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGCCAATAAATAAGACATGCAATTTCAGACCGCCGCACATTTCGTCAG
AACAAAACCTTACTCCAACCTCTACGTCGGTGTGTGCCTCTGTGTTGCTG
AGCAATTTGACAAAGTGATCAACCTCCACGTTGCCTGCACCCAGCGTTAT
ACGTACATTTCTTCCCGCAGGGGTTTACCATCGATAGCAAGGTGGCGGAT
ACATCAGGGACGCACTACTTTGAGTTCTACCACAGCACGCTCATCTATGC
GTACGGTGAGGAAGTCTGTCAATAGCGCCGAGGATGAGGTGTTTGCCGCG
TGTTCTGTTGCAAGGGGCAGTTGTGTCCACCACCGGACGATGAGTGATGA
AAAACAGGTGCATCGTGTACACATCCGATGGTCTCTTGGAAGCCTACCAC
CTCAAGAACCTGGGTTTCGACCGTAACTCGTTTTTAGAGCCGAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7020:602..1046+

>mRNA_Ecto-sp13_S_contig7020.18069.1 ID=mRNA_Ecto-sp13_S_contig7020.18069.1|Name=mRNA_Ecto-sp13_S_contig7020.18069.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=408bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7020:602..1046+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAATTTCAGACCGCCGCACATTTCGTCAGAACAAAACCTTACTCCAA
CCTCTACGTCGGTGTGTGCCTCTGTGTTGCTGAGCAATTTGACAAAGTGA
TCAACCTCCACGTTGCCTGCACCCAGCGTTATACGTACATTTCTTCCCGC
AGGGGTTTACCATCGATAGCAAGGTGGCGGATACATCAGGGACGCACTAC
TTTGAGTTCTACCACAGCACGCTCATCTATGCGTACGGTGAGGAAGTCTG
TCAATAGCGCCGAGGATGAGGTGTTTGCCGCGTGTTCTGTTGCAAGGGGC
AGTTGTGTCCACCACCGGACGATGAGTGATGAAAAACAGGTGCATCGTGT
ACACATCCGATGGTCTCTTGGAAGCCTACCACCTCAAGAACCTGGGTTTC
GACCGTAA
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