mRNA_Ecto-sp13_S_contig7010.18061.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig7010.18061.1
Unique NamemRNA_Ecto-sp13_S_contig7010.18061.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig7010.18061.1 vs. uniprot
Match: A0A6H5KK37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK37_9PHAE)

HSP 1 Score: 119 bits (298), Expect = 2.250e-30
Identity = 98/110 (89.09%), Postives = 99/110 (90.00%), Query Frame = 1 
Query:    1 MEKSGKEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPMXXXTLDESMGEQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYVSSRGRVRIAKRRFSELG 330
            MEKS KEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPM   TLDESMGEQ+      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RYVSSRGRVRIAKRRFSELG
Sbjct:  216 MEKSAKEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPMPCPTLDESMGEQKDGEEEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERYVSSRGRVRIAKRRFSELG 325
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BLAST of mRNA_Ecto-sp13_S_contig7010.18061.1 vs. uniprot
Match: A0A6H5KQE8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQE8_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.370e-23
Identity = 99/110 (90.00%), Postives = 99/110 (90.00%), Query Frame = 1 
Query:    1 MEKSGKEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPMXXXTLDESMGEQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYVSSRGRVRIAKRRFSELG 330
            MEKSGKEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPMXXX          XXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXRYVSSRGRVRIAKRRFSELG
Sbjct:  172 MEKSGKEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXRYVSSRGRVRIAKRRFSELG 281
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BLAST of mRNA_Ecto-sp13_S_contig7010.18061.1 vs. uniprot
Match: A0A6H5KHC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHC6_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.130e-19
Identity = 45/53 (84.91%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 MEKSGKEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPMXXXTLDESMGEQE 159
            MEKSGKE VGRRT GTQLTG IVPVISSDESPVAPTPNPM   TLDESMGE++
Sbjct:  382 MEKSGKENVGRRTLGTQLTGAIVPVISSDESPVAPTPNPMPSRTLDESMGEKK 434
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BLAST of mRNA_Ecto-sp13_S_contig7010.18061.1 vs. uniprot
Match: A0A6H5KBX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBX9_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 7.660e-19
Identity = 45/53 (84.91%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 MEKSGKEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPMXXXTLDESMGEQE 159
            MEKSGKEKVGRRT GTQ TGGIVPVISSDESPVAPT NPM   TLDESM E+E
Sbjct:  210 MEKSGKEKVGRRTLGTQSTGGIVPVISSDESPVAPTTNPMPSPTLDESMEEKE 262
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BLAST of mRNA_Ecto-sp13_S_contig7010.18061.1 vs. uniprot
Match: A0A6H5JNL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNL2_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 3.260e-17
Identity = 93/113 (82.30%), Postives = 94/113 (83.19%), Query Frame = 1 
Query:    1 MEKSGKEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPMXXXTLDESMGEQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXR---YVSSRGRVRIAKRRFSELG 330
            MEKSGKEKVGRRT G QLTGGIVPVI SDESPVAPTPNPMXXX          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    Y SSRG VR+AKRRFSELG
Sbjct:   14 MEKSGKEKVGRRTLGPQLTGGIVPVIPSDESPVAPTPNPMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYESSRGPVRVAKRRFSELG 126
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BLAST of mRNA_Ecto-sp13_S_contig7010.18061.1 vs. uniprot
Match: A0A6H5KJY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY4_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 6.830e-17
Identity = 75/110 (68.18%), Postives = 81/110 (73.64%), Query Frame = 1 
Query:    1 MEKSGKEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPMXXXTLDESMGEQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYVSSRGRVRIAKRRFSELG 330
            MEKSGKE VGRRT GTQLTG I+PVISSDESPVAPT        LD+SMGE               XXXXXXXXXXXXXXXXXXXXXXX +Y+ SRGRVRIAK+RF E+G
Sbjct:   14 MEKSGKEMVGRRTLGTQLTGVILPVISSDESPVAPT--------LDQSMGE--------------GXXXXXXXXXXXXXXXXXXXXXXXAQYIRSRGRVRIAKKRFPEVG 101
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BLAST of mRNA_Ecto-sp13_S_contig7010.18061.1 vs. uniprot
Match: A0A6H5K7E6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7E6_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 1.930e-16
Identity = 64/110 (58.18%), Postives = 69/110 (62.73%), Query Frame = 1 
Query:    1 MEKSGKEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPMXXXTLDESMGEQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYVSSRGRVRIAKRRFSELG 330
            MEKSGKE VGRRT GTQLTG I+PVISSDESPVAPT        LDESMGE+E XXXXXXXXX                           +YVSSRGRV IAK+RF E+G
Sbjct:  882 MEKSGKEMVGRRTLGTQLTGVILPVISSDESPVAPT--------LDESMGEEEEXXXXXXXXXEEA------------------------QYVSSRGRVSIAKKRFPEVG 959
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BLAST of mRNA_Ecto-sp13_S_contig7010.18061.1 vs. uniprot
Match: A0A6H5JKS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS0_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.650e-16
Identity = 75/110 (68.18%), Postives = 79/110 (71.82%), Query Frame = 1 
Query:    1 MEKSGKEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPMXXXTLDESMGEQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYVSSRGRVRIAKRRFSELG 330
            MEKSGKE VGRRT GTQLTG I+PVISSDESPVAPT        LDESMGE              XXXXXXXXXXXXXXXXXXXXX    +YVSSRGRV IAK+RF E+G
Sbjct:  137 MEKSGKEMVGRRTLGTQLTGVILPVISSDESPVAPT--------LDESMGE----VGGGGEKEDEXXXXXXXXXXXXXXXXXXXXXREEAQYVSSRGRVSIAKKRFPEVG 234
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BLAST of mRNA_Ecto-sp13_S_contig7010.18061.1 vs. uniprot
Match: A0A6H5L5G2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5G2_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 8.990e-16
Identity = 63/109 (57.80%), Postives = 68/109 (62.39%), Query Frame = 1 
Query:    4 EKSGKEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPMXXXTLDESMGEQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRYVSSRGRVRIAKRRFSELG 330
            EKSGKE VGRRT GTQLTG I+PVISSDESPVAPT        LDESMGE+E XXXXXXXXX                           +YVSSRGRV IAK+RF E+G
Sbjct:  321 EKSGKEMVGRRTLGTQLTGVILPVISSDESPVAPT--------LDESMGEEEEXXXXXXXXXEEA------------------------QYVSSRGRVSIAKKRFPEVG 397
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BLAST of mRNA_Ecto-sp13_S_contig7010.18061.1 vs. uniprot
Match: A0A6H5KA34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA34_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 1.490e-15
Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 MEKSGKEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPMXXXTLDESMGEQ 156
            MEKSGKEKVGRRT  TQLTGG+V VISSDESPV P PNPM   TL ESMGE+
Sbjct:  277 MEKSGKEKVGRRTLLTQLTGGVVTVISSDESPVVPIPNPMPSPTLYESMGEK 328
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig7010.18061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KK37_9PHAE2.250e-3089.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQE8_9PHAE2.370e-2390.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHC6_9PHAE3.130e-1984.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBX9_9PHAE7.660e-1984.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNL2_9PHAE3.260e-1782.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJY4_9PHAE6.830e-1768.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7E6_9PHAE1.930e-1658.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKS0_9PHAE4.650e-1668.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L5G2_9PHAE8.990e-1657.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KA34_9PHAE1.490e-1578.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig7010contigEcto-sp13_S_contig7010:7069..7401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size333
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_002820.1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681463962.7144904-CDS-Ecto-sp13_S_contig7010:7068..74011681463962.7144904-CDS-Ecto-sp13_S_contig7010:7068..7401Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig7010 7069..7401 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig7010.18061.1prot_Ecto-sp13_S_contig7010.18061.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig7010 7069..7401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig7010.18061.1

>prot_Ecto-sp13_S_contig7010.18061.1 ID=prot_Ecto-sp13_S_contig7010.18061.1|Name=mRNA_Ecto-sp13_S_contig7010.18061.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
MEKSGKEKVGRRTFGTQLTGGIVPVISSDESPVAPTPNPMPSPTLDESMG
EQEDGEEEMEEEREEQEDEEEDGEEGEDGEEEEEEEREEERYVSSRGRVR
IAKRRFSELG*
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mRNA from alignment at Ecto-sp13_S_contig7010:7069..7401-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig7010.18061.1 ID=mRNA_Ecto-sp13_S_contig7010.18061.1|Name=mRNA_Ecto-sp13_S_contig7010.18061.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7010:7069..7401- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAAGTCGGGAAAGGAGAAGGTTGGGAGACGCACGTTTGGGACTCA
ATTGACCGGCGGTATTGTTCCGGTGATATCTTCGGACGAGTCTCCTGTGG
CGCCTACTCCCAACCCCATGCCTAGTCCGACGCTTGACGAGAGCATGGGG
GAGCAGGAAGATGGGGAGGAGGAGATGGAGGAGGAGAGGGAGGAGCAAGA
GGATGAGGAGGAGGACGGGGAGGAGGGGGAGGACGGGGAGGAGGAGGAGG
AAGAGGAGAGGGAGGAAGAGAGATACGTAAGCTCAAGAGGGCGCGTACGC
ATTGCGAAGAGGAGGTTCTCGGAGTTGGGCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig7010:7069..7401-

>mRNA_Ecto-sp13_S_contig7010.18061.1 ID=mRNA_Ecto-sp13_S_contig7010.18061.1|Name=mRNA_Ecto-sp13_S_contig7010.18061.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig7010:7069..7401- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGAAGTCGGGAAAGGAGAAGGTTGGGAGACGCACGTTTGGGACTCA
ATTGACCGGCGGTATTGTTCCGGTGATATCTTCGGACGAGTCTCCTGTGG
CGCCTACTCCCAACCCCATGCCTAGTCCGACGCTTGACGAGAGCATGGGG
GAGCAGGAAGATGGGGAGGAGGAGATGGAGGAGGAGAGGGAGGAGCAAGA
GGATGAGGAGGAGGACGGGGAGGAGGGGGAGGACGGGGAGGAGGAGGAGG
AAGAGGAGAGGGAGGAAGAGAGATACGTAAGCTCAAGAGGGCGCGTACGC
ATTGCGAAGAGGAGGTTCTCGGAGTTGGGCTAG
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